Wall clock time and date at job start Mon Mar 30 2020 01:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 S 1.76195 * 120.00186 * 179.72636 * 5 4 3 7 7 O 1.42101 * 106.40134 * 203.53747 * 6 5 4 8 8 O 1.42104 * 106.40234 * 336.45145 * 6 5 4 9 9 N 1.65591 * 107.22084 * 89.99343 * 6 5 4 10 10 N 1.36602 * 120.00233 * 274.99636 * 9 6 5 11 11 C 1.46497 * 120.00054 * 95.00243 * 9 6 5 12 12 C 1.50703 * 109.47555 * 90.00033 * 11 9 6 13 13 H 1.08005 * 119.99502 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00319 * 180.02562 * 12 11 9 15 15 N 1.31517 * 119.99749 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00079 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46798 * 90.00059 * 16 14 12 18 18 H 1.48494 * 109.47284 * 210.00379 * 16 14 12 19 19 H 1.48498 * 109.47189 * 330.00454 * 16 14 12 20 20 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 21 21 C 1.38234 * 120.00033 * 0.49775 * 20 5 4 22 22 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 23 23 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 24 24 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 25 25 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 26 26 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 27 27 H 1.00903 * 111.00436 * 179.97438 * 10 9 6 28 28 H 1.00893 * 111.00241 * 303.96227 * 10 9 6 29 29 H 1.08999 * 109.47573 * 209.99996 * 11 9 6 30 30 H 1.09004 * 109.47502 * 329.99842 * 11 9 6 31 31 H 0.96998 * 119.99649 * 179.97438 * 15 14 12 32 32 H 1.07999 * 119.99934 * 180.25938 * 20 5 4 33 33 H 1.08001 * 120.00294 * 179.76453 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 16 6.0337 0.0000 -0.0110 7 8 6.4329 -1.2487 -0.5594 8 8 6.4329 1.2507 -0.5547 9 7 6.5299 -0.0030 1.5688 10 7 6.6363 1.1742 2.2535 11 6 6.8548 -1.2681 2.2321 12 6 8.3167 -1.5774 2.0358 13 1 8.9411 -0.8994 1.4727 14 6 8.8567 -2.7261 2.5739 15 7 10.1323 -2.9962 2.4021 16 14 7.7766 -3.8990 3.5472 17 1 7.1848 -4.9046 2.6285 18 1 8.5962 -4.5893 4.5751 19 1 6.6899 -3.1354 4.2114 20 6 3.5805 -1.1972 0.0010 21 6 2.1982 -1.1972 0.0009 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.6582 2.1324 -0.0004 26 1 4.1205 2.1325 0.0001 27 1 6.9476 1.0152 3.2001 28 1 7.2485 1.8172 1.7743 29 1 6.6411 -1.1851 3.2977 30 1 6.2532 -2.0689 1.8022 31 1 10.5123 -3.8042 2.7810 32 1 4.1205 -2.1325 0.0013 33 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001581941.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:20 Heat of formation + Delta-G solvation = -52.492067 kcal Electronic energy + Delta-G solvation = -18780.255370 eV Core-core repulsion = 15739.624756 eV Total energy + Delta-G solvation = -3040.630614 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.26309 -38.39377 -38.18619 -36.95676 -34.80826 -33.94588 -32.02443 -31.42360 -28.26627 -27.97023 -24.20427 -23.80652 -22.82644 -20.29295 -19.53664 -19.01132 -18.41494 -17.88737 -16.69365 -16.36919 -16.12158 -15.90973 -15.67450 -15.35723 -14.72202 -14.60813 -14.50103 -14.17767 -13.64322 -13.24415 -13.20908 -13.11986 -13.08119 -13.05990 -12.80104 -12.73308 -12.36579 -12.07915 -11.81553 -11.69679 -11.44166 -10.84245 -10.06016 -10.02068 -9.03388 -8.35245 -6.43956 -0.70725 -0.16430 0.33679 1.35254 1.38798 1.47338 1.88912 2.31131 2.53970 2.81292 2.98025 3.18594 3.76233 3.88838 3.96666 3.98880 4.32332 4.37845 4.60532 4.68601 4.72847 4.73045 4.84975 4.96488 5.03958 5.12021 5.15927 5.27696 5.36094 5.49726 5.91925 6.08919 6.19383 6.56873 6.77065 7.21041 8.81845 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024187 B = 0.006371 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.389679 B = 4393.951989 C = 4983.155317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.031 4.031 3 C -0.145 4.145 4 C -0.022 4.022 5 C -0.681 4.681 6 S 2.711 3.289 7 O -0.982 6.982 8 O -0.988 6.988 9 N -0.847 5.847 10 N -0.578 5.578 11 C 0.217 3.783 12 C -0.555 4.555 13 H 0.027 0.973 14 C 0.013 3.987 15 N -0.944 5.944 16 Si 0.943 3.057 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.229 1.229 20 C -0.039 4.039 21 C -0.147 4.147 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.163 0.837 26 H 0.143 0.857 27 H 0.367 0.633 28 H 0.335 0.665 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.270 0.730 32 H 0.133 0.867 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.073 6.397 -0.755 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.032 4.032 3 C -0.164 4.164 4 C -0.041 4.041 5 C -0.773 4.773 6 S 2.805 3.195 7 O -0.971 6.971 8 O -0.978 6.978 9 N -0.772 5.772 10 N -0.205 5.205 11 C 0.092 3.908 12 C -0.594 4.594 13 H 0.045 0.955 14 C -0.186 4.186 15 N -0.583 5.583 16 Si 0.765 3.235 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.151 1.151 20 C -0.058 4.058 21 C -0.165 4.165 22 H 0.109 0.891 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.180 0.820 26 H 0.161 0.839 27 H 0.182 0.818 28 H 0.147 0.853 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.140 6.321 -1.556 23.077 hybrid contribution 1.325 -0.843 0.635 1.694 sum -20.815 5.478 -0.921 21.543 Atomic orbital electron populations 1.21010 0.87700 1.04732 1.04073 1.20729 0.98424 0.92583 0.91419 1.21544 0.93122 0.99669 1.02029 1.21119 0.95899 0.96050 0.91056 1.30562 1.24997 1.00999 1.20696 1.01076 0.75116 0.72156 0.71198 1.93565 1.82576 1.45160 1.75794 1.93449 1.82666 1.44790 1.76894 1.56897 1.81014 1.08055 1.31259 1.60581 1.56310 0.98199 1.05414 1.19708 0.94259 0.81378 0.95492 1.21664 0.94841 1.07938 1.34990 0.95493 1.25916 0.96428 0.99318 0.96907 1.70062 1.14422 1.27261 1.46549 0.85785 0.79640 0.79280 0.78834 1.19089 1.20244 1.15143 1.21136 0.96234 0.96199 0.92276 1.21498 0.92948 0.99839 1.02260 0.89070 0.89830 0.89489 0.81956 0.83882 0.81765 0.85293 0.91850 0.93763 0.92102 0.84933 0.82454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.01 71.24 0.71 -0.48 16 2 C -0.03 -0.58 5.88 -19.86 -0.12 -0.70 16 3 C -0.15 -2.96 9.70 22.27 0.22 -2.74 16 4 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 5 C -0.68 -22.32 5.97 22.27 0.13 -22.19 16 6 S 2.71 111.69 5.78 -56.49 -0.33 111.37 16 7 O -0.98 -47.93 16.20 -128.00 -2.07 -50.01 16 8 O -0.99 -42.43 16.55 -128.00 -2.12 -44.55 16 9 N -0.85 -34.79 3.71 -190.79 -0.71 -35.50 16 10 N -0.58 -19.71 10.21 37.02 0.38 -19.33 16 11 C 0.22 9.99 4.15 85.63 0.36 10.35 16 12 C -0.56 -32.02 9.94 25.60 0.25 -31.76 16 13 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 14 C 0.01 0.76 5.47 84.65 0.46 1.22 16 15 N -0.94 -59.17 13.96 21.45 0.30 -58.87 16 16 Si 0.94 42.01 27.47 68.60 1.88 43.90 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.23 -8.85 6.54 99.48 0.65 -8.20 16 20 C -0.04 -1.15 9.52 22.27 0.21 -0.94 16 21 C -0.15 -3.23 9.70 22.27 0.22 -3.02 16 22 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 23 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 24 H 0.09 0.65 8.09 -2.39 -0.02 0.63 16 25 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 26 H 0.14 3.70 7.62 -2.91 -0.02 3.67 16 27 H 0.37 11.41 8.53 -210.55 -1.79 9.61 16 28 H 0.34 11.17 8.67 -210.56 -1.82 9.35 16 29 H 0.06 2.63 6.97 -2.39 -0.02 2.61 16 30 H 0.04 2.00 7.08 -2.39 -0.02 1.98 16 31 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 32 H 0.13 4.01 7.62 -2.91 -0.02 3.99 16 33 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -77.12 297.78 -2.54 -79.66 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -2.53 Total: 23.98 kcal Atomic # 6 Polarization: -53.30 SS G_CDS: 2.66 Total: -50.65 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -0.03 Total: -113.70 kcal Atomic # 8 Polarization: -90.37 SS G_CDS: -4.19 Total: -94.56 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.88 Total: 43.90 kcal Atomic # 16 Polarization: 111.69 SS G_CDS: -0.33 Total: 111.37 kcal Total: -77.12 -2.54 -79.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001581941.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.166 kcal (2) G-P(sol) polarization free energy of solvation -77.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds