Wall clock time and date at job start Mon Mar 30 2020 01:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47449 * 2 1 4 4 H 1.08999 * 109.47383 * 303.87181 * 3 2 1 5 5 C 1.50701 * 109.47289 * 183.86762 * 3 2 1 6 6 H 1.07997 * 119.99947 * 245.38607 * 5 3 2 7 7 C 1.37875 * 119.99710 * 65.38808 * 5 3 2 8 8 N 1.31512 * 120.00021 * 193.68904 * 7 5 3 9 9 Si 1.86802 * 120.00067 * 13.69105 * 7 5 3 10 10 H 1.48503 * 109.47219 * 84.69757 * 9 7 5 11 11 H 1.48505 * 109.47153 * 204.69696 * 9 7 5 12 12 H 1.48497 * 109.47130 * 324.69765 * 9 7 5 13 13 N 1.46507 * 109.46767 * 63.86930 * 3 2 1 14 14 S 1.65598 * 119.99747 * 215.39480 * 13 3 2 15 15 O 1.42103 * 106.39640 * 178.62256 * 14 13 3 16 16 O 1.42095 * 106.40593 * 311.53889 * 14 13 3 17 17 C 1.76193 * 107.21727 * 65.08655 * 14 13 3 18 18 C 1.38680 * 120.41890 * 273.94532 * 17 14 13 19 19 C 1.38624 * 118.42143 * 179.78481 * 18 17 14 20 20 C 1.38225 * 119.16112 * 0.51239 * 19 18 17 21 21 N 1.31858 * 120.76677 * 359.72747 * 20 19 18 22 22 C 1.31884 * 121.72157 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47202 * 54.94564 * 1 2 3 24 24 H 1.09001 * 109.46737 * 294.94780 * 1 2 3 25 25 H 1.08991 * 109.47457 * 174.94596 * 1 2 3 26 26 H 1.08994 * 109.47315 * 120.00458 * 2 1 3 27 27 H 1.09008 * 109.47121 * 240.00354 * 2 1 3 28 28 H 0.97004 * 120.00124 * 180.02562 * 8 7 5 29 29 H 0.96997 * 119.99522 * 35.40376 * 13 3 2 30 30 H 1.07998 * 120.78319 * 0.02562 * 18 17 14 31 31 H 1.08001 * 120.42095 * 180.22261 * 19 18 17 32 32 H 1.08001 * 119.62185 * 179.74634 * 20 19 18 33 33 H 1.08002 * 119.61897 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6212 1.9760 -0.8532 5 6 3.5440 1.4435 -0.0958 6 1 4.1373 1.8142 0.7270 7 6 4.1625 0.9712 -1.2340 8 7 5.4530 0.7182 -1.2242 9 14 3.1675 0.6908 -2.7899 10 1 3.0568 1.9658 -3.5432 11 1 3.8449 -0.3258 -3.6342 12 1 1.8098 0.2096 -2.4291 13 7 1.6293 2.1056 1.2401 14 16 1.2233 3.7110 1.2253 15 8 0.8455 4.0415 2.5547 16 8 2.2612 4.3809 0.5230 17 6 -0.2288 3.8726 0.2406 18 6 -0.1316 4.0178 -1.1352 19 6 -1.3009 4.1371 -1.8703 20 6 -2.5157 4.1183 -1.2111 21 7 -2.5700 3.9836 0.0994 22 6 -1.4786 3.8627 0.8299 23 1 -0.3633 0.5902 -0.8412 24 1 -0.3633 0.4335 0.9318 25 1 -0.3634 -1.0236 -0.0905 26 1 1.8933 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8901 28 1 5.8883 0.3862 -2.0251 29 1 1.5953 1.6043 2.0698 30 1 0.8320 4.0336 -1.6227 31 1 -1.2629 4.2480 -2.9439 32 1 -3.4311 4.2148 -1.7760 33 1 -1.5626 3.7538 1.9011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178856.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:19 Heat of formation + Delta-G solvation = -36.961316 kcal Electronic energy + Delta-G solvation = -19359.578087 eV Core-core repulsion = 16319.620937 eV Total energy + Delta-G solvation = -3039.957150 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.11348 -36.86311 -36.26786 -35.35891 -32.68739 -32.25853 -31.51747 -31.10670 -27.27676 -24.03658 -23.75716 -22.82769 -20.58606 -19.28402 -17.84357 -17.38142 -16.80954 -16.56380 -16.29443 -15.42352 -14.74852 -14.42614 -14.06697 -13.97043 -13.56168 -13.25303 -12.86502 -12.66174 -12.32668 -12.06181 -11.69652 -11.63430 -11.49624 -11.09028 -11.02427 -10.92309 -10.74795 -10.30099 -10.10621 -9.90629 -9.63134 -9.53626 -9.43883 -8.67016 -8.37421 -6.18960 -4.15648 0.51254 0.90536 1.10136 3.16488 3.21887 3.28050 3.39098 3.68165 4.14500 4.28194 4.29350 4.52055 4.71371 4.84453 5.05410 5.12988 5.30847 5.52938 5.70858 5.74966 5.81579 5.86675 5.90368 6.09381 6.36645 6.43893 6.44282 6.59887 6.94558 7.12773 7.49781 7.66597 7.73258 8.40407 8.92642 9.42686 10.94368 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.008524 C = 0.007499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.748334 B = 3284.195606 C = 3733.070665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.135 4.135 3 C 0.258 3.742 4 H 0.028 0.972 5 C -0.529 4.529 6 H 0.084 0.916 7 C 0.080 3.920 8 N -0.885 5.885 9 Si 0.848 3.152 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.249 1.249 13 N -1.092 6.092 14 S 2.694 3.306 15 O -0.976 6.976 16 O -0.937 6.937 17 C -0.727 4.727 18 C 0.027 3.973 19 C -0.195 4.195 20 C 0.142 3.858 21 N -0.500 5.500 22 C 0.196 3.804 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.266 0.734 29 H 0.412 0.588 30 H 0.154 0.846 31 H 0.143 0.857 32 H 0.161 0.839 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.167 2.820 -0.691 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.174 4.174 3 C 0.153 3.847 4 H 0.046 0.954 5 C -0.568 4.568 6 H 0.102 0.898 7 C -0.123 4.123 8 N -0.522 5.522 9 Si 0.674 3.326 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.173 1.173 13 N -0.852 5.852 14 S 2.779 3.221 15 O -0.966 6.966 16 O -0.927 6.927 17 C -0.812 4.812 18 C 0.000 4.000 19 C -0.216 4.216 20 C -0.014 4.014 21 N -0.210 5.210 22 C 0.037 3.963 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.246 0.754 30 H 0.171 0.829 31 H 0.161 0.839 32 H 0.178 0.822 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -14.406 3.529 -0.187 14.833 hybrid contribution -0.149 -0.653 -1.633 1.766 sum -14.555 2.876 -1.820 14.947 Atomic orbital electron populations 1.21858 0.98069 1.00326 1.00742 1.22298 0.93095 0.99203 1.02834 1.18805 0.95985 0.89549 0.80408 0.95399 1.21269 0.88809 1.42771 1.03971 0.89831 1.24854 0.94749 0.94348 0.98382 1.69928 1.09960 1.43415 1.28875 0.87511 0.81866 0.78744 0.84496 1.19947 1.20996 1.17312 1.55261 1.82267 1.29703 1.18012 1.02011 0.73495 0.73516 0.73079 1.93536 1.84403 1.83209 1.35428 1.93637 1.51874 1.72541 1.74611 1.32387 1.21331 1.17799 1.09708 1.21520 1.00395 0.86211 0.91834 1.22266 0.93615 1.03788 1.01923 1.23079 0.97823 0.89884 0.90628 1.67827 1.32129 1.13564 1.07441 1.22587 0.86121 0.87184 1.00359 0.93967 0.93260 0.93743 0.91584 0.90959 0.92433 0.75419 0.82852 0.83869 0.82210 0.81110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.73 37.16 0.36 -2.02 16 2 C -0.13 -2.54 4.89 -26.73 -0.13 -2.67 16 3 C 0.26 5.42 1.74 -69.08 -0.12 5.30 16 4 H 0.03 0.58 5.66 -51.93 -0.29 0.29 16 5 C -0.53 -13.94 9.28 -34.44 -0.32 -14.26 16 6 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 7 C 0.08 2.19 5.36 -17.82 -0.10 2.09 16 8 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 9 Si 0.85 19.34 25.87 -169.99 -4.40 14.94 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.25 -5.09 5.33 56.52 0.30 -4.79 16 13 N -1.09 -19.78 4.95 -5.88 -0.03 -19.81 16 14 S 2.69 48.37 5.66 -107.50 -0.61 47.76 16 15 O -0.98 -18.02 17.21 -57.17 -0.98 -19.01 16 16 O -0.94 -20.41 17.22 -57.17 -0.98 -21.40 16 17 C -0.73 -11.27 5.86 -39.44 -0.23 -11.50 16 18 C 0.03 0.40 8.86 -39.28 -0.35 0.05 16 19 C -0.20 -2.31 10.11 -39.44 -0.40 -2.70 16 20 C 0.14 1.63 11.18 -17.55 -0.20 1.43 16 21 N -0.50 -6.88 10.36 -13.25 -0.14 -7.01 16 22 C 0.20 2.80 10.69 -17.55 -0.19 2.62 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.70 7.86 -51.93 -0.41 0.29 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.07 1.45 4.70 -51.92 -0.24 1.21 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.41 6.45 8.84 -34.47 -0.30 6.15 16 30 H 0.15 2.28 7.65 -52.49 -0.40 1.88 16 31 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.17 2.15 7.54 -52.49 -0.40 1.75 16 LS Contribution 291.64 15.07 4.40 4.40 Total: -1.00 -32.82 291.64 -7.46 -40.28 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -3.82 Total: 6.65 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -1.67 Total: -21.67 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.61 Total: -51.95 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -1.97 Total: -40.40 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.40 Total: 14.94 kcal Atomic # 16 Polarization: 48.37 SS G_CDS: -0.61 Total: 47.76 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.82 -7.46 -40.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178856.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.322 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds