Wall clock time and date at job start Mon Mar 30 2020 00:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99508 * 2 1 4 4 H 1.48500 * 109.46756 * 269.99504 * 3 2 1 5 5 H 1.48496 * 109.47426 * 29.99607 * 3 2 1 6 6 H 1.48507 * 109.47018 * 149.99793 * 3 2 1 7 7 C 1.37878 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99657 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99714 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 7 12 12 O 1.21566 * 119.99936 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99935 * 179.72905 * 11 10 9 14 14 C 1.38365 * 119.99993 * 179.97438 * 13 11 10 15 15 N 1.30130 * 124.74378 * 0.02562 * 14 13 11 16 16 C 1.30870 * 117.29380 * 180.02562 * 15 14 13 17 17 C 1.36712 * 114.01999 * 0.02562 * 16 15 14 18 18 C 1.46307 * 126.12128 * 180.02562 * 17 16 15 19 19 N 1.34778 * 120.00198 * 179.97438 * 18 17 16 20 20 O 1.21739 * 120.00188 * 359.97438 * 18 17 16 21 21 S 1.70922 * 124.74323 * 179.71985 * 14 13 11 22 22 H 0.96996 * 120.00207 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46743 * 60.00597 * 9 7 2 24 24 H 1.08994 * 109.47542 * 300.00456 * 9 7 2 25 25 H 0.97005 * 120.00261 * 0.02562 * 10 9 7 26 26 H 0.97004 * 120.00018 * 359.97438 * 13 11 10 27 27 H 1.07998 * 122.99411 * 179.97438 * 16 15 14 28 28 H 0.97002 * 120.00407 * 359.97438 * 19 18 17 29 29 H 0.97004 * 120.00121 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0010 11 6 5.3251 -2.8214 0.0020 12 8 6.1151 -1.8973 0.0025 13 7 5.7744 -4.0920 0.0074 14 6 7.1347 -4.3448 0.0079 15 7 8.0593 -3.4290 0.0038 16 6 9.3041 -3.8329 0.0044 17 6 9.4480 -5.1925 0.0088 18 6 10.7140 -5.9257 0.0109 19 7 10.7122 -7.2735 0.0158 20 8 11.7692 -5.3185 0.0084 21 16 7.8358 -5.9036 0.0213 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6799 0.8912 24 1 3.8753 -0.6802 -0.8887 25 1 3.3696 -3.3125 0.0002 26 1 5.1440 -4.8293 0.0110 27 1 10.1430 -3.1529 0.0009 28 1 9.8715 -7.7574 0.0182 29 1 11.5516 -7.7597 0.0169 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675162703.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:25 Heat of formation + Delta-G solvation = -40.802600 kcal Electronic energy + Delta-G solvation = -17240.505928 eV Core-core repulsion = 14096.841864 eV Total energy + Delta-G solvation = -3143.664064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.82070 -40.76329 -39.73381 -36.48514 -35.98094 -34.79354 -34.41733 -31.03572 -29.83600 -26.80379 -24.63974 -23.63739 -22.41589 -20.96135 -20.60323 -19.63826 -18.56655 -18.32495 -17.52869 -17.10530 -17.01273 -16.50155 -16.11380 -16.03630 -15.54551 -15.26601 -15.12302 -14.78595 -14.40946 -14.22064 -13.06176 -12.74236 -12.71395 -12.08528 -11.94396 -11.80721 -11.64494 -11.43957 -10.91681 -10.83337 -10.52890 -10.49214 -10.08103 -9.31336 -8.39582 -6.46314 -0.84504 -0.34181 0.34072 1.32939 1.34325 1.36545 1.48439 1.49971 2.03457 2.22976 2.28753 2.46159 2.92620 2.96529 3.58063 3.96023 4.19836 4.63303 4.76261 5.02527 5.06671 5.23245 5.38936 5.56104 5.79932 6.11461 6.25184 6.53506 6.62383 7.00634 7.17651 7.18615 7.43652 8.74652 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.056270 B = 0.003475 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.481810 B = 8056.328560 C = 8538.654276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.031 3.969 3 Si 0.932 3.068 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.250 3.750 10 N -0.706 5.706 11 C 0.689 3.311 12 O -0.581 6.581 13 N -0.624 5.624 14 C 0.283 3.717 15 N -0.532 5.532 16 C 0.150 3.850 17 C -0.350 4.350 18 C 0.611 3.389 19 N -0.827 5.827 20 O -0.577 6.577 21 S 0.287 5.713 22 H 0.272 0.728 23 H 0.014 0.986 24 H 0.013 0.987 25 H 0.411 0.589 26 H 0.442 0.558 27 H 0.186 0.814 28 H 0.413 0.587 29 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.464 -20.017 0.060 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.170 4.170 3 Si 0.756 3.244 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.126 3.874 10 N -0.361 5.361 11 C 0.386 3.614 12 O -0.455 6.455 13 N -0.279 5.279 14 C -0.083 4.083 15 N -0.253 5.253 16 C -0.010 4.010 17 C -0.476 4.476 18 C 0.396 3.604 19 N -0.391 5.391 20 O -0.459 6.459 21 S 0.540 5.460 22 H 0.082 0.918 23 H 0.032 0.968 24 H 0.031 0.969 25 H 0.248 0.752 26 H 0.283 0.717 27 H 0.203 0.797 28 H 0.244 0.756 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 15.770 -18.980 0.073 24.676 hybrid contribution -0.045 0.768 -0.027 0.769 sum 15.725 -18.212 0.046 24.062 Atomic orbital electron populations 1.69961 1.07561 1.28593 1.50601 1.25501 0.95464 1.02394 0.93665 0.85938 0.79312 0.79728 0.79403 1.19133 1.19920 1.18554 1.21235 0.89589 0.94762 1.52647 0.91626 1.19049 0.93275 0.79103 0.95962 1.45089 1.03667 1.10598 1.76701 1.16215 0.83436 0.82913 0.78798 1.91009 1.55484 1.43394 1.55652 1.41950 1.02930 1.08598 1.74398 1.24041 0.89316 0.95428 0.99500 1.66417 1.00411 1.36033 1.22475 1.22375 0.92762 0.92989 0.92909 1.25742 0.98035 0.97783 1.26045 1.16567 0.85888 0.83053 0.74940 1.43474 1.14090 1.05036 1.76529 1.90884 1.32853 1.69423 1.52707 1.82933 0.93988 1.01307 1.67816 0.91829 0.96796 0.96914 0.75234 0.71665 0.79708 0.75590 0.74709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 13.96 21.45 0.30 -53.76 15 2 C 0.03 1.68 5.47 84.65 0.46 2.14 15 3 Si 0.93 43.41 27.47 68.60 1.88 45.30 15 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.26 -12.16 6.54 99.48 0.65 -11.51 15 7 C -0.54 -28.80 9.83 25.60 0.25 -28.55 15 8 H 0.07 3.59 7.84 -2.91 -0.02 3.57 15 9 C 0.25 11.83 4.50 85.63 0.38 12.22 15 10 N -0.71 -26.28 5.55 -482.33 -2.68 -28.96 15 11 C 0.69 25.29 8.52 179.05 1.53 26.82 15 12 O -0.58 -27.26 14.94 -3.92 -0.06 -27.31 15 13 N -0.62 -15.51 5.38 -327.70 -1.76 -17.27 15 14 C 0.28 7.17 7.98 179.28 1.43 8.60 15 15 N -0.53 -17.33 8.55 -200.29 -1.71 -19.04 15 16 C 0.15 4.08 11.15 84.48 0.94 5.02 15 17 C -0.35 -7.15 6.50 24.01 0.16 -7.00 15 18 C 0.61 12.03 8.05 86.34 0.69 12.73 15 19 N -0.83 -7.66 8.87 -176.63 -1.57 -9.23 15 20 O -0.58 -16.41 17.70 -4.47 -0.08 -16.49 15 21 S 0.29 3.88 22.33 -56.49 -1.26 2.62 15 22 H 0.27 14.84 8.31 -92.71 -0.77 14.07 15 23 H 0.01 0.71 7.20 -2.39 -0.02 0.69 15 24 H 0.01 0.64 7.57 -2.39 -0.02 0.62 15 25 H 0.41 12.45 8.34 -92.70 -0.77 11.67 15 26 H 0.44 6.40 8.83 -92.71 -0.82 5.58 15 27 H 0.19 4.88 8.06 -2.91 -0.02 4.86 15 28 H 0.41 1.44 8.00 -92.71 -0.74 0.70 15 29 H 0.42 2.56 8.93 -92.71 -0.83 1.73 15 Total: -1.00 -80.11 280.59 -3.04 -83.15 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -1.95 Total: 9.01 kcal Atomic # 6 Polarization: 26.13 SS G_CDS: 5.85 Total: 31.98 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -7.42 Total: -128.25 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.14 Total: -43.80 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.30 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.26 Total: 2.62 kcal Total: -80.11 -3.04 -83.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675162703.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.348 kcal (2) G-P(sol) polarization free energy of solvation -80.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds