Wall clock time and date at job start Mon Mar 30 2020 01:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47366 * 2 1 4 4 C 1.46499 * 119.99833 * 275.00205 * 3 2 1 5 5 C 1.50694 * 109.47001 * 274.99800 * 4 3 2 6 6 H 1.08000 * 120.00399 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99888 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00093 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99945 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47246 * 59.99757 * 9 7 5 11 11 H 1.48497 * 109.47330 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47328 * 299.99538 * 9 7 5 13 13 S 1.65595 * 119.99917 * 94.99700 * 3 2 1 14 14 O 1.42108 * 106.40282 * 156.46453 * 13 3 2 15 15 O 1.42098 * 106.40450 * 23.54221 * 13 3 2 16 16 C 1.76201 * 107.22174 * 270.00394 * 13 3 2 17 17 C 1.38678 * 120.41768 * 270.25697 * 16 13 3 18 18 C 1.38627 * 118.41930 * 180.23930 * 17 16 13 19 19 C 1.38232 * 119.16085 * 359.75178 * 18 17 16 20 20 N 1.31857 * 120.76541 * 359.97438 * 19 18 17 21 21 C 1.31889 * 121.72235 * 0.02562 * 20 19 18 22 22 H 1.09004 * 109.46835 * 60.00164 * 1 2 3 23 23 H 1.08997 * 109.46906 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46917 * 299.99941 * 1 2 3 25 25 H 1.09002 * 109.47254 * 240.00229 * 2 1 3 26 26 H 1.09003 * 109.47336 * 119.99968 * 2 1 3 27 27 H 1.08998 * 109.47304 * 34.99777 * 4 3 2 28 28 H 1.09004 * 109.46705 * 154.99510 * 4 3 2 29 29 H 0.97002 * 120.00409 * 180.02562 * 8 7 5 30 30 H 1.07994 * 120.78944 * 359.96634 * 17 16 13 31 31 H 1.07997 * 120.42083 * 179.72800 * 18 17 16 32 32 H 1.07999 * 119.61954 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.61237 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4947 1.7888 -1.8823 6 1 4.1724 1.1117 -1.3836 7 6 3.8529 2.3613 -3.0844 8 7 3.0280 3.1862 -3.6915 9 14 5.5098 1.9654 -3.8506 10 1 5.6002 0.5055 -4.1075 11 1 5.6516 2.7026 -5.1318 12 1 6.5947 2.3727 -2.9220 13 16 2.4122 2.1202 1.4287 14 8 3.3284 3.1571 1.1049 15 8 2.7095 1.0799 2.3499 16 6 0.9555 2.9118 2.0254 17 6 0.6684 4.2193 1.6632 18 6 -0.4862 4.8034 2.1607 19 6 -1.3098 4.0665 2.9911 20 7 -1.0079 2.8232 3.3101 21 6 0.0819 2.2357 2.8554 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.3618 1.8097 -1.9453 28 1 2.0922 3.1803 -1.0755 29 1 3.2798 3.5888 -4.5374 30 1 1.3309 4.7709 1.0127 31 1 -0.7389 5.8213 1.9031 32 1 -2.2114 4.5141 3.3826 33 1 0.2961 1.2158 3.1389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454367.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:16 Heat of formation + Delta-G solvation = -37.163902 kcal Electronic energy + Delta-G solvation = -19120.475246 eV Core-core repulsion = 16080.509311 eV Total energy + Delta-G solvation = -3039.965935 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.06471 -36.76621 -36.13059 -35.27782 -32.72334 -32.62151 -31.48248 -30.03971 -26.66680 -23.99764 -23.70080 -23.16198 -21.73755 -18.64560 -17.73701 -17.02253 -16.59401 -16.47526 -16.16204 -15.38576 -14.45287 -14.38851 -14.08945 -13.86744 -13.41244 -13.18972 -13.01240 -12.56904 -12.13363 -12.02345 -11.73987 -11.52743 -11.43331 -11.04688 -10.97390 -10.93981 -10.51249 -10.49106 -10.18523 -10.01535 -9.83116 -9.57009 -9.45401 -8.47595 -8.14459 -6.10032 -4.14173 0.56327 0.96440 1.14584 3.32356 3.35966 3.38590 3.42190 3.72600 4.22113 4.32788 4.42374 4.54819 4.75245 4.89423 5.15170 5.24062 5.31228 5.37479 5.55105 5.66388 5.70076 5.87151 5.92718 5.94414 6.24341 6.48108 6.54367 6.58117 7.16333 7.32182 7.53149 7.70522 7.87245 8.15287 8.88050 9.51252 10.98553 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025458 B = 0.006451 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.566444 B = 4339.259194 C = 4556.865142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.115 3.885 3 N -0.979 5.979 4 C 0.256 3.744 5 C -0.530 4.530 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 S 2.688 3.312 14 O -0.939 6.939 15 O -0.972 6.972 16 C -0.728 4.728 17 C 0.028 3.972 18 C -0.195 4.195 19 C 0.139 3.861 20 N -0.501 5.501 21 C 0.194 3.806 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.264 0.736 30 H 0.154 0.846 31 H 0.143 0.857 32 H 0.160 0.840 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.549 -0.144 9.376 12.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.011 4.011 3 N -0.819 5.819 4 C 0.135 3.865 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.199 1.199 13 S 2.774 3.226 14 O -0.929 6.929 15 O -0.962 6.962 16 C -0.813 4.813 17 C 0.002 3.998 18 C -0.215 4.215 19 C -0.017 4.017 20 N -0.210 5.210 21 C 0.035 3.965 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.172 0.828 31 H 0.161 0.839 32 H 0.178 0.822 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.366 -0.459 10.164 13.172 hybrid contribution 0.572 0.691 -1.151 1.460 sum -7.793 0.232 9.012 11.917 Atomic orbital electron populations 1.22280 0.97262 1.01713 1.01994 1.21233 0.93036 0.82828 1.04004 1.57441 1.81063 1.21233 1.22120 1.19101 0.97649 0.91136 0.78644 1.21440 1.01970 1.27878 1.05604 0.92019 1.24921 0.97403 0.94765 0.96830 1.69902 1.36177 1.30180 1.17271 0.86565 0.84117 0.78461 0.78381 1.20138 1.21201 1.19939 1.02271 0.73840 0.73639 0.72868 1.93610 1.58092 1.57837 1.83314 1.93503 1.82991 1.56391 1.63347 1.32578 1.26331 1.07959 1.14412 1.21482 0.94534 0.91992 0.91815 1.22262 0.96440 1.02178 1.00655 1.23070 0.97634 0.89697 0.91293 1.67814 1.18316 1.11357 1.23543 1.22541 0.86996 0.99086 0.87858 0.91895 0.91870 0.93630 0.89202 0.90166 0.94418 0.94478 0.92598 0.82807 0.83877 0.82246 0.81367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.24 37.16 0.38 -2.04 16 2 C 0.12 1.91 6.40 -4.04 -0.03 1.88 16 3 N -0.98 -19.43 2.77 -115.66 -0.32 -19.75 16 4 C 0.26 6.13 5.10 -5.20 -0.03 6.11 16 5 C -0.53 -14.35 9.38 -34.44 -0.32 -14.67 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -25.44 13.29 55.43 0.74 -24.71 16 9 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 S 2.69 51.82 5.66 -107.50 -0.61 51.21 16 14 O -0.94 -21.37 16.34 -57.17 -0.93 -22.30 16 15 O -0.97 -19.16 15.86 -57.17 -0.91 -20.06 16 16 C -0.73 -11.76 5.99 -39.44 -0.24 -11.99 16 17 C 0.03 0.42 9.65 -39.28 -0.38 0.04 16 18 C -0.19 -2.30 10.11 -39.44 -0.40 -2.70 16 19 C 0.14 1.63 11.18 -17.54 -0.20 1.43 16 20 N -0.50 -7.08 10.36 -13.25 -0.14 -7.21 16 21 C 0.19 2.88 9.61 -17.55 -0.17 2.72 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.61 7.02 -51.93 -0.36 0.24 16 25 H 0.09 1.52 8.11 -51.93 -0.42 1.10 16 26 H 0.08 1.23 6.91 -51.93 -0.36 0.87 16 27 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 28 H 0.04 0.93 7.61 -51.93 -0.40 0.54 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.15 2.25 7.71 -52.49 -0.40 1.85 16 31 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.17 2.25 7.63 -52.49 -0.40 1.84 16 LS Contribution 299.88 15.07 4.52 4.52 Total: -1.00 -32.45 299.88 -8.15 -40.59 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.00 Total: -1.01 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -1.47 Total: -17.59 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.28 Total: -51.67 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.84 Total: -42.37 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 51.82 SS G_CDS: -0.61 Total: 51.21 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.45 -8.15 -40.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454367.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.430 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds