Wall clock time and date at job start Mon Mar 30 2020 01:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47296 * 2 1 4 4 C 1.46505 * 119.99594 * 85.00064 * 3 2 1 5 5 C 1.50703 * 109.47064 * 85.00244 * 4 3 2 6 6 C 1.38650 * 120.78792 * 269.71459 * 5 4 3 7 7 C 1.38207 * 119.16129 * 179.79528 * 6 5 4 8 8 N 1.31868 * 120.76474 * 0.49389 * 7 6 5 9 9 C 1.31874 * 121.72157 * 359.73831 * 8 7 6 10 10 C 1.38199 * 120.77057 * 0.02562 * 9 8 7 11 11 S 1.65591 * 120.00456 * 265.00172 * 3 2 1 12 12 O 1.42104 * 106.40084 * 23.54037 * 11 3 2 13 13 O 1.42103 * 106.40538 * 156.45682 * 11 3 2 14 14 C 1.76204 * 107.21896 * 270.00073 * 11 3 2 15 15 H 1.07995 * 119.99892 * 359.97438 * 14 11 3 16 16 C 1.37880 * 119.99785 * 179.97438 * 14 11 3 17 17 N 1.31514 * 119.99277 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 120.00229 * 359.97438 * 16 14 11 19 19 H 1.48500 * 109.46797 * 90.00089 * 18 16 14 20 20 H 1.48492 * 109.46979 * 209.99974 * 18 16 14 21 21 H 1.48504 * 109.47245 * 330.00339 * 18 16 14 22 22 H 1.09001 * 109.47250 * 59.99599 * 1 2 3 23 23 H 1.09006 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47223 * 299.99818 * 1 2 3 25 25 H 1.08999 * 109.47223 * 240.00182 * 2 1 3 26 26 H 1.09001 * 109.47250 * 120.00401 * 2 1 3 27 27 H 1.09002 * 109.47068 * 205.00213 * 4 3 2 28 28 H 1.09001 * 109.47372 * 325.00300 * 4 3 2 29 29 H 1.07998 * 120.42060 * 0.02562 * 6 5 4 30 30 H 1.07997 * 119.61581 * 180.20726 * 7 6 5 31 31 H 1.07998 * 119.61429 * 180.02562 * 9 8 7 32 32 H 1.07997 * 120.42263 * 179.97438 * 10 9 8 33 33 H 0.97005 * 119.99470 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 1.2640 5 6 3.4948 1.7887 1.8824 6 6 3.6342 0.7244 2.7601 7 6 4.8765 0.4586 3.3043 8 7 5.9186 1.2092 3.0051 9 6 5.8219 2.2319 2.1781 10 6 4.6130 2.5552 1.5917 11 16 2.4121 2.1202 -1.4285 12 8 1.6868 1.4416 -2.4447 13 8 2.3056 3.5187 -1.1997 14 6 4.1170 1.7941 -1.7319 15 1 4.6870 1.2038 -1.0298 16 6 4.7231 2.2925 -2.8656 17 7 5.9956 2.0494 -3.0917 18 14 3.7368 3.3129 -4.0803 19 1 3.8216 4.7472 -3.7054 20 1 4.2875 3.1249 -5.4465 21 1 2.3172 2.8776 -4.0546 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.0921 3.1802 1.0757 28 1 1.3617 1.8096 1.9454 29 1 2.7836 0.1086 3.0123 30 1 4.9941 -0.3706 3.9862 31 1 6.6977 2.8237 1.9566 32 1 4.5402 3.3942 0.9157 33 1 6.4222 2.4004 -3.8891 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044298921.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:17 Heat of formation + Delta-G solvation = -43.926621 kcal Electronic energy + Delta-G solvation = -19398.466585 eV Core-core repulsion = 16358.207397 eV Total energy + Delta-G solvation = -3040.259188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.82297 -36.49739 -35.80343 -34.49221 -33.06954 -32.70369 -30.86584 -29.75709 -26.43539 -26.00193 -23.22269 -22.47915 -21.43828 -18.75219 -17.46108 -16.88543 -16.32114 -15.97367 -15.55254 -15.30155 -15.14452 -14.01443 -13.59731 -13.53765 -13.37454 -13.30911 -13.12029 -12.78528 -12.29104 -12.21944 -11.84703 -11.42710 -11.34747 -11.03301 -10.92187 -10.66492 -10.58764 -10.44527 -9.88311 -9.41751 -9.30038 -9.21683 -9.09014 -8.78420 -8.39032 -6.81918 -5.35687 1.45762 1.51904 2.01570 3.04213 3.13918 3.23502 3.91950 4.00059 4.27341 4.56610 4.76734 4.92616 5.00285 5.28398 5.32929 5.35774 5.43883 5.55478 5.64023 5.70807 5.82921 5.91742 5.99804 6.04916 6.12851 6.20157 6.32291 6.49786 6.53838 6.72562 7.04841 7.27700 7.46473 8.21902 8.28332 8.68765 10.30076 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.009678 C = 0.007185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.049381 B = 2892.503755 C = 3895.993191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.124 3.876 3 N -0.995 5.995 4 C 0.159 3.841 5 C -0.061 4.061 6 C -0.162 4.162 7 C 0.086 3.914 8 N -0.490 5.490 9 C 0.099 3.901 10 C -0.138 4.138 11 S 2.670 3.330 12 O -1.004 7.004 13 O -1.009 7.009 14 C -1.010 5.010 15 H 0.122 0.878 16 C 0.155 3.845 17 N -0.820 5.820 18 Si 0.797 3.203 19 H -0.246 1.246 20 H -0.255 1.255 21 H -0.221 1.221 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.144 0.856 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 -2.159 9.951 11.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.002 4.002 3 N -0.829 5.829 4 C 0.033 3.967 5 C -0.071 4.071 6 C -0.183 4.183 7 C -0.072 4.072 8 N -0.199 5.199 9 C -0.057 4.057 10 C -0.159 4.159 11 S 2.773 3.227 12 O -0.994 6.994 13 O -1.000 7.000 14 C -1.145 5.145 15 H 0.139 0.861 16 C -0.065 4.065 17 N -0.449 5.449 18 Si 0.617 3.383 19 H -0.170 1.170 20 H -0.179 1.179 21 H -0.143 1.143 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.147 0.853 30 H 0.166 0.834 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.628 -1.862 9.701 11.369 hybrid contribution -0.280 0.217 -0.915 0.981 sum -5.908 -1.645 8.786 10.715 Atomic orbital electron populations 1.22226 0.96667 1.01780 1.02361 1.21095 0.93751 0.82335 1.02991 1.57586 1.81155 1.22933 1.21189 1.20142 0.92455 0.98253 0.85867 1.20824 0.97040 0.94480 0.94743 1.21952 0.99137 0.98223 0.98980 1.22612 0.88494 0.97912 0.98134 1.67621 1.32655 1.05342 1.14287 1.22714 0.97167 0.93563 0.92246 1.22275 0.93172 1.01255 0.99181 1.01636 0.77335 0.72844 0.70912 1.93462 1.75351 1.75404 1.55163 1.93387 1.89417 1.32534 1.84623 1.30467 1.18700 1.47721 1.17614 0.86054 1.24403 0.94517 0.91910 0.95634 1.69998 1.10209 1.38416 1.26257 0.87932 0.84176 0.83184 0.82978 1.17018 1.17899 1.14289 0.91812 0.91977 0.92831 0.89741 0.91354 0.87868 0.89845 0.85312 0.83376 0.82848 0.83857 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.15 0.38 -1.95 16 2 C 0.12 1.97 6.06 -4.05 -0.02 1.94 16 3 N -0.99 -18.58 2.77 -115.66 -0.32 -18.90 16 4 C 0.16 2.50 5.86 -5.19 -0.03 2.47 16 5 C -0.06 -0.97 5.50 -104.32 -0.57 -1.55 16 6 C -0.16 -2.24 9.55 -39.44 -0.38 -2.61 16 7 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 8 N -0.49 -8.18 10.36 -13.25 -0.14 -8.31 16 9 C 0.10 1.68 11.18 -17.55 -0.20 1.48 16 10 C -0.14 -2.42 9.82 -39.44 -0.39 -2.81 16 11 S 2.67 65.00 4.15 -107.50 -0.45 64.56 16 12 O -1.00 -26.30 14.99 -57.17 -0.86 -27.16 16 13 O -1.01 -25.73 15.39 -57.17 -0.88 -26.61 16 14 C -1.01 -27.36 10.29 30.60 0.31 -27.05 16 15 H 0.12 3.40 8.06 -52.49 -0.42 2.97 16 16 C 0.15 4.36 5.47 -17.82 -0.10 4.26 16 17 N -0.82 -23.26 13.96 55.43 0.77 -22.48 16 18 Si 0.80 20.24 26.54 -169.99 -4.51 15.73 16 19 H -0.25 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.25 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.22 -5.73 5.60 56.52 0.32 -5.41 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.46 7.61 -51.93 -0.40 1.07 16 26 H 0.07 0.89 7.78 -51.93 -0.40 0.49 16 27 H 0.10 1.68 6.88 -51.93 -0.36 1.32 16 28 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 29 H 0.13 1.38 8.00 -52.49 -0.42 0.96 16 30 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.14 2.62 8.06 -52.49 -0.42 2.20 16 33 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 296.40 15.07 4.47 4.47 Total: -1.00 -32.29 296.40 -7.27 -39.57 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.17 Total: 3.94 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -1.19 Total: -24.80 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.32 Total: -49.70 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -1.74 Total: -53.77 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.51 Total: 15.73 kcal Atomic # 16 Polarization: 65.00 SS G_CDS: -0.45 Total: 64.56 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.29 -7.27 -39.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044298921.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.360 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds