Wall clock time and date at job start Mon Mar 30 2020 02:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00392 * 2 1 4 4 C 1.53003 * 109.47028 * 275.00088 * 3 2 1 5 5 C 1.50703 * 109.46890 * 179.97438 * 4 3 2 6 6 C 1.38654 * 120.78409 * 90.00032 * 5 4 3 7 7 C 1.38209 * 119.15786 * 180.02562 * 6 5 4 8 8 N 1.31870 * 120.76375 * 0.26353 * 7 6 5 9 9 C 1.31872 * 121.72489 * 359.46946 * 8 7 6 10 10 C 1.38200 * 120.76402 * 0.52682 * 9 8 7 11 11 S 1.65599 * 119.99618 * 180.02562 * 2 1 3 12 12 O 1.42105 * 106.40626 * 23.53713 * 11 2 1 13 13 O 1.42098 * 106.40417 * 156.45962 * 11 2 1 14 14 C 1.76209 * 107.21477 * 269.99755 * 11 2 1 15 15 H 1.07996 * 119.99761 * 0.02562 * 14 11 2 16 16 C 1.37874 * 119.99602 * 180.02562 * 14 11 2 17 17 N 1.31520 * 119.99782 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 120.00593 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.47206 * 89.99850 * 18 16 14 20 20 H 1.48501 * 109.47465 * 210.00116 * 18 16 14 21 21 H 1.48503 * 109.47059 * 330.00643 * 18 16 14 22 22 H 1.09000 * 109.47371 * 89.99603 * 1 2 3 23 23 H 1.08995 * 109.47570 * 210.00012 * 1 2 3 24 24 H 1.09004 * 109.46782 * 329.99995 * 1 2 3 25 25 H 1.08996 * 109.47037 * 155.00371 * 3 2 1 26 26 H 1.09002 * 109.46620 * 35.00092 * 3 2 1 27 27 H 1.08996 * 109.46980 * 60.00248 * 4 3 2 28 28 H 1.08997 * 109.47418 * 299.99989 * 4 3 2 29 29 H 1.07995 * 120.42251 * 0.04566 * 6 5 4 30 30 H 1.08002 * 119.61346 * 179.97438 * 7 6 5 31 31 H 1.08004 * 119.61160 * 180.27376 * 9 8 7 32 32 H 1.08003 * 120.41583 * 179.72635 * 10 9 8 33 33 H 0.97006 * 119.99830 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3437 1.7732 -1.4370 5 6 3.0968 3.0786 -1.4369 6 6 4.4792 3.1003 -1.5406 7 6 5.1358 4.3165 -1.5365 8 7 4.4632 5.4458 -1.4306 9 6 3.1480 5.4632 -1.3353 10 6 2.4238 4.2862 -1.3326 11 16 2.2929 -1.4342 -0.0006 12 8 1.4112 -2.4064 -0.5455 13 8 3.5758 -1.1567 -0.5449 14 6 2.5537 -1.8865 1.6823 15 1 2.1866 -1.2518 2.4751 16 6 3.2263 -3.0509 1.9868 17 7 3.4215 -3.3883 3.2429 18 14 3.8607 -4.1492 0.6154 19 1 5.2411 -3.7399 0.2518 20 1 3.8680 -5.5612 1.0753 21 1 2.9773 -4.0196 -0.5712 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 3.1858 1.1175 0.4342 26 1 1.6502 2.0042 0.5895 27 1 1.3555 1.9243 -1.8713 28 1 2.8910 1.0377 -2.0265 29 1 5.0360 2.1786 -1.6237 30 1 6.2125 4.3420 -1.6164 31 1 2.6313 6.4082 -1.2545 32 1 1.3471 4.3069 -1.2499 33 1 3.8944 -4.2077 3.4572 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509791.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:19 Heat of formation + Delta-G solvation = -70.819899 kcal Electronic energy + Delta-G solvation = -18579.668591 eV Core-core repulsion = 15538.243223 eV Total energy + Delta-G solvation = -3041.425368 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.04857 -37.89011 -37.63348 -36.49110 -35.20750 -34.68001 -32.05819 -30.41555 -28.57220 -27.11455 -24.55026 -24.31235 -22.35328 -20.77761 -19.23499 -18.64796 -17.65150 -17.36483 -17.08400 -16.91391 -16.39924 -15.73354 -15.43469 -15.15390 -14.85927 -14.81172 -14.54389 -14.37271 -13.67967 -13.51873 -13.47386 -13.25291 -13.11441 -12.79789 -12.62262 -12.53515 -12.35853 -11.91104 -11.66791 -11.35858 -11.20873 -10.62855 -10.40859 -10.02575 -9.79280 -8.99099 -7.55231 0.06673 0.26425 0.33694 1.02934 1.12098 1.19171 1.86788 2.38702 2.42915 2.91667 3.35040 3.62697 3.69770 3.81763 4.01267 4.06912 4.21804 4.29767 4.29968 4.39301 4.58358 4.74347 4.78533 4.79757 4.97559 4.98435 5.04613 5.14597 5.16673 5.37539 5.52075 5.83349 5.86255 5.98484 6.51432 7.07348 8.18885 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029152 B = 0.005393 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.253952 B = 5190.249685 C = 5568.159556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.002 6.002 3 C 0.130 3.870 4 C -0.101 4.101 5 C -0.041 4.041 6 C -0.183 4.183 7 C 0.090 3.910 8 N -0.516 5.516 9 C 0.090 3.910 10 C -0.164 4.164 11 S 2.694 3.306 12 O -1.026 7.026 13 O -1.022 7.022 14 C -1.042 5.042 15 H 0.103 0.897 16 C 0.107 3.893 17 N -0.855 5.855 18 Si 0.824 3.176 19 H -0.237 1.237 20 H -0.219 1.219 21 H -0.228 1.228 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.133 0.867 30 H 0.171 0.829 31 H 0.183 0.817 32 H 0.165 0.835 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.748 13.784 -8.143 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.840 5.840 3 C 0.004 3.996 4 C -0.140 4.140 5 C -0.050 4.050 6 C -0.203 4.203 7 C -0.066 4.066 8 N -0.225 5.225 9 C -0.067 4.067 10 C -0.183 4.183 11 S 2.794 3.206 12 O -1.016 7.016 13 O -1.012 7.012 14 C -1.174 5.174 15 H 0.121 0.879 16 C -0.109 4.109 17 N -0.485 5.485 18 Si 0.641 3.359 19 H -0.161 1.161 20 H -0.141 1.141 21 H -0.150 1.150 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.121 0.879 25 H 0.082 0.918 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.083 0.917 29 H 0.151 0.849 30 H 0.188 0.812 31 H 0.200 0.800 32 H 0.182 0.818 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.993 13.987 -8.736 16.760 hybrid contribution 0.044 -1.585 0.704 1.735 sum -2.949 12.402 -8.032 15.067 Atomic orbital electron populations 1.21685 0.77032 1.04084 1.02915 1.57100 1.15897 1.20362 1.90688 1.21328 0.96755 0.84922 0.96547 1.21102 1.01602 0.93350 0.97952 1.20324 0.93932 0.95628 0.95142 1.22344 0.95385 1.00367 1.02201 1.23024 1.01333 0.87280 0.94981 1.67703 1.10572 1.31098 1.13165 1.23263 0.89509 0.99436 0.94450 1.22349 1.02938 0.91853 1.01192 1.00756 0.72344 0.71952 0.75552 1.93423 1.67301 1.59998 1.80888 1.93365 1.42277 1.84707 1.80866 1.31132 1.50080 1.17842 1.18391 0.87896 1.25197 0.91273 0.96701 0.97759 1.70021 1.35053 1.24546 1.18909 0.87506 0.83137 0.83404 0.81891 1.16064 1.14131 1.15027 0.91346 0.92325 0.87851 0.91791 0.87460 0.87678 0.91699 0.84860 0.81172 0.80023 0.81790 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.45 10.33 127.77 1.32 3.77 16 2 N -1.00 -36.06 3.18 -539.13 -1.72 -37.78 16 3 C 0.13 3.88 5.35 86.38 0.46 4.34 16 4 C -0.10 -2.58 5.72 29.85 0.17 -2.41 16 5 C -0.04 -0.98 5.17 -19.67 -0.10 -1.08 16 6 C -0.18 -4.60 9.82 22.36 0.22 -4.38 16 7 C 0.09 2.10 11.18 84.68 0.95 3.04 16 8 N -0.52 -12.39 10.36 -195.84 -2.03 -14.42 16 9 C 0.09 1.72 11.18 84.68 0.95 2.67 16 10 C -0.16 -3.01 9.82 22.36 0.22 -2.80 16 11 S 2.69 131.88 4.10 -56.49 -0.23 131.65 16 12 O -1.03 -53.81 15.10 -128.00 -1.93 -55.74 16 13 O -1.02 -52.47 15.80 -128.00 -2.02 -54.49 16 14 C -1.04 -58.83 10.29 67.73 0.70 -58.13 16 15 H 0.10 5.96 8.06 -2.91 -0.02 5.94 16 16 C 0.11 6.19 5.47 84.65 0.46 6.66 16 17 N -0.85 -49.78 13.96 21.45 0.30 -49.48 16 18 Si 0.82 41.03 26.54 68.60 1.82 42.85 16 19 H -0.24 -11.41 7.11 99.48 0.71 -10.71 16 20 H -0.22 -9.61 7.11 99.48 0.71 -8.90 16 21 H -0.23 -11.62 5.61 99.48 0.56 -11.06 16 22 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.06 1.84 7.79 -2.39 -0.02 1.82 16 24 H 0.10 2.04 7.94 -2.39 -0.02 2.03 16 25 H 0.06 2.20 7.61 -2.39 -0.02 2.18 16 26 H 0.11 2.44 7.96 -2.39 -0.02 2.43 16 27 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 28 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 29 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.17 3.16 8.06 -2.91 -0.02 3.13 16 31 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.29 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -71.70 297.43 0.48 -71.22 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.95 Total: 14.51 kcal Atomic # 6 Polarization: -53.66 SS G_CDS: 5.34 Total: -48.32 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -3.45 Total: -101.68 kcal Atomic # 8 Polarization: -106.27 SS G_CDS: -3.95 Total: -110.23 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.82 Total: 42.85 kcal Atomic # 16 Polarization: 131.88 SS G_CDS: -0.23 Total: 131.65 kcal Total: -71.70 0.48 -71.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509791.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.402 kcal (2) G-P(sol) polarization free energy of solvation -71.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds