Wall clock time and date at job start Mon Mar 30 2020 01:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34695 * 126.09680 * 2 1 4 4 C 1.31123 * 108.60585 * 179.82990 * 3 2 1 5 5 S 1.76196 * 125.72484 * 180.18675 * 4 3 2 6 6 C 1.81001 * 99.99896 * 0.29079 * 5 4 3 7 7 C 1.50699 * 109.47086 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00070 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00164 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00248 * 180.02562 * 9 7 6 11 11 C 1.50694 * 109.47064 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00088 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00283 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99594 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00387 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47186 * 59.99941 * 15 13 11 17 17 H 1.48499 * 109.46958 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46761 * 299.99728 * 15 13 11 19 19 O 1.34265 * 108.55150 * 0.43866 * 4 3 2 20 20 C 1.34099 * 126.09209 * 180.31565 * 2 1 3 21 21 C 1.50704 * 126.35585 * 0.02562 * 20 2 1 22 22 H 1.09001 * 109.46953 * 269.68724 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.68322 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.68952 * 1 2 3 25 25 H 1.08999 * 109.47533 * 299.99829 * 6 5 4 26 26 H 1.09000 * 109.47192 * 60.00154 * 6 5 4 27 27 H 0.97003 * 119.99585 * 359.97438 * 9 7 6 28 28 H 1.08999 * 109.46697 * 300.00186 * 10 9 7 29 29 H 1.09000 * 109.46994 * 59.99877 * 10 9 7 30 30 H 0.96998 * 119.99976 * 180.02562 * 14 13 11 31 31 H 1.08999 * 109.47102 * 90.00273 * 21 20 2 32 32 H 1.09003 * 109.46709 * 210.00516 * 21 20 2 33 33 H 1.08996 * 109.46890 * 330.00254 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0884 0.0000 4 6 3.5512 0.6943 0.0037 5 16 4.9623 1.7493 0.0099 6 6 4.1466 3.3651 0.0184 7 6 5.1886 4.4538 0.0253 8 8 6.3667 4.1657 0.0241 9 7 4.8113 5.7477 0.0328 10 6 5.8242 6.8061 0.0389 11 6 5.1451 8.1513 0.0461 12 1 4.0668 8.2119 0.0457 13 6 5.9003 9.3049 0.0522 14 7 7.2134 9.2312 0.0522 15 14 5.0585 10.9724 0.0618 16 1 4.2110 11.0921 1.2753 17 1 6.0852 12.0452 0.0679 18 1 4.2100 11.1055 -1.1497 19 8 3.5761 -0.6481 -0.0036 20 6 2.2970 -1.0836 -0.0060 21 6 1.8425 -2.5205 -0.0144 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3634 0.8928 -0.5089 24 1 -0.3633 -0.8872 -0.5186 25 1 3.5245 3.4628 -0.8713 26 1 3.5239 3.4531 0.9086 27 1 3.8691 5.9782 0.0334 28 1 6.4467 6.7081 0.9283 29 1 6.4467 6.7185 -0.8516 30 1 7.7448 10.0427 0.0568 31 1 1.7334 -2.8609 -1.0441 32 1 2.5813 -3.1382 0.4962 33 1 0.8842 -2.6014 0.4985 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047558600.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:40 Heat of formation + Delta-G solvation = -49.383740 kcal Electronic energy + Delta-G solvation = -17250.169026 eV Core-core repulsion = 14209.673199 eV Total energy + Delta-G solvation = -3040.495827 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.28811 -40.61547 -36.29673 -36.24851 -34.44751 -34.01008 -31.64633 -30.06571 -28.80896 -27.20778 -24.70930 -23.57690 -22.24947 -21.54271 -19.53507 -18.66884 -18.02358 -17.64033 -17.23335 -16.82372 -16.76563 -16.08503 -15.32940 -15.04602 -14.68057 -14.56593 -14.23960 -14.12274 -14.01630 -13.88494 -13.54712 -13.19932 -13.08744 -12.94864 -12.68346 -12.25277 -12.22212 -11.86659 -11.69530 -11.52467 -11.10253 -10.81194 -10.41185 -9.94568 -8.69382 -8.29632 -6.46188 -0.43598 0.20914 0.75198 1.43830 1.44103 1.47370 1.50175 1.55909 2.03976 2.25647 2.46139 3.05600 3.59424 3.70699 3.77884 3.91999 4.10287 4.22295 4.38532 4.65301 4.76961 4.80366 4.83873 5.00981 5.07263 5.07893 5.22110 5.39455 5.40221 5.60463 5.81903 6.42547 6.61739 6.70630 7.17812 7.32246 8.82218 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.040811 B = 0.003151 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.922365 B = 8882.860372 C = 9537.730752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.029 4.029 3 N -0.497 5.497 4 C 0.136 3.864 5 S 0.100 5.900 6 C -0.130 4.130 7 C 0.518 3.482 8 O -0.583 6.583 9 N -0.694 5.694 10 C 0.266 3.734 11 C -0.558 4.558 12 H 0.085 0.915 13 C 0.005 3.995 14 N -0.930 5.930 15 Si 0.984 3.016 16 H -0.262 1.262 17 H -0.286 1.286 18 H -0.262 1.262 19 O -0.198 6.198 20 C -0.053 4.053 21 C -0.064 4.064 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.143 0.857 26 H 0.143 0.857 27 H 0.413 0.587 28 H -0.006 1.006 29 H -0.006 1.006 30 H 0.269 0.731 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.568 -21.048 -0.112 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.150 4.150 3 N -0.232 5.232 4 C -0.178 4.178 5 S 0.329 5.671 6 C -0.281 4.281 7 C 0.303 3.697 8 O -0.465 6.465 9 N -0.344 5.344 10 C 0.143 3.857 11 C -0.596 4.596 12 H 0.103 0.897 13 C -0.195 4.195 14 N -0.568 5.568 15 Si 0.807 3.193 16 H -0.187 1.187 17 H -0.211 1.211 18 H -0.187 1.187 19 O -0.086 6.086 20 C -0.109 4.109 21 C -0.121 4.121 22 H 0.105 0.895 23 H 0.090 0.910 24 H 0.121 0.879 25 H 0.161 0.839 26 H 0.161 0.839 27 H 0.249 0.751 28 H 0.012 0.988 29 H 0.012 0.988 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.553 -20.751 -0.116 25.346 hybrid contribution -1.050 0.786 0.007 1.311 sum -15.603 -19.965 -0.109 25.339 Atomic orbital electron populations 1.20262 0.83591 1.04553 1.03970 1.22232 0.99656 0.87194 1.05929 1.70915 0.99388 1.32591 1.20337 1.28379 0.99348 0.83555 1.06469 1.86698 0.94745 0.93636 1.92012 1.23629 1.01148 0.92145 1.11150 1.20079 0.88833 0.84164 0.76624 1.90704 1.20211 1.83162 1.52449 1.46064 1.11825 1.04701 1.71807 1.18651 0.87335 0.84967 0.94728 1.21579 0.94480 0.90381 1.53151 0.89689 1.26040 0.95382 1.04209 0.93831 1.70124 1.06353 1.30557 1.49787 0.85219 0.77874 0.76724 0.79492 1.18690 1.21146 1.18676 1.84574 1.31590 1.21525 1.70936 1.24242 0.79493 1.00379 1.06828 1.20548 1.03071 0.83171 1.05269 0.89531 0.90997 0.87864 0.83895 0.83898 0.75093 0.98783 0.98795 0.92192 0.88098 0.89663 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.03 71.24 0.71 -0.14 16 2 C -0.03 -0.63 7.10 41.18 0.29 -0.33 16 3 N -0.50 -13.85 10.65 -300.15 -3.20 -17.05 16 4 C 0.14 3.94 8.42 130.35 1.10 5.04 16 5 S 0.10 3.04 21.45 -56.49 -1.21 1.83 16 6 C -0.13 -3.73 5.67 71.24 0.40 -3.33 16 7 C 0.52 20.38 7.85 87.66 0.69 21.07 16 8 O -0.58 -28.16 15.86 -3.03 -0.05 -28.21 16 9 N -0.69 -28.55 5.55 -466.80 -2.59 -31.14 16 10 C 0.27 14.27 5.43 85.63 0.46 14.74 16 11 C -0.56 -29.82 9.28 25.60 0.24 -29.58 16 12 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 13 C 0.01 0.29 5.46 84.65 0.46 0.75 16 14 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 15 Si 0.98 41.86 29.54 68.60 2.03 43.89 16 16 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 17 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 19 O -0.20 -5.40 10.80 -10.33 -0.11 -5.51 16 20 C -0.05 -1.09 7.38 24.74 0.18 -0.90 16 21 C -0.06 -0.58 10.03 71.24 0.71 0.14 16 22 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.10 0.70 7.76 -2.39 -0.02 0.68 16 25 H 0.14 3.57 8.14 -2.40 -0.02 3.55 16 26 H 0.14 3.57 8.14 -2.40 -0.02 3.55 16 27 H 0.41 13.85 8.32 -92.71 -0.77 13.08 16 28 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.12 0.45 7.77 -2.39 -0.02 0.43 16 Total: -1.00 -73.86 310.00 0.78 -73.08 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.36 Total: 10.90 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 5.26 Total: 7.44 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -5.50 Total: -103.42 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.16 Total: -33.72 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.21 Total: 1.83 kcal Total: -73.86 0.78 -73.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047558600.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.696 kcal (2) G-P(sol) polarization free energy of solvation -73.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds