Wall clock time and date at job start Mon Mar 30 2020 02:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99967 * 2 1 4 4 C 1.52999 * 109.47108 * 84.99881 * 3 2 1 5 5 C 1.50706 * 109.46818 * 180.02562 * 4 3 2 6 6 C 1.38227 * 119.61686 * 125.02645 * 5 4 3 7 7 C 1.38627 * 119.15663 * 179.70253 * 6 5 4 8 8 C 1.38669 * 118.42388 * 0.51169 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.50231 * 8 7 6 10 10 N 1.31856 * 119.61480 * 304.99563 * 5 4 3 11 11 S 1.65605 * 119.99973 * 179.97438 * 2 1 3 12 12 O 1.42096 * 106.40152 * 23.54369 * 11 2 1 13 13 O 1.42098 * 106.40148 * 156.46321 * 11 2 1 14 14 C 1.76199 * 107.21589 * 269.99893 * 11 2 1 15 15 H 1.07994 * 120.00452 * 0.02562 * 14 11 2 16 16 C 1.37883 * 119.99874 * 180.02562 * 14 11 2 17 17 N 1.31519 * 119.99876 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00000 * 180.02562 * 16 14 11 19 19 H 1.48490 * 109.47315 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46841 * 120.00143 * 18 16 14 21 21 H 1.48504 * 109.46964 * 239.99538 * 18 16 14 22 22 H 1.08999 * 109.47210 * 90.00347 * 1 2 3 23 23 H 1.08996 * 109.47353 * 210.00303 * 1 2 3 24 24 H 1.08997 * 109.47254 * 330.00521 * 1 2 3 25 25 H 1.08994 * 109.46915 * 324.99449 * 3 2 1 26 26 H 1.09003 * 109.46953 * 205.00035 * 3 2 1 27 27 H 1.08998 * 109.47200 * 60.00285 * 4 3 2 28 28 H 1.08994 * 109.47201 * 300.00064 * 4 3 2 29 29 H 1.07998 * 120.41947 * 359.94797 * 6 5 4 30 30 H 1.08008 * 120.78691 * 180.26734 * 7 6 5 31 31 H 1.08002 * 120.42244 * 179.78749 * 8 7 6 32 32 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 33 33 H 0.96997 * 119.99988 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3436 1.7733 1.4370 5 6 3.0965 3.0788 1.4369 6 6 2.5367 4.1903 2.0383 7 6 3.2404 5.3847 2.0380 8 6 4.4816 5.4194 1.4208 9 6 4.9771 4.2677 0.8397 10 7 4.2820 3.1472 0.8636 11 16 2.2930 -1.4342 0.0006 12 8 1.4113 -2.4067 -0.5434 13 8 3.5759 -1.1570 -0.5438 14 6 2.5537 -1.8850 1.6839 15 1 2.1867 -1.2497 2.4763 16 6 3.2265 -3.0492 1.9895 17 7 3.6740 -3.8227 1.0246 18 14 3.5024 -3.5275 3.7740 19 1 2.9066 -2.4962 4.6607 20 1 2.8605 -4.8401 4.0394 21 1 4.9600 -3.6266 4.0402 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 1.6502 2.0042 -0.5895 26 1 3.1858 1.1177 -0.4343 27 1 2.8909 1.0378 2.0264 28 1 1.3553 1.9243 1.8713 29 1 1.5652 4.1281 2.5059 30 1 2.8298 6.2684 2.5040 31 1 5.0560 6.3338 1.3985 32 1 5.9448 4.2854 0.3605 33 1 4.1470 -4.6418 1.2395 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044292701.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:13 Heat of formation + Delta-G solvation = -57.428073 kcal Electronic energy + Delta-G solvation = -18645.174288 eV Core-core repulsion = 15604.329633 eV Total energy + Delta-G solvation = -3040.844655 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12324 -36.07675 -35.19417 -33.87660 -33.08021 -32.74545 -32.19601 -28.89779 -26.08722 -25.66898 -23.54708 -22.99961 -21.12880 -18.56641 -17.33842 -16.69120 -16.32983 -15.98234 -15.55061 -15.07549 -14.95369 -14.27990 -13.91180 -13.49174 -13.28224 -13.04264 -12.92448 -12.61913 -11.96656 -11.87577 -11.71320 -11.59729 -11.20199 -11.15907 -10.73971 -10.54970 -10.20394 -10.10972 -9.99644 -9.83931 -9.29710 -9.21022 -8.99633 -8.78306 -8.12989 -6.64595 -5.26015 1.14620 1.31666 2.34158 3.08334 3.16473 3.23264 3.85871 4.09115 4.37566 4.58493 4.69174 4.79584 4.89281 5.06747 5.14443 5.48864 5.57577 5.62187 5.72102 5.78226 5.87059 5.90522 6.10442 6.16216 6.18272 6.29482 6.31792 6.49597 6.62366 6.77153 6.86454 7.37435 7.65790 8.02482 8.13371 8.94217 10.29115 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.006086 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.342235 B = 4599.795404 C = 5191.746804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -1.018 6.018 3 C 0.134 3.866 4 C -0.099 4.099 5 C 0.145 3.855 6 C -0.174 4.174 7 C -0.077 4.077 8 C -0.188 4.188 9 C 0.104 3.896 10 N -0.473 5.473 11 S 2.712 3.288 12 O -1.005 7.005 13 O -0.999 6.999 14 C -1.017 5.017 15 H 0.102 0.898 16 C 0.133 3.867 17 N -0.846 5.846 18 Si 0.918 3.082 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.271 1.271 22 H 0.044 0.956 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.155 0.845 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 16.357 3.294 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.852 5.852 3 C 0.007 3.993 4 C -0.138 4.138 5 C 0.007 3.993 6 C -0.194 4.194 7 C -0.103 4.103 8 C -0.208 4.208 9 C -0.053 4.053 10 N -0.182 5.182 11 S 2.813 3.187 12 O -0.996 6.996 13 O -0.990 6.990 14 C -1.151 5.151 15 H 0.120 0.880 16 C -0.085 4.085 17 N -0.475 5.475 18 Si 0.742 3.258 19 H -0.187 1.187 20 H -0.196 1.196 21 H -0.196 1.196 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.172 0.828 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.026 14.997 2.011 15.266 hybrid contribution -0.244 0.740 2.088 2.229 sum -2.270 15.737 4.100 16.419 Atomic orbital electron populations 1.21242 0.80280 1.02137 1.00797 1.57956 1.14091 1.22113 1.91075 1.21033 0.98400 0.85491 0.94376 1.21172 0.99274 0.92894 1.00485 1.21365 0.90758 0.95336 0.91870 1.22008 1.01645 0.93551 1.02203 1.21533 0.94337 0.97847 0.96544 1.22098 0.97352 1.00151 1.01226 1.22829 0.99113 0.87885 0.95514 1.67609 1.06669 1.27839 1.16133 1.00622 0.71816 0.69681 0.76622 1.93352 1.67343 1.57875 1.81000 1.93359 1.40770 1.83920 1.80928 1.30645 1.49936 1.16788 1.17708 0.87970 1.24743 0.90172 0.93444 1.00094 1.69909 1.31116 1.12789 1.33727 0.86170 0.78716 0.78951 0.81940 1.18651 1.19642 1.19638 0.93784 0.91017 0.92488 0.91915 0.88020 0.88277 0.90175 0.84894 0.85192 0.85166 0.82809 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 10.31 59.84 0.62 2.34 16 2 N -1.02 -21.12 3.18 -121.76 -0.39 -21.51 16 3 C 0.13 2.45 5.52 -4.04 -0.02 2.43 16 4 C -0.10 -1.60 5.94 -27.88 -0.17 -1.77 16 5 C 0.14 2.18 6.18 -82.58 -0.51 1.67 16 6 C -0.17 -2.05 9.71 -39.44 -0.38 -2.43 16 7 C -0.08 -0.77 10.18 -39.28 -0.40 -1.17 16 8 C -0.19 -1.91 10.11 -39.44 -0.40 -2.31 16 9 C 0.10 1.31 11.18 -17.55 -0.20 1.12 16 10 N -0.47 -7.69 9.88 -9.47 -0.09 -7.78 16 11 S 2.71 73.89 4.93 -107.50 -0.53 73.36 16 12 O -1.01 -29.93 17.09 -57.17 -0.98 -30.91 16 13 O -1.00 -29.97 16.57 -57.17 -0.95 -30.92 16 14 C -1.02 -28.20 9.75 30.60 0.30 -27.90 16 15 H 0.10 2.58 7.81 -52.49 -0.41 2.17 16 16 C 0.13 3.76 5.46 -17.82 -0.10 3.66 16 17 N -0.85 -25.25 13.19 55.43 0.73 -24.52 16 18 Si 0.92 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 1.26 7.79 -51.93 -0.40 0.85 16 24 H 0.06 0.74 8.07 -51.93 -0.42 0.33 16 25 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 26 H 0.10 2.12 6.72 -51.93 -0.35 1.77 16 27 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 28 H 0.08 1.07 7.87 -51.93 -0.41 0.66 16 29 H 0.13 1.25 7.95 -52.49 -0.42 0.83 16 30 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.29 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -36.31 303.13 -7.99 -44.30 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -4.08 Total: 1.97 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -1.26 Total: -24.37 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.25 Total: -53.81 kcal Atomic # 8 Polarization: -59.90 SS G_CDS: -1.92 Total: -61.83 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 73.89 SS G_CDS: -0.53 Total: 73.36 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.31 -7.99 -44.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044292701.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.128 kcal (2) G-P(sol) polarization free energy of solvation -36.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds