Wall clock time and date at job start Mon Mar 30 2020 00:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48502 * 109.47550 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46870 * 299.99560 * 3 2 1 6 6 H 1.48500 * 109.47251 * 59.99605 * 3 2 1 7 7 C 1.37874 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 N 1.46499 * 109.47547 * 179.72203 * 14 12 11 16 16 C 1.34425 * 126.82430 * 124.99554 * 15 14 12 17 17 N 1.30834 * 108.07551 * 180.02562 * 16 15 14 18 18 C 1.33233 * 109.83052 * 359.97438 * 17 16 15 19 19 N 1.48019 * 125.52935 * 180.02562 * 18 17 16 20 20 O 1.21806 * 120.00064 * 359.97438 * 19 18 17 21 21 O 1.21806 * 120.00391 * 179.97438 * 19 18 17 22 22 N 1.30712 * 108.94893 * 359.71567 * 18 17 16 23 23 H 0.97002 * 119.99980 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 25 25 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 26 26 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 27 27 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 28 28 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 29 29 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 30 30 H 1.08001 * 125.96430 * 0.02863 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5192 -4.9195 0.0012 12 6 2.2503 -6.0453 0.0027 13 8 3.4569 -5.9820 0.0041 14 6 1.5662 -7.3880 -0.0040 15 7 2.5751 -8.4502 -0.0075 16 6 2.6815 -9.4632 0.8696 17 7 3.7104 -10.1936 0.5234 18 6 4.2828 -9.6809 -0.5650 19 7 5.4724 -10.2322 -1.2519 20 8 6.0106 -11.2381 -0.8250 21 8 5.9131 -9.6801 -2.2442 22 7 3.6196 -8.6159 -0.9317 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6240 -2.5566 0.8903 26 1 2.8712 -3.6039 0.8922 27 1 2.8725 -3.6047 -0.8878 28 1 0.9424 -7.4824 0.8849 29 1 0.9444 -7.4746 -0.8950 30 1 2.0312 -9.6430 1.7130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052033180.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:53 Heat of formation + Delta-G solvation = 18.907349 kcal Electronic energy + Delta-G solvation = -19415.561943 eV Core-core repulsion = 15831.734225 eV Total energy + Delta-G solvation = -3583.827717 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.39433 -42.20901 -40.34712 -36.98448 -36.68797 -34.97323 -33.51662 -32.50309 -30.75389 -29.62669 -27.29308 -25.17922 -23.43369 -22.59872 -21.55326 -20.89064 -19.60849 -19.01748 -18.33343 -17.90578 -17.51538 -16.82068 -16.45318 -16.07258 -15.81546 -15.40519 -14.59966 -14.34494 -13.32288 -13.11081 -12.73909 -12.48874 -12.00689 -11.85984 -11.50630 -11.47492 -11.28412 -11.19028 -11.13204 -10.93724 -10.89159 -10.81874 -10.48477 -9.91176 -9.81730 -9.43477 -8.57342 -6.23174 -4.28225 -0.37980 0.13317 0.79103 1.38828 1.97429 1.99707 2.57146 3.19866 3.27875 3.32365 3.39043 3.73126 4.24599 4.27094 4.39712 4.49900 4.64630 5.03242 5.14110 5.59866 5.79511 5.85379 5.87324 6.40564 6.57679 6.62568 7.35014 7.36329 7.43021 7.64142 7.79592 8.07879 8.77254 9.37380 10.88204 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038134 B = 0.003072 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.085212 B = 9112.847072 C = 9644.779426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.349 6.349 12 C 0.441 3.559 13 O -0.490 6.490 14 C 0.131 3.869 15 N -0.344 5.344 16 C 0.292 3.708 17 N -0.494 5.494 18 C 0.269 3.731 19 N 0.063 4.937 20 O -0.098 6.098 21 O -0.108 6.108 22 N -0.188 5.188 23 H 0.264 0.736 24 H 0.030 0.970 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.159 0.841 29 H 0.145 0.855 30 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 -18.971 2.179 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.005 3.995 11 O -0.265 6.265 12 C 0.280 3.720 13 O -0.377 6.377 14 C 0.009 3.991 15 N -0.139 5.139 16 C -0.004 4.004 17 N -0.224 5.224 18 C -0.090 4.090 19 N 0.595 4.405 20 O -0.320 6.320 21 O -0.327 6.327 22 N -0.027 5.027 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.177 0.823 29 H 0.163 0.837 30 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -0.331 -18.326 2.043 18.442 hybrid contribution 0.535 1.013 0.087 1.148 sum 0.204 -17.313 2.130 17.445 Atomic orbital electron populations 1.69968 1.06115 1.27087 1.49562 1.24976 0.94941 0.99482 0.94652 0.86399 0.80075 0.82959 0.77810 1.19542 1.20716 1.20744 1.20984 0.93256 0.89951 1.52554 0.92151 1.19198 0.94126 0.88833 0.99018 1.23821 0.96550 0.77733 1.01401 1.86503 1.42131 1.15541 1.82312 1.22980 0.86875 0.87337 0.74801 1.90776 1.15193 1.87789 1.43953 1.21525 0.86836 0.81064 1.09707 1.50344 1.22005 1.21810 1.19743 1.26445 0.94696 0.83732 0.95545 1.70015 1.09125 1.30683 1.12600 1.24014 0.94732 0.94515 0.95783 1.41717 0.98697 1.00190 0.99939 1.94631 1.56974 1.12026 1.68402 1.94681 1.63950 1.61323 1.12767 1.78403 0.98681 1.13892 1.11685 0.92629 0.95182 0.95240 0.91977 0.91845 0.82311 0.83716 0.73427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.23 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.62 5.35 -27.89 -0.15 0.47 16 10 C 0.08 1.55 5.40 37.15 0.20 1.75 16 11 O -0.35 -5.68 10.22 -39.26 -0.40 -6.08 16 12 C 0.44 5.99 8.00 36.00 0.29 6.28 16 13 O -0.49 -8.75 15.50 -18.76 -0.29 -9.04 16 14 C 0.13 0.88 7.14 -5.20 -0.04 0.85 16 15 N -0.34 -3.19 3.40 -63.81 -0.22 -3.40 16 16 C 0.29 2.00 12.63 -90.66 -1.14 0.86 16 17 N -0.49 -5.63 11.15 -12.81 -0.14 -5.77 16 18 C 0.27 3.73 9.01 -308.65 -2.78 0.95 16 19 N 0.06 0.92 4.45 31.81 0.14 1.06 16 20 O -0.10 -1.38 19.23 -29.46 -0.57 -1.95 16 21 O -0.11 -1.64 19.22 -29.46 -0.57 -2.20 16 22 N -0.19 -2.61 11.79 31.75 0.37 -2.23 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 27 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 28 H 0.16 0.23 8.09 -51.93 -0.42 -0.19 16 29 H 0.15 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.25 0.05 8.06 -52.49 -0.42 -0.38 16 LS Contribution 294.12 15.07 4.43 4.43 Total: -1.00 -35.64 294.12 -8.05 -43.70 By element: Atomic # 1 Polarization: -5.38 SS G_CDS: -2.50 Total: -7.88 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -4.03 Total: -1.80 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.89 Total: -34.90 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -1.82 Total: -19.28 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -35.64 -8.05 -43.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052033180.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.602 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds