Wall clock time and date at job start Mon Mar 30 2020 02:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00053 * 2 1 4 4 C 1.50706 * 109.46667 * 274.56460 * 3 2 1 5 5 H 1.07997 * 120.00390 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99636 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00262 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99872 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47059 * 89.99881 * 8 6 4 10 10 H 1.48503 * 109.47253 * 209.99866 * 8 6 4 11 11 H 1.48497 * 109.47047 * 329.99993 * 8 6 4 12 12 S 1.65601 * 120.00092 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.39923 * 149.93530 * 12 2 1 14 14 O 1.42101 * 106.40051 * 17.02059 * 12 2 1 15 15 C 1.76193 * 107.22363 * 263.47820 * 12 2 1 16 16 C 1.38125 * 120.04177 * 245.33067 * 15 12 2 17 17 C 1.38259 * 120.07835 * 180.29020 * 16 15 12 18 18 C 1.38319 * 120.14719 * 359.45612 * 17 16 15 19 19 C 1.38078 * 120.07263 * 0.54341 * 18 17 16 20 20 C 1.38894 * 120.03340 * 65.34971 * 15 12 2 21 21 N 1.39672 * 120.08039 * 359.96152 * 20 15 12 22 22 H 1.09003 * 109.47384 * 270.00126 * 1 2 3 23 23 H 1.09000 * 109.47329 * 30.00796 * 1 2 3 24 24 H 1.09003 * 109.46859 * 150.00453 * 1 2 3 25 25 H 1.08996 * 109.47115 * 34.56219 * 3 2 1 26 26 H 1.09001 * 109.47260 * 154.56413 * 3 2 1 27 27 H 0.96994 * 120.00604 * 179.97438 * 7 6 4 28 28 H 1.08008 * 119.95942 * 0.02562 * 16 15 12 29 29 H 1.07995 * 119.92965 * 179.70209 * 17 16 15 30 30 H 1.07998 * 119.96048 * 180.27399 * 18 17 16 31 31 H 1.08002 * 120.03648 * 179.70549 * 19 18 17 32 32 H 0.96997 * 119.99309 * 0.14541 * 21 20 15 33 33 H 0.96997 * 120.00560 * 180.15035 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3507 1.7602 -1.4164 5 1 1.9428 1.1853 -2.2346 6 6 3.0106 2.9445 -1.6675 7 7 3.5060 3.6453 -0.6711 8 14 3.2012 3.5534 -3.4232 9 1 2.0426 4.4119 -3.7778 10 1 4.4549 4.3405 -3.5408 11 1 3.2575 2.3918 -4.3466 12 16 2.2930 -1.4341 0.0006 13 8 3.5153 -1.1920 -0.6824 14 8 1.3648 -2.4335 -0.3979 15 6 2.7194 -1.7896 1.6728 16 6 4.0454 -1.8107 2.0588 17 6 4.3812 -2.0954 3.3694 18 6 3.3906 -2.3491 4.3009 19 6 2.0630 -2.3296 3.9218 20 6 1.7224 -2.0494 2.6043 21 7 0.3804 -2.0285 2.2176 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8901 -0.5138 25 1 1.6463 2.0065 0.5830 26 1 3.1829 1.1194 0.4414 27 1 3.9706 4.4782 -0.8477 28 1 4.8212 -1.6086 1.3350 29 1 5.4190 -2.1160 3.6675 30 1 3.6561 -2.5668 5.3249 31 1 1.2903 -2.5324 4.6486 32 1 0.1440 -1.8346 1.2971 33 1 -0.3151 -2.2080 2.8695 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833416.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:44 Heat of formation + Delta-G solvation = -41.392576 kcal Electronic energy + Delta-G solvation = -19212.851824 eV Core-core repulsion = 16172.702520 eV Total energy + Delta-G solvation = -3040.149304 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.23397 -36.81310 -35.66521 -35.17896 -34.37799 -32.43427 -31.01460 -28.66798 -27.77323 -25.12962 -23.18049 -22.33344 -22.09336 -18.51267 -17.66804 -17.28044 -16.74041 -16.39337 -16.16309 -15.24851 -14.59277 -14.40837 -14.12367 -13.77195 -13.58388 -13.36609 -13.17935 -12.32415 -12.24279 -12.14401 -11.61601 -11.43973 -11.29292 -11.15874 -11.08960 -10.71767 -10.70176 -10.54552 -10.30789 -10.02014 -9.74708 -9.17529 -8.44119 -8.10505 -7.68552 -6.05382 -4.09441 0.96426 1.21103 1.65989 3.32484 3.39092 3.44965 3.55369 3.71836 3.89039 4.36775 4.46630 4.74481 4.98362 5.17976 5.29562 5.37059 5.51329 5.57314 5.77690 5.84127 5.99511 6.08192 6.15786 6.35335 6.48667 6.57132 6.85652 7.20309 7.32766 7.36512 7.55617 7.59329 7.91674 8.19910 8.92878 9.55590 11.03217 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.006533 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.010554 B = 4284.857739 C = 4602.826633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.989 5.989 3 C 0.257 3.743 4 C -0.528 4.528 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.688 3.312 13 O -0.942 6.942 14 O -0.985 6.985 15 C -0.746 4.746 16 C 0.026 3.974 17 C -0.201 4.201 18 C -0.027 4.027 19 C -0.220 4.220 20 C 0.309 3.691 21 N -0.872 5.872 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.264 0.736 28 H 0.142 0.858 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.403 0.597 33 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 -10.098 9.763 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.829 5.829 3 C 0.136 3.864 4 C -0.567 4.567 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.196 1.196 12 S 2.778 3.222 13 O -0.932 6.932 14 O -0.974 6.974 15 C -0.837 4.837 16 C 0.006 3.994 17 C -0.222 4.222 18 C -0.047 4.047 19 C -0.244 4.244 20 C 0.200 3.800 21 N -0.414 5.414 22 H 0.061 0.939 23 H 0.105 0.895 24 H 0.087 0.913 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.160 0.840 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.238 0.762 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -4.208 -10.421 9.076 14.445 hybrid contribution -0.191 0.641 -0.110 0.678 sum -4.398 -9.779 8.966 13.978 Atomic orbital electron populations 1.21525 0.80439 1.03961 1.00414 1.57353 1.13828 1.22860 1.88881 1.19092 0.91061 0.78485 0.97786 1.21485 1.36220 1.06253 0.92745 0.92023 1.24932 0.95119 0.96485 0.97501 1.69919 1.37459 1.15201 1.30919 0.86504 0.77517 0.78813 0.84678 1.20663 1.21058 1.19638 1.02007 0.73687 0.72607 0.73916 1.93583 1.44896 1.84579 1.70150 1.93470 1.63930 1.58442 1.81601 1.30664 1.00396 1.26631 1.26051 1.20800 0.93785 0.88234 0.96582 1.21010 0.99503 1.08044 0.93624 1.21099 0.92328 0.92311 0.98919 1.20617 0.97218 1.12151 0.94370 1.17163 0.83596 0.86869 0.92416 1.43255 1.04064 1.79084 1.15015 0.93911 0.89539 0.91336 0.94537 0.94403 0.92681 0.84004 0.85618 0.85745 0.85739 0.76205 0.76798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 9.00 59.84 0.54 1.91 16 2 N -0.99 -20.50 3.16 -123.05 -0.39 -20.89 16 3 C 0.26 6.46 5.07 -5.19 -0.03 6.43 16 4 C -0.53 -14.74 9.38 -34.44 -0.32 -15.07 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 S 2.69 55.10 5.07 -107.50 -0.55 54.55 16 13 O -0.94 -22.69 16.19 -57.17 -0.93 -23.61 16 14 O -0.98 -20.10 14.90 -57.17 -0.85 -20.95 16 15 C -0.75 -13.29 5.93 -39.38 -0.23 -13.52 16 16 C 0.03 0.43 9.54 -39.62 -0.38 0.05 16 17 C -0.20 -2.75 10.04 -39.54 -0.40 -3.15 16 18 C -0.03 -0.33 10.04 -39.61 -0.40 -0.73 16 19 C -0.22 -2.83 9.90 -39.38 -0.39 -3.22 16 20 C 0.31 4.74 6.71 -83.78 -0.56 4.17 16 21 N -0.87 -11.38 8.42 32.41 0.27 -11.10 16 22 H 0.04 0.59 7.03 -51.93 -0.37 0.22 16 23 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 24 H 0.07 1.03 6.77 -51.93 -0.35 0.68 16 25 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 26 H 0.04 1.01 7.80 -51.93 -0.41 0.60 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.14 2.34 7.33 -52.48 -0.38 1.96 16 29 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.40 5.70 3.30 -40.82 -0.13 5.56 16 33 H 0.40 3.73 8.84 -40.82 -0.36 3.37 16 LS Contribution 290.52 15.07 4.38 4.38 Total: -1.00 -33.71 290.52 -8.27 -41.98 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -3.66 Total: 5.71 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -2.27 Total: -21.47 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.62 Total: -57.34 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -1.78 Total: -44.56 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 55.10 SS G_CDS: -0.55 Total: 54.55 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.71 -8.27 -41.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833416.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.587 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds