Wall clock time and date at job start Mon Mar 30 2020 01:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34695 * 126.09680 * 2 1 4 4 C 1.31123 * 108.60585 * 179.82990 * 3 2 1 5 5 S 1.76196 * 125.72484 * 180.18675 * 4 3 2 6 6 C 1.81001 * 99.99896 * 0.29079 * 5 4 3 7 7 C 1.50699 * 109.47086 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00070 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00164 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00248 * 180.02562 * 9 7 6 11 11 C 1.50694 * 109.47064 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00088 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00283 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99594 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00387 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47186 * 59.99941 * 15 13 11 17 17 H 1.48499 * 109.46958 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46761 * 299.99728 * 15 13 11 19 19 O 1.34265 * 108.55150 * 0.43866 * 4 3 2 20 20 C 1.34099 * 126.09209 * 180.31565 * 2 1 3 21 21 C 1.50704 * 126.35585 * 0.02562 * 20 2 1 22 22 H 1.09001 * 109.46953 * 269.68724 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.68322 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.68952 * 1 2 3 25 25 H 1.08999 * 109.47533 * 299.99829 * 6 5 4 26 26 H 1.09000 * 109.47192 * 60.00154 * 6 5 4 27 27 H 0.97003 * 119.99585 * 359.97438 * 9 7 6 28 28 H 1.08999 * 109.46697 * 300.00186 * 10 9 7 29 29 H 1.09000 * 109.46994 * 59.99877 * 10 9 7 30 30 H 0.96998 * 119.99976 * 180.02562 * 14 13 11 31 31 H 1.08999 * 109.47102 * 90.00273 * 21 20 2 32 32 H 1.09003 * 109.46709 * 210.00516 * 21 20 2 33 33 H 1.08996 * 109.46890 * 330.00254 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0884 0.0000 4 6 3.5512 0.6943 0.0037 5 16 4.9623 1.7493 0.0099 6 6 4.1466 3.3651 0.0184 7 6 5.1886 4.4538 0.0253 8 8 6.3667 4.1657 0.0241 9 7 4.8113 5.7477 0.0328 10 6 5.8242 6.8061 0.0389 11 6 5.1451 8.1513 0.0461 12 1 4.0668 8.2119 0.0457 13 6 5.9003 9.3049 0.0522 14 7 7.2134 9.2312 0.0522 15 14 5.0585 10.9724 0.0618 16 1 4.2110 11.0921 1.2753 17 1 6.0852 12.0452 0.0679 18 1 4.2100 11.1055 -1.1497 19 8 3.5761 -0.6481 -0.0036 20 6 2.2970 -1.0836 -0.0060 21 6 1.8425 -2.5205 -0.0144 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3634 0.8928 -0.5089 24 1 -0.3633 -0.8872 -0.5186 25 1 3.5245 3.4628 -0.8713 26 1 3.5239 3.4531 0.9086 27 1 3.8691 5.9782 0.0334 28 1 6.4467 6.7081 0.9283 29 1 6.4467 6.7185 -0.8516 30 1 7.7448 10.0427 0.0568 31 1 1.7334 -2.8609 -1.0441 32 1 2.5813 -3.1382 0.4962 33 1 0.8842 -2.6014 0.4985 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047558600.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:41 Heat of formation + Delta-G solvation = -24.000178 kcal Electronic energy + Delta-G solvation = -17249.068312 eV Core-core repulsion = 14209.673199 eV Total energy + Delta-G solvation = -3039.395113 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.32153 -38.91422 -35.34861 -34.34091 -33.23802 -32.45196 -30.19244 -29.38808 -26.92235 -26.36209 -22.76421 -22.58782 -21.19967 -19.93685 -18.28928 -17.03995 -16.97548 -16.09925 -15.79120 -15.27311 -15.24147 -14.54966 -14.20485 -13.97170 -13.64314 -13.42476 -13.39328 -12.98463 -12.80421 -12.68176 -12.38999 -12.01833 -11.72974 -11.25043 -11.04987 -10.90193 -10.77288 -10.66180 -10.35867 -9.47997 -9.47829 -9.38361 -8.80008 -8.04129 -7.61382 -6.20620 -4.28240 0.69200 1.16553 1.91615 2.37939 2.91976 3.09276 3.23695 3.28602 3.29974 3.88510 4.31836 4.39795 4.54705 4.76692 5.02870 5.05490 5.09904 5.15857 5.21704 5.30520 5.33143 5.42440 5.50848 5.59874 5.84262 6.07758 7.19085 7.25041 7.39005 7.43488 7.57593 7.90358 8.44142 8.65622 8.90371 9.38054 10.89463 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.040811 B = 0.003151 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.922365 B = 8882.860372 C = 9537.730752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.005 4.005 3 N -0.486 5.486 4 C 0.157 3.843 5 S 0.123 5.877 6 C -0.150 4.150 7 C 0.517 3.483 8 O -0.542 6.542 9 N -0.700 5.700 10 C 0.250 3.750 11 C -0.546 4.546 12 H 0.064 0.936 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.905 3.095 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 O -0.182 6.182 20 C -0.059 4.059 21 C -0.064 4.064 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.395 0.605 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.267 0.733 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.325 -20.223 -0.100 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.126 4.126 3 N -0.220 5.220 4 C -0.157 4.157 5 S 0.353 5.647 6 C -0.302 4.302 7 C 0.299 3.701 8 O -0.422 6.422 9 N -0.348 5.348 10 C 0.129 3.871 11 C -0.585 4.585 12 H 0.082 0.918 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.732 3.268 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.200 1.200 19 O -0.071 6.071 20 C -0.115 4.115 21 C -0.121 4.121 22 H 0.093 0.907 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.228 0.772 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.261 -19.892 -0.104 22.859 hybrid contribution -2.018 0.708 0.006 2.138 sum -13.279 -19.184 -0.098 23.332 Atomic orbital electron populations 1.20116 0.86376 1.03366 1.02857 1.21523 0.97869 0.87732 1.05498 1.70956 0.99220 1.31135 1.20708 1.28707 0.99618 0.83213 1.04121 1.86656 0.93695 0.93150 1.91240 1.23879 1.02963 0.94154 1.09197 1.19429 0.88453 0.83793 0.78429 1.90720 1.17892 1.82472 1.51091 1.46386 1.11897 1.05112 1.71423 1.19206 0.86763 0.82988 0.98106 1.21166 0.93366 0.90242 1.53694 0.91812 1.24951 0.94832 0.99587 0.94575 1.69963 1.04384 1.29287 1.48552 0.86447 0.79044 0.82535 0.78737 1.20024 1.21029 1.20018 1.84578 1.29821 1.21795 1.70909 1.23215 0.80698 0.98279 1.09336 1.20238 1.01794 0.86383 1.03638 0.90686 0.90462 0.90757 0.85958 0.85968 0.77220 0.95147 0.95157 0.92290 0.89912 0.90313 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.03 36.01 0.36 -0.19 16 2 C 0.00 -0.06 7.10 -82.79 -0.59 -0.64 16 3 N -0.49 -7.08 10.65 -10.13 -0.11 -7.19 16 4 C 0.16 2.32 8.42 52.46 0.44 2.76 16 5 S 0.12 1.86 21.45 -107.50 -2.31 -0.45 16 6 C -0.15 -2.22 5.67 36.01 0.20 -2.01 16 7 C 0.52 10.03 7.85 -10.98 -0.09 9.95 16 8 O -0.54 -12.60 15.86 5.56 0.09 -12.51 16 9 N -0.70 -14.28 5.55 -61.48 -0.34 -14.62 16 10 C 0.25 6.47 5.43 -5.20 -0.03 6.44 16 11 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 16 12 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 13 C 0.06 1.77 5.46 -17.81 -0.10 1.67 16 14 N -0.88 -25.76 13.29 55.43 0.74 -25.03 16 15 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 O -0.18 -2.56 10.80 3.52 0.04 -2.52 16 20 C -0.06 -0.66 7.38 -35.76 -0.26 -0.92 16 21 C -0.06 -0.40 10.03 36.01 0.36 -0.04 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.40 7.76 -51.93 -0.40 0.00 16 25 H 0.12 1.62 8.14 -51.92 -0.42 1.20 16 26 H 0.12 1.62 8.14 -51.92 -0.42 1.20 16 27 H 0.39 6.83 8.32 -40.82 -0.34 6.49 16 28 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.38 7.77 -51.93 -0.40 -0.03 16 LS Contribution 310.00 15.07 4.67 4.67 Total: -1.00 -32.90 310.00 -6.32 -39.22 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.06 Total: 0.70 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -0.01 Total: 2.12 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.29 Total: -46.84 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.13 Total: -15.04 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.31 Total: -0.45 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.90 -6.32 -39.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047558600.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.219 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds