Wall clock time and date at job start Mon Mar 30 2020 02:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99967 * 2 1 4 4 C 1.52999 * 109.47108 * 84.99881 * 3 2 1 5 5 C 1.50706 * 109.46818 * 180.02562 * 4 3 2 6 6 C 1.38227 * 119.61686 * 125.02645 * 5 4 3 7 7 C 1.38627 * 119.15663 * 179.70253 * 6 5 4 8 8 C 1.38669 * 118.42388 * 0.51169 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.50231 * 8 7 6 10 10 N 1.31856 * 119.61480 * 304.99563 * 5 4 3 11 11 S 1.65605 * 119.99973 * 179.97438 * 2 1 3 12 12 O 1.42096 * 106.40152 * 23.54369 * 11 2 1 13 13 O 1.42098 * 106.40148 * 156.46321 * 11 2 1 14 14 C 1.76199 * 107.21589 * 269.99893 * 11 2 1 15 15 H 1.07994 * 120.00452 * 0.02562 * 14 11 2 16 16 C 1.37883 * 119.99874 * 180.02562 * 14 11 2 17 17 N 1.31519 * 119.99876 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00000 * 180.02562 * 16 14 11 19 19 H 1.48490 * 109.47315 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46841 * 120.00143 * 18 16 14 21 21 H 1.48504 * 109.46964 * 239.99538 * 18 16 14 22 22 H 1.08999 * 109.47210 * 90.00347 * 1 2 3 23 23 H 1.08996 * 109.47353 * 210.00303 * 1 2 3 24 24 H 1.08997 * 109.47254 * 330.00521 * 1 2 3 25 25 H 1.08994 * 109.46915 * 324.99449 * 3 2 1 26 26 H 1.09003 * 109.46953 * 205.00035 * 3 2 1 27 27 H 1.08998 * 109.47200 * 60.00285 * 4 3 2 28 28 H 1.08994 * 109.47201 * 300.00064 * 4 3 2 29 29 H 1.07998 * 120.41947 * 359.94797 * 6 5 4 30 30 H 1.08008 * 120.78691 * 180.26734 * 7 6 5 31 31 H 1.08002 * 120.42244 * 179.78749 * 8 7 6 32 32 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 33 33 H 0.96997 * 119.99988 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3436 1.7733 1.4370 5 6 3.0965 3.0788 1.4369 6 6 2.5367 4.1903 2.0383 7 6 3.2404 5.3847 2.0380 8 6 4.4816 5.4194 1.4208 9 6 4.9771 4.2677 0.8397 10 7 4.2820 3.1472 0.8636 11 16 2.2930 -1.4342 0.0006 12 8 1.4113 -2.4067 -0.5434 13 8 3.5759 -1.1570 -0.5438 14 6 2.5537 -1.8850 1.6839 15 1 2.1867 -1.2497 2.4763 16 6 3.2265 -3.0492 1.9895 17 7 3.6740 -3.8227 1.0246 18 14 3.5024 -3.5275 3.7740 19 1 2.9066 -2.4962 4.6607 20 1 2.8605 -4.8401 4.0394 21 1 4.9600 -3.6266 4.0402 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 1.6502 2.0042 -0.5895 26 1 3.1858 1.1177 -0.4343 27 1 2.8909 1.0378 2.0264 28 1 1.3553 1.9243 1.8713 29 1 1.5652 4.1281 2.5059 30 1 2.8298 6.2684 2.5040 31 1 5.0560 6.3338 1.3985 32 1 5.9448 4.2854 0.3605 33 1 4.1470 -4.6418 1.2395 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044292701.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:12 Heat of formation + Delta-G solvation = -85.516744 kcal Electronic energy + Delta-G solvation = -18646.392304 eV Core-core repulsion = 15604.329633 eV Total energy + Delta-G solvation = -3042.062672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.05993 -37.61334 -37.38057 -36.12915 -35.17334 -33.88486 -33.14755 -30.06724 -28.26278 -27.00771 -24.60568 -24.14647 -22.30941 -20.61880 -19.15863 -18.29022 -17.63604 -17.18744 -16.92016 -16.88180 -16.27694 -15.95734 -15.40065 -15.07285 -14.57618 -14.42904 -14.06729 -13.95817 -13.63878 -13.47220 -13.12663 -13.07236 -13.03257 -12.59914 -12.47961 -12.45598 -12.28913 -12.05625 -11.73473 -11.26429 -10.96037 -10.73723 -10.27474 -9.96521 -9.64700 -8.73698 -7.46712 0.22580 0.34028 0.47385 1.31932 1.32666 1.50362 2.20099 2.58221 2.80476 2.94393 3.47861 3.75879 3.87484 4.04518 4.12640 4.24648 4.26815 4.33082 4.39718 4.56197 4.61302 4.76658 4.80569 4.87778 4.96164 4.98668 5.21166 5.22205 5.32622 5.33831 5.38231 5.88817 5.92018 6.01348 6.78827 7.20480 8.22108 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.006086 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.342235 B = 4599.795404 C = 5191.746804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.013 6.013 3 C 0.133 3.867 4 C -0.092 4.092 5 C 0.113 3.887 6 C -0.168 4.168 7 C -0.073 4.073 8 C -0.174 4.174 9 C 0.080 3.920 10 N -0.525 5.525 11 S 2.712 3.288 12 O -1.042 7.042 13 O -1.042 7.042 14 C -1.032 5.032 15 H 0.121 0.879 16 C 0.068 3.932 17 N -0.897 5.897 18 Si 0.989 3.011 19 H -0.245 1.245 20 H -0.257 1.257 21 H -0.262 1.262 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.105 0.895 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.112 0.888 29 H 0.160 0.840 30 H 0.170 0.830 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.884 19.236 5.658 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.851 5.851 3 C 0.007 3.993 4 C -0.131 4.131 5 C -0.025 4.025 6 C -0.188 4.188 7 C -0.099 4.099 8 C -0.194 4.194 9 C -0.077 4.077 10 N -0.235 5.235 11 S 2.814 3.186 12 O -1.032 7.032 13 O -1.032 7.032 14 C -1.166 5.166 15 H 0.139 0.861 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.807 3.193 19 H -0.168 1.168 20 H -0.181 1.181 21 H -0.187 1.187 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.124 0.876 25 H 0.114 0.886 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.131 0.869 29 H 0.177 0.823 30 H 0.187 0.813 31 H 0.183 0.817 32 H 0.183 0.817 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.232 17.887 4.353 18.691 hybrid contribution 0.121 0.006 1.282 1.288 sum -3.112 17.894 5.635 19.016 Atomic orbital electron populations 1.21586 0.77533 1.04016 1.02255 1.57417 1.15692 1.20903 1.91101 1.21155 0.96786 0.84730 0.96655 1.21047 1.00796 0.93109 0.98195 1.21257 0.91102 0.95776 0.94345 1.22262 1.02625 0.92926 1.00956 1.22031 0.93850 0.98456 0.95583 1.22488 0.97567 1.00279 0.99047 1.23181 0.99724 0.88157 0.96609 1.67476 1.08027 1.30180 1.17865 1.00206 0.71168 0.70586 0.76682 1.93289 1.67848 1.60363 1.81731 1.93296 1.43278 1.84897 1.81765 1.30954 1.49977 1.17368 1.18293 0.86095 1.26051 0.89471 0.93280 1.05635 1.70010 1.32418 1.13814 1.36591 0.85119 0.79272 0.79539 0.75342 1.16753 1.18072 1.18676 0.92655 0.92089 0.87616 0.88550 0.91712 0.91786 0.86935 0.82253 0.81268 0.81672 0.81693 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.93 10.31 127.77 1.32 4.25 16 2 N -1.01 -42.27 3.18 -539.14 -1.72 -43.99 16 3 C 0.13 4.87 5.52 86.38 0.48 5.35 16 4 C -0.09 -2.93 5.94 29.85 0.18 -2.76 16 5 C 0.11 3.28 6.18 42.55 0.26 3.54 16 6 C -0.17 -3.40 9.71 22.36 0.22 -3.18 16 7 C -0.07 -1.16 10.18 22.47 0.23 -0.93 16 8 C -0.17 -2.96 10.11 22.36 0.23 -2.74 16 9 C 0.08 1.95 11.18 84.67 0.95 2.90 16 10 N -0.53 -17.27 9.88 -183.88 -1.82 -19.09 16 11 S 2.71 153.51 4.93 -56.49 -0.28 153.24 16 12 O -1.04 -64.56 17.09 -128.00 -2.19 -66.75 16 13 O -1.04 -66.19 16.57 -128.00 -2.12 -68.31 16 14 C -1.03 -58.38 9.75 67.74 0.66 -57.72 16 15 H 0.12 6.13 7.81 -2.91 -0.02 6.10 16 16 C 0.07 3.89 5.46 84.66 0.46 4.35 16 17 N -0.90 -55.29 13.19 21.45 0.28 -55.01 16 18 Si 0.99 42.37 29.54 68.60 2.03 44.40 16 19 H -0.24 -9.66 7.11 99.48 0.71 -8.95 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 21 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 22 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.06 2.10 7.79 -2.39 -0.02 2.08 16 24 H 0.11 2.37 8.07 -2.39 -0.02 2.36 16 25 H 0.10 2.85 8.11 -2.39 -0.02 2.83 16 26 H 0.06 2.86 6.72 -2.39 -0.02 2.85 16 27 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.11 2.71 7.87 -2.39 -0.02 2.69 16 29 H 0.16 2.26 7.95 -2.91 -0.02 2.24 16 30 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.30 16.45 8.31 -92.71 -0.77 15.68 16 Total: -1.00 -84.22 303.13 0.27 -83.96 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 1.10 Total: 18.48 kcal Atomic # 6 Polarization: -51.90 SS G_CDS: 4.98 Total: -46.93 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -3.25 Total: -118.09 kcal Atomic # 8 Polarization: -130.75 SS G_CDS: -4.31 Total: -135.06 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 153.51 SS G_CDS: -0.28 Total: 153.24 kcal Total: -84.22 0.27 -83.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044292701.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.559 kcal (2) G-P(sol) polarization free energy of solvation -84.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds