Wall clock time and date at job start Mon Mar 30 2020 02:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00392 * 2 1 4 4 C 1.53003 * 109.47028 * 275.00088 * 3 2 1 5 5 C 1.50703 * 109.46890 * 179.97438 * 4 3 2 6 6 C 1.38654 * 120.78409 * 90.00032 * 5 4 3 7 7 C 1.38209 * 119.15786 * 180.02562 * 6 5 4 8 8 N 1.31870 * 120.76375 * 0.26353 * 7 6 5 9 9 C 1.31872 * 121.72489 * 359.46946 * 8 7 6 10 10 C 1.38200 * 120.76402 * 0.52682 * 9 8 7 11 11 S 1.65599 * 119.99618 * 180.02562 * 2 1 3 12 12 O 1.42105 * 106.40626 * 23.53713 * 11 2 1 13 13 O 1.42098 * 106.40417 * 156.45962 * 11 2 1 14 14 C 1.76209 * 107.21477 * 269.99755 * 11 2 1 15 15 H 1.07996 * 119.99761 * 0.02562 * 14 11 2 16 16 C 1.37874 * 119.99602 * 180.02562 * 14 11 2 17 17 N 1.31520 * 119.99782 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 120.00593 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.47206 * 89.99850 * 18 16 14 20 20 H 1.48501 * 109.47465 * 210.00116 * 18 16 14 21 21 H 1.48503 * 109.47059 * 330.00643 * 18 16 14 22 22 H 1.09000 * 109.47371 * 89.99603 * 1 2 3 23 23 H 1.08995 * 109.47570 * 210.00012 * 1 2 3 24 24 H 1.09004 * 109.46782 * 329.99995 * 1 2 3 25 25 H 1.08996 * 109.47037 * 155.00371 * 3 2 1 26 26 H 1.09002 * 109.46620 * 35.00092 * 3 2 1 27 27 H 1.08996 * 109.46980 * 60.00248 * 4 3 2 28 28 H 1.08997 * 109.47418 * 299.99989 * 4 3 2 29 29 H 1.07995 * 120.42251 * 0.04566 * 6 5 4 30 30 H 1.08002 * 119.61346 * 179.97438 * 7 6 5 31 31 H 1.08004 * 119.61160 * 180.27376 * 9 8 7 32 32 H 1.08003 * 120.41583 * 179.72635 * 10 9 8 33 33 H 0.97006 * 119.99830 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3437 1.7732 -1.4370 5 6 3.0968 3.0786 -1.4369 6 6 4.4792 3.1003 -1.5406 7 6 5.1358 4.3165 -1.5365 8 7 4.4632 5.4458 -1.4306 9 6 3.1480 5.4632 -1.3353 10 6 2.4238 4.2862 -1.3326 11 16 2.2929 -1.4342 -0.0006 12 8 1.4112 -2.4064 -0.5455 13 8 3.5758 -1.1567 -0.5449 14 6 2.5537 -1.8865 1.6823 15 1 2.1866 -1.2518 2.4751 16 6 3.2263 -3.0509 1.9868 17 7 3.4215 -3.3883 3.2429 18 14 3.8607 -4.1492 0.6154 19 1 5.2411 -3.7399 0.2518 20 1 3.8680 -5.5612 1.0753 21 1 2.9773 -4.0196 -0.5712 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 3.1858 1.1175 0.4342 26 1 1.6502 2.0042 0.5895 27 1 1.3555 1.9243 -1.8713 28 1 2.8910 1.0377 -2.0265 29 1 5.0360 2.1786 -1.6237 30 1 6.2125 4.3420 -1.6164 31 1 2.6313 6.4082 -1.2545 32 1 1.3471 4.3069 -1.2499 33 1 3.8944 -4.2077 3.4572 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509791.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:20 Heat of formation + Delta-G solvation = -46.522084 kcal Electronic energy + Delta-G solvation = -18578.614959 eV Core-core repulsion = 15538.243223 eV Total energy + Delta-G solvation = -3040.371736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.14808 -36.50804 -35.72961 -34.47979 -33.59946 -33.05397 -31.19223 -29.30706 -26.43543 -25.89286 -23.45704 -23.30523 -21.31547 -18.80680 -17.39114 -16.85485 -16.62512 -16.28187 -15.63109 -15.34180 -15.24013 -14.19576 -13.87855 -13.77072 -13.56734 -13.26164 -13.21407 -12.83117 -12.42757 -12.22421 -12.14491 -11.65853 -11.45464 -11.24691 -10.88982 -10.68930 -10.56041 -10.50483 -9.86894 -9.64421 -9.49943 -9.24688 -9.17266 -9.15153 -8.34925 -6.84005 -5.38371 1.13137 1.24160 1.95202 3.03963 3.14124 3.23051 3.80175 3.91529 4.07334 4.44470 4.55218 4.72694 4.77153 5.09902 5.17224 5.20073 5.27552 5.43534 5.46009 5.60660 5.66783 5.78860 5.85383 5.92100 6.01260 6.11050 6.13263 6.27116 6.40712 6.55271 6.71651 7.27842 7.44775 7.95100 8.17522 8.66737 10.28450 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029152 B = 0.005393 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.253952 B = 5190.249685 C = 5568.159556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.006 6.006 3 C 0.138 3.862 4 C -0.108 4.108 5 C -0.029 4.029 6 C -0.165 4.165 7 C 0.097 3.903 8 N -0.494 5.494 9 C 0.094 3.906 10 C -0.172 4.172 11 S 2.674 3.326 12 O -1.005 7.005 13 O -1.007 7.007 14 C -1.018 5.018 15 H 0.121 0.879 16 C 0.153 3.847 17 N -0.823 5.823 18 Si 0.801 3.199 19 H -0.245 1.245 20 H -0.254 1.254 21 H -0.220 1.220 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.142 0.858 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.133 0.867 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.627 12.302 -7.235 14.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.841 5.841 3 C 0.011 3.989 4 C -0.148 4.148 5 C -0.037 4.037 6 C -0.185 4.185 7 C -0.059 4.059 8 N -0.204 5.204 9 C -0.063 4.063 10 C -0.192 4.192 11 S 2.776 3.224 12 O -0.996 6.996 13 O -0.997 6.997 14 C -1.152 5.152 15 H 0.139 0.861 16 C -0.067 4.067 17 N -0.452 5.452 18 Si 0.621 3.379 19 H -0.169 1.169 20 H -0.178 1.178 21 H -0.142 1.142 22 H 0.065 0.935 23 H 0.093 0.907 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.159 0.841 30 H 0.172 0.828 31 H 0.170 0.830 32 H 0.151 0.849 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.884 12.528 -7.858 14.908 hybrid contribution -0.236 -1.272 0.393 1.352 sum -2.120 11.256 -7.465 13.671 Atomic orbital electron populations 1.21335 0.79455 1.02790 1.01014 1.57479 1.14411 1.21275 1.90924 1.21060 0.97599 0.85697 0.94506 1.21222 1.00341 0.93422 0.99775 1.20316 0.94028 0.95348 0.94046 1.22267 0.94802 1.00266 1.01190 1.22762 1.00366 0.87626 0.95177 1.67652 1.09356 1.30878 1.12506 1.22697 0.89961 0.97962 0.95672 1.22064 1.01443 0.92960 1.02742 1.01537 0.72572 0.70932 0.77323 1.93462 1.66948 1.57872 1.81273 1.93395 1.40903 1.84042 1.81355 1.30530 1.50443 1.18005 1.16206 0.86136 1.24440 0.90876 0.95377 0.95987 1.69993 1.34032 1.23406 1.17740 0.87874 0.83412 0.82570 0.84071 1.16922 1.17810 1.14184 0.93522 0.90694 0.91969 0.89483 0.90964 0.90287 0.89425 0.84062 0.82794 0.83040 0.84881 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.54 10.33 59.85 0.62 2.15 16 2 N -1.01 -18.83 3.18 -121.76 -0.39 -19.22 16 3 C 0.14 2.19 5.35 -4.04 -0.02 2.16 16 4 C -0.11 -1.50 5.72 -27.88 -0.16 -1.66 16 5 C -0.03 -0.36 5.17 -104.32 -0.54 -0.90 16 6 C -0.17 -2.12 9.82 -39.44 -0.39 -2.50 16 7 C 0.10 1.18 11.18 -17.55 -0.20 0.98 16 8 N -0.49 -6.38 10.36 -13.25 -0.14 -6.52 16 9 C 0.09 1.04 11.18 -17.55 -0.20 0.84 16 10 C -0.17 -1.88 9.82 -39.45 -0.39 -2.27 16 11 S 2.67 65.50 4.10 -107.50 -0.44 65.06 16 12 O -1.01 -26.48 15.10 -57.17 -0.86 -27.34 16 13 O -1.01 -25.68 15.80 -57.17 -0.90 -26.58 16 14 C -1.02 -28.18 10.29 30.60 0.31 -27.87 16 15 H 0.12 3.38 8.06 -52.49 -0.42 2.96 16 16 C 0.15 4.36 5.47 -17.82 -0.10 4.27 16 17 N -0.82 -23.66 13.96 55.43 0.77 -22.88 16 18 Si 0.80 20.36 26.54 -169.99 -4.51 15.85 16 19 H -0.25 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.25 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.22 -5.68 5.61 56.52 0.32 -5.36 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.07 1.23 7.79 -51.93 -0.40 0.82 16 24 H 0.06 0.75 7.94 -51.93 -0.41 0.33 16 25 H 0.09 1.50 7.61 -51.93 -0.40 1.11 16 26 H 0.07 0.95 7.96 -51.93 -0.41 0.53 16 27 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 28 H 0.09 1.34 8.10 -51.93 -0.42 0.92 16 29 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 297.43 15.07 4.48 4.48 Total: -1.00 -32.96 297.43 -7.26 -40.22 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.22 Total: 1.72 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -1.05 Total: -24.79 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.25 Total: -48.63 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -1.77 Total: -53.92 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.51 Total: 15.85 kcal Atomic # 16 Polarization: 65.50 SS G_CDS: -0.44 Total: 65.06 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.96 -7.26 -40.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509791.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.304 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds