Wall clock time and date at job start Mon Mar 30 2020 00:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48502 * 109.47550 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46870 * 299.99560 * 3 2 1 6 6 H 1.48500 * 109.47251 * 59.99605 * 3 2 1 7 7 C 1.37874 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 N 1.46499 * 109.47547 * 179.72203 * 14 12 11 16 16 C 1.34425 * 126.82430 * 124.99554 * 15 14 12 17 17 N 1.30834 * 108.07551 * 180.02562 * 16 15 14 18 18 C 1.33233 * 109.83052 * 359.97438 * 17 16 15 19 19 N 1.48019 * 125.52935 * 180.02562 * 18 17 16 20 20 O 1.21806 * 120.00064 * 359.97438 * 19 18 17 21 21 O 1.21806 * 120.00391 * 179.97438 * 19 18 17 22 22 N 1.30712 * 108.94893 * 359.71567 * 18 17 16 23 23 H 0.97002 * 119.99980 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 25 25 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 26 26 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 27 27 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 28 28 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 29 29 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 30 30 H 1.08001 * 125.96430 * 0.02863 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5192 -4.9195 0.0012 12 6 2.2503 -6.0453 0.0027 13 8 3.4569 -5.9820 0.0041 14 6 1.5662 -7.3880 -0.0040 15 7 2.5751 -8.4502 -0.0075 16 6 2.6815 -9.4632 0.8696 17 7 3.7104 -10.1936 0.5234 18 6 4.2828 -9.6809 -0.5650 19 7 5.4724 -10.2322 -1.2519 20 8 6.0106 -11.2381 -0.8250 21 8 5.9131 -9.6801 -2.2442 22 7 3.6196 -8.6159 -0.9317 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6240 -2.5566 0.8903 26 1 2.8712 -3.6039 0.8922 27 1 2.8725 -3.6047 -0.8878 28 1 0.9424 -7.4824 0.8849 29 1 0.9444 -7.4746 -0.8950 30 1 2.0312 -9.6430 1.7130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052033180.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:52 Heat of formation + Delta-G solvation = -2.237064 kcal Electronic energy + Delta-G solvation = -19416.478833 eV Core-core repulsion = 15831.734225 eV Total energy + Delta-G solvation = -3584.744608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.084 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.21586 -43.23139 -41.56337 -38.07711 -37.98936 -35.78932 -35.48798 -33.31345 -32.49067 -30.63301 -28.33682 -26.94540 -24.29824 -23.54511 -23.09212 -22.18207 -20.51263 -20.08784 -19.39040 -19.11812 -18.39376 -18.33525 -17.86336 -17.26193 -16.70155 -16.43030 -16.21588 -15.48959 -14.49276 -14.41864 -14.33616 -13.57890 -13.17050 -13.12240 -13.08855 -12.92350 -12.66535 -12.64255 -12.63209 -12.17590 -11.95721 -11.79003 -11.70140 -11.57307 -11.51282 -11.30808 -10.64196 -8.30723 -6.43013 -1.42531 -0.77914 0.03912 0.70441 0.94659 1.15302 1.38908 1.39835 1.51550 1.59800 2.36463 2.68636 3.04494 3.22430 3.40855 3.78613 3.85682 4.02397 4.16144 4.18390 4.33334 4.64726 4.77069 5.12159 5.20610 5.44714 5.45332 5.70453 5.78454 6.03616 6.36961 6.49901 6.70747 7.27108 8.81592 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038134 B = 0.003072 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.085212 B = 9112.847072 C = 9644.779426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.552 4.552 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.094 3.906 11 O -0.350 6.350 12 C 0.437 3.563 13 O -0.537 6.537 14 C 0.142 3.858 15 N -0.344 5.344 16 C 0.324 3.676 17 N -0.523 5.523 18 C 0.257 3.743 19 N 0.060 4.940 20 O -0.091 6.091 21 O -0.146 6.146 22 N -0.233 5.233 23 H 0.268 0.732 24 H 0.010 0.990 25 H 0.014 0.986 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.229 0.771 29 H 0.176 0.824 30 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 -19.692 3.678 20.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.590 4.590 8 H 0.078 0.922 9 C -0.005 4.005 10 C 0.021 3.979 11 O -0.266 6.266 12 C 0.279 3.721 13 O -0.427 6.427 14 C 0.022 3.978 15 N -0.139 5.139 16 C 0.031 3.969 17 N -0.254 5.254 18 C -0.103 4.103 19 N 0.589 4.411 20 O -0.317 6.317 21 O -0.357 6.357 22 N -0.074 5.074 23 H 0.077 0.923 24 H 0.028 0.972 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.245 0.755 29 H 0.193 0.807 30 H 0.334 0.666 Dipole moment (debyes) X Y Z Total from point charges -1.693 -19.027 3.489 19.419 hybrid contribution 0.859 1.143 -0.284 1.457 sum -0.835 -17.885 3.205 18.189 Atomic orbital electron populations 1.70064 1.07570 1.28241 1.50323 1.25860 0.95814 1.03109 0.94112 0.85356 0.78835 0.78524 0.78090 1.19032 1.20135 1.19921 1.21395 0.93578 0.91513 1.52537 0.92174 1.18976 0.94265 0.90114 0.97185 1.23164 0.95042 0.78840 1.00840 1.86470 1.41867 1.15326 1.82887 1.24340 0.86621 0.88492 0.72601 1.90778 1.17505 1.88349 1.46027 1.22128 0.85436 0.75781 1.14471 1.50534 1.21340 1.22794 1.19247 1.27853 0.93023 0.81089 0.94946 1.70016 1.10815 1.32289 1.12302 1.23872 0.94507 0.95126 0.96775 1.41900 0.99262 1.00088 0.99897 1.94588 1.57229 1.11944 1.67977 1.94671 1.65211 1.61898 1.13898 1.78289 1.00560 1.14332 1.14181 0.92260 0.97165 0.96721 0.92141 0.92809 0.75468 0.80668 0.66626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.82 13.29 21.45 0.28 -52.54 16 2 C 0.01 0.58 5.46 84.65 0.46 1.04 16 3 Si 0.97 42.40 29.54 68.60 2.03 44.42 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -30.03 9.11 25.60 0.23 -29.79 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 9 C 0.03 1.57 5.35 29.85 0.16 1.73 16 10 C 0.09 3.81 5.40 71.98 0.39 4.20 16 11 O -0.35 -10.89 10.22 -51.41 -0.53 -11.41 16 12 C 0.44 10.92 8.00 71.23 0.57 11.49 16 13 O -0.54 -18.86 15.50 21.94 0.34 -18.52 16 14 C 0.14 1.22 7.14 85.63 0.61 1.83 16 15 N -0.34 -5.10 3.40 -355.81 -1.21 -6.31 16 16 C 0.32 2.89 12.63 180.36 2.28 5.17 16 17 N -0.52 -10.64 11.15 -194.45 -2.17 -12.81 16 18 C 0.26 6.98 9.01 256.54 2.31 9.29 16 19 N 0.06 1.82 4.45 -53.27 -0.24 1.58 16 20 O -0.09 -2.61 19.23 18.88 0.36 -2.25 16 21 O -0.15 -4.71 19.22 18.88 0.36 -4.35 16 22 N -0.23 -6.27 11.79 -53.47 -0.63 -6.90 16 23 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 2.44 8.13 -2.39 -0.02 2.42 16 27 H 0.05 2.25 8.13 -2.38 -0.02 2.23 16 28 H 0.23 -1.12 8.09 -2.38 -0.02 -1.14 16 29 H 0.18 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.32 -2.38 8.06 -2.91 -0.02 -2.40 16 Total: -1.00 -83.86 294.12 6.81 -77.06 By element: Atomic # 1 Polarization: -14.12 SS G_CDS: 1.19 Total: -12.93 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 7.01 Total: 4.96 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -3.96 Total: -76.97 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: 0.54 Total: -36.53 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -83.86 6.81 -77.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052033180.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.818 kcal (2) G-P(sol) polarization free energy of solvation -83.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds