Wall clock time and date at job start Mon Mar 30 2020 02:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00053 * 2 1 4 4 C 1.50706 * 109.46667 * 274.56460 * 3 2 1 5 5 H 1.07997 * 120.00390 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99636 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00262 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99872 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47059 * 89.99881 * 8 6 4 10 10 H 1.48503 * 109.47253 * 209.99866 * 8 6 4 11 11 H 1.48497 * 109.47047 * 329.99993 * 8 6 4 12 12 S 1.65601 * 120.00092 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.39923 * 149.93530 * 12 2 1 14 14 O 1.42101 * 106.40051 * 17.02059 * 12 2 1 15 15 C 1.76193 * 107.22363 * 263.47820 * 12 2 1 16 16 C 1.38125 * 120.04177 * 245.33067 * 15 12 2 17 17 C 1.38259 * 120.07835 * 180.29020 * 16 15 12 18 18 C 1.38319 * 120.14719 * 359.45612 * 17 16 15 19 19 C 1.38078 * 120.07263 * 0.54341 * 18 17 16 20 20 C 1.38894 * 120.03340 * 65.34971 * 15 12 2 21 21 N 1.39672 * 120.08039 * 359.96152 * 20 15 12 22 22 H 1.09003 * 109.47384 * 270.00126 * 1 2 3 23 23 H 1.09000 * 109.47329 * 30.00796 * 1 2 3 24 24 H 1.09003 * 109.46859 * 150.00453 * 1 2 3 25 25 H 1.08996 * 109.47115 * 34.56219 * 3 2 1 26 26 H 1.09001 * 109.47260 * 154.56413 * 3 2 1 27 27 H 0.96994 * 120.00604 * 179.97438 * 7 6 4 28 28 H 1.08008 * 119.95942 * 0.02562 * 16 15 12 29 29 H 1.07995 * 119.92965 * 179.70209 * 17 16 15 30 30 H 1.07998 * 119.96048 * 180.27399 * 18 17 16 31 31 H 1.08002 * 120.03648 * 179.70549 * 19 18 17 32 32 H 0.96997 * 119.99309 * 0.14541 * 21 20 15 33 33 H 0.96997 * 120.00560 * 180.15035 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3507 1.7602 -1.4164 5 1 1.9428 1.1853 -2.2346 6 6 3.0106 2.9445 -1.6675 7 7 3.5060 3.6453 -0.6711 8 14 3.2012 3.5534 -3.4232 9 1 2.0426 4.4119 -3.7778 10 1 4.4549 4.3405 -3.5408 11 1 3.2575 2.3918 -4.3466 12 16 2.2930 -1.4341 0.0006 13 8 3.5153 -1.1920 -0.6824 14 8 1.3648 -2.4335 -0.3979 15 6 2.7194 -1.7896 1.6728 16 6 4.0454 -1.8107 2.0588 17 6 4.3812 -2.0954 3.3694 18 6 3.3906 -2.3491 4.3009 19 6 2.0630 -2.3296 3.9218 20 6 1.7224 -2.0494 2.6043 21 7 0.3804 -2.0285 2.2176 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8901 -0.5138 25 1 1.6463 2.0065 0.5830 26 1 3.1829 1.1194 0.4414 27 1 3.9706 4.4782 -0.8477 28 1 4.8212 -1.6086 1.3350 29 1 5.4190 -2.1160 3.6675 30 1 3.6561 -2.5668 5.3249 31 1 1.2903 -2.5324 4.6486 32 1 0.1440 -1.8346 1.2971 33 1 -0.3151 -2.2080 2.8695 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833416.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:43 Heat of formation + Delta-G solvation = -66.752716 kcal Electronic energy + Delta-G solvation = -19213.951523 eV Core-core repulsion = 16172.702520 eV Total energy + Delta-G solvation = -3041.249002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33238 -38.42877 -37.36340 -36.86911 -35.54245 -34.49510 -32.13140 -29.92597 -29.49064 -26.83404 -24.46819 -24.07778 -23.26594 -19.98917 -19.15173 -18.67080 -18.42145 -17.80654 -17.65497 -16.98466 -16.25755 -15.70812 -15.36895 -15.08055 -14.99470 -14.83237 -14.45326 -14.08739 -13.95651 -13.39543 -13.30493 -13.04850 -13.04004 -12.93769 -12.49494 -12.43468 -12.38115 -11.99108 -11.84028 -11.73056 -11.58736 -10.59491 -10.31800 -9.81349 -8.76932 -8.20128 -6.32189 -0.53590 0.00001 0.56407 1.39265 1.42110 1.52882 2.06475 2.41816 2.61743 2.73070 2.87786 3.10602 3.38181 3.87636 4.02598 4.12996 4.41816 4.46306 4.58111 4.65942 4.70773 4.92713 5.00697 5.02842 5.16950 5.31781 5.42352 5.51829 5.67738 5.82004 5.87157 6.08902 6.24608 6.68966 6.75589 7.36472 8.87624 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.006533 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.010554 B = 4284.857739 C = 4602.826633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.996 5.996 3 C 0.273 3.727 4 C -0.548 4.548 5 H 0.054 0.946 6 C 0.012 3.988 7 N -0.924 5.924 8 Si 0.958 3.042 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.275 1.275 12 S 2.692 3.308 13 O -0.993 6.993 14 O -0.991 6.991 15 C -0.767 4.767 16 C -0.008 4.008 17 C -0.200 4.200 18 C -0.017 4.017 19 C -0.215 4.215 20 C 0.297 3.703 21 N -0.866 5.866 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.030 0.970 26 H 0.013 0.987 27 H 0.268 0.732 28 H 0.125 0.875 29 H 0.152 0.848 30 H 0.171 0.829 31 H 0.164 0.836 32 H 0.398 0.602 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 -10.780 11.737 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.835 5.835 3 C 0.150 3.850 4 C -0.587 4.587 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.200 1.200 12 S 2.787 3.213 13 O -0.983 6.983 14 O -0.981 6.981 15 C -0.863 4.863 16 C -0.028 4.028 17 C -0.221 4.221 18 C -0.036 4.036 19 C -0.238 4.238 20 C 0.186 3.814 21 N -0.409 5.409 22 H 0.092 0.908 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.048 0.952 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.143 0.857 29 H 0.169 0.831 30 H 0.188 0.812 31 H 0.182 0.818 32 H 0.231 0.769 33 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -5.219 -11.104 11.015 16.489 hybrid contribution 0.086 0.759 -0.574 0.955 sum -5.133 -10.345 10.441 15.569 Atomic orbital electron populations 1.21803 0.78088 1.04522 1.02690 1.57194 1.15409 1.21301 1.89599 1.18621 0.90310 0.79993 0.96080 1.21817 1.36424 1.06577 0.93902 0.92812 1.25756 0.94756 0.96702 1.01553 1.70011 1.37976 1.15630 1.32806 0.85556 0.78177 0.78267 0.79721 1.18913 1.20350 1.19972 1.01435 0.72630 0.72287 0.74979 1.93510 1.46869 1.85198 1.72735 1.93445 1.63845 1.58128 1.82669 1.30080 1.01830 1.30123 1.24259 1.20885 0.93192 0.90514 0.98170 1.21373 1.01586 1.06768 0.92373 1.21671 0.91560 0.89770 1.00582 1.21132 0.98743 1.10255 0.93652 1.17435 0.83785 0.86969 0.93175 1.43252 1.03922 1.78460 1.15234 0.90766 0.89934 0.89847 0.95161 0.96925 0.92338 0.85686 0.83055 0.81183 0.81840 0.76926 0.74576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.42 9.00 127.77 1.15 3.57 16 2 N -1.00 -42.32 3.16 -543.22 -1.72 -44.04 16 3 C 0.27 14.24 5.07 85.64 0.43 14.67 16 4 C -0.55 -31.52 9.38 25.60 0.24 -31.28 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.68 5.46 84.66 0.46 1.14 16 7 N -0.92 -54.76 13.29 21.45 0.28 -54.48 16 8 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 9 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 12 S 2.69 114.27 5.07 -56.49 -0.29 113.98 16 13 O -0.99 -50.87 16.19 -128.00 -2.07 -52.94 16 14 O -0.99 -41.06 14.90 -128.00 -1.91 -42.97 16 15 C -0.77 -27.45 5.93 22.40 0.13 -27.32 16 16 C -0.01 -0.26 9.54 22.25 0.21 -0.05 16 17 C -0.20 -5.05 10.04 22.29 0.22 -4.83 16 18 C -0.02 -0.34 10.04 22.25 0.22 -0.12 16 19 C -0.21 -4.63 9.90 22.40 0.22 -4.41 16 20 C 0.30 8.52 6.71 38.22 0.26 8.78 16 21 N -0.87 -20.67 8.42 -51.36 -0.43 -21.10 16 22 H 0.07 1.93 7.03 -2.39 -0.02 1.91 16 23 H 0.08 2.74 8.07 -2.39 -0.02 2.72 16 24 H 0.08 2.46 6.77 -2.39 -0.02 2.44 16 25 H 0.03 1.59 8.11 -2.39 -0.02 1.57 16 26 H 0.01 0.72 7.80 -2.39 -0.02 0.70 16 27 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 28 H 0.13 4.48 7.33 -2.91 -0.02 4.46 16 29 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 32 H 0.40 10.65 3.30 -92.71 -0.31 10.35 16 33 H 0.42 6.44 8.84 -92.71 -0.82 5.62 16 Total: -1.00 -75.09 290.52 -0.53 -75.62 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.02 Total: 18.68 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 3.56 Total: -39.84 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -1.87 Total: -119.62 kcal Atomic # 8 Polarization: -91.93 SS G_CDS: -3.98 Total: -95.91 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 114.27 SS G_CDS: -0.29 Total: 113.98 kcal Total: -75.09 -0.53 -75.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833416.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.863 kcal (2) G-P(sol) polarization free energy of solvation -75.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds