Wall clock time and date at job start Mon Mar 30 2020 01:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47449 * 2 1 4 4 H 1.08999 * 109.47383 * 303.87181 * 3 2 1 5 5 C 1.50701 * 109.47289 * 183.86762 * 3 2 1 6 6 H 1.07997 * 119.99947 * 245.38607 * 5 3 2 7 7 C 1.37875 * 119.99710 * 65.38808 * 5 3 2 8 8 N 1.31512 * 120.00021 * 193.68904 * 7 5 3 9 9 Si 1.86802 * 120.00067 * 13.69105 * 7 5 3 10 10 H 1.48503 * 109.47219 * 84.69757 * 9 7 5 11 11 H 1.48505 * 109.47153 * 204.69696 * 9 7 5 12 12 H 1.48497 * 109.47130 * 324.69765 * 9 7 5 13 13 N 1.46507 * 109.46767 * 63.86930 * 3 2 1 14 14 S 1.65598 * 119.99747 * 215.39480 * 13 3 2 15 15 O 1.42103 * 106.39640 * 178.62256 * 14 13 3 16 16 O 1.42095 * 106.40593 * 311.53889 * 14 13 3 17 17 C 1.76193 * 107.21727 * 65.08655 * 14 13 3 18 18 C 1.38680 * 120.41890 * 273.94532 * 17 14 13 19 19 C 1.38624 * 118.42143 * 179.78481 * 18 17 14 20 20 C 1.38225 * 119.16112 * 0.51239 * 19 18 17 21 21 N 1.31858 * 120.76677 * 359.72747 * 20 19 18 22 22 C 1.31884 * 121.72157 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47202 * 54.94564 * 1 2 3 24 24 H 1.09001 * 109.46737 * 294.94780 * 1 2 3 25 25 H 1.08991 * 109.47457 * 174.94596 * 1 2 3 26 26 H 1.08994 * 109.47315 * 120.00458 * 2 1 3 27 27 H 1.09008 * 109.47121 * 240.00354 * 2 1 3 28 28 H 0.97004 * 120.00124 * 180.02562 * 8 7 5 29 29 H 0.96997 * 119.99522 * 35.40376 * 13 3 2 30 30 H 1.07998 * 120.78319 * 0.02562 * 18 17 14 31 31 H 1.08001 * 120.42095 * 180.22261 * 19 18 17 32 32 H 1.08001 * 119.62185 * 179.74634 * 20 19 18 33 33 H 1.08002 * 119.61897 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6212 1.9760 -0.8532 5 6 3.5440 1.4435 -0.0958 6 1 4.1373 1.8142 0.7270 7 6 4.1625 0.9712 -1.2340 8 7 5.4530 0.7182 -1.2242 9 14 3.1675 0.6908 -2.7899 10 1 3.0568 1.9658 -3.5432 11 1 3.8449 -0.3258 -3.6342 12 1 1.8098 0.2096 -2.4291 13 7 1.6293 2.1056 1.2401 14 16 1.2233 3.7110 1.2253 15 8 0.8455 4.0415 2.5547 16 8 2.2612 4.3809 0.5230 17 6 -0.2288 3.8726 0.2406 18 6 -0.1316 4.0178 -1.1352 19 6 -1.3009 4.1371 -1.8703 20 6 -2.5157 4.1183 -1.2111 21 7 -2.5700 3.9836 0.0994 22 6 -1.4786 3.8627 0.8299 23 1 -0.3633 0.5902 -0.8412 24 1 -0.3633 0.4335 0.9318 25 1 -0.3634 -1.0236 -0.0905 26 1 1.8933 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8901 28 1 5.8883 0.3862 -2.0251 29 1 1.5953 1.6043 2.0698 30 1 0.8320 4.0336 -1.6227 31 1 -1.2629 4.2480 -2.9439 32 1 -3.4311 4.2148 -1.7760 33 1 -1.5626 3.7538 1.9011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178856.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:18 Heat of formation + Delta-G solvation = -63.437121 kcal Electronic energy + Delta-G solvation = -19360.726164 eV Core-core repulsion = 16319.620937 eV Total energy + Delta-G solvation = -3041.105227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12024 -38.40522 -37.85950 -36.90932 -34.28128 -33.72342 -32.53913 -32.50739 -29.06768 -25.08491 -24.79582 -24.51440 -22.15775 -20.68863 -19.12479 -19.09871 -18.28943 -17.74800 -17.53644 -17.01256 -16.35823 -15.57276 -15.37550 -15.18736 -15.01093 -14.57106 -14.32903 -14.06462 -13.70469 -13.58174 -13.20615 -13.17647 -13.07504 -12.71347 -12.60283 -12.35678 -12.20246 -11.77548 -11.67134 -11.32430 -11.13970 -10.67957 -10.61920 -10.50509 -10.08338 -8.27317 -6.28863 -0.65958 -0.38631 0.08331 1.36288 1.39458 1.46856 2.10261 2.36585 2.52068 2.79506 3.05702 3.29637 3.37451 3.76707 3.81957 4.05222 4.25378 4.27812 4.35631 4.46676 4.61101 4.64533 4.77520 4.93706 4.95241 5.13086 5.21234 5.43997 5.49155 5.54842 5.65485 6.24157 6.41117 6.68715 6.75539 7.33649 8.90132 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.008524 C = 0.007499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.748334 B = 3284.195606 C = 3733.070665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.262 3.738 4 H 0.039 0.961 5 C -0.536 4.536 6 H 0.033 0.967 7 C 0.018 3.982 8 N -0.942 5.942 9 Si 0.908 3.092 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.205 1.205 13 N -1.092 6.092 14 S 2.705 3.295 15 O -0.986 6.986 16 O -0.986 6.986 17 C -0.731 4.731 18 C 0.004 3.996 19 C -0.184 4.184 20 C 0.151 3.849 21 N -0.511 5.511 22 C 0.193 3.807 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.265 0.735 29 H 0.421 0.579 30 H 0.144 0.856 31 H 0.180 0.820 32 H 0.205 0.795 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.264 2.499 -2.360 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.155 3.845 4 H 0.057 0.943 5 C -0.575 4.575 6 H 0.051 0.949 7 C -0.181 4.181 8 N -0.581 5.581 9 Si 0.730 3.270 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.127 1.127 13 N -0.853 5.853 14 S 2.795 3.205 15 O -0.976 6.976 16 O -0.976 6.976 17 C -0.821 4.821 18 C -0.023 4.023 19 C -0.204 4.204 20 C -0.005 4.005 21 N -0.221 5.221 22 C 0.034 3.966 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.257 0.743 30 H 0.162 0.838 31 H 0.197 0.803 32 H 0.222 0.778 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -18.489 3.202 -1.792 18.850 hybrid contribution 1.084 -0.463 -1.056 1.583 sum -17.405 2.739 -2.849 17.848 Atomic orbital electron populations 1.21803 0.94828 1.02006 1.01785 1.22174 0.95911 0.96800 1.02414 1.18645 0.92430 0.91605 0.81811 0.94290 1.21603 0.91843 1.41587 1.02486 0.94852 1.25794 0.95813 0.94231 1.02233 1.70101 1.12404 1.45715 1.29919 0.86530 0.82305 0.78833 0.79342 1.19436 1.21268 1.12726 1.55077 1.82747 1.29642 1.17810 1.01230 0.73655 0.72810 0.72770 1.93510 1.84642 1.83196 1.36279 1.93579 1.54942 1.73591 1.75486 1.31732 1.19850 1.20714 1.09853 1.21664 1.01466 0.87484 0.91711 1.22660 0.92340 1.01776 1.03589 1.23858 0.99433 0.87226 0.89970 1.67934 1.31444 1.13970 1.08718 1.22770 0.85755 0.86931 1.01095 0.93455 0.91916 0.91608 0.91649 0.91955 0.92553 0.74333 0.83819 0.80273 0.77834 0.80173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.73 71.98 0.70 -3.31 16 2 C -0.13 -4.77 4.89 30.59 0.15 -4.62 16 3 C 0.26 10.88 1.74 44.24 0.08 10.95 16 4 H 0.04 1.56 5.66 -2.39 -0.01 1.55 16 5 C -0.54 -29.31 9.28 25.60 0.24 -29.08 16 6 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 7 C 0.02 0.99 5.36 84.65 0.45 1.44 16 8 N -0.94 -57.69 13.96 21.45 0.30 -57.39 16 9 Si 0.91 39.46 25.87 68.60 1.77 41.23 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.21 -7.43 5.33 99.48 0.53 -6.90 16 13 N -1.09 -39.67 4.95 -172.51 -0.85 -40.53 16 14 S 2.71 97.93 5.66 -56.49 -0.32 97.61 16 15 O -0.99 -36.55 17.21 -128.00 -2.20 -38.75 16 16 O -0.99 -44.62 17.22 -128.00 -2.20 -46.82 16 17 C -0.73 -21.45 5.86 22.36 0.13 -21.31 16 18 C 0.00 0.09 8.86 22.47 0.20 0.29 16 19 C -0.18 -3.48 10.11 22.36 0.23 -3.25 16 20 C 0.15 2.68 11.18 84.69 0.95 3.63 16 21 N -0.51 -12.05 10.36 -195.84 -2.03 -14.07 16 22 C 0.19 5.02 10.69 84.67 0.91 5.93 16 23 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.54 7.86 -2.39 -0.02 1.52 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.06 2.34 4.70 -2.38 -0.01 2.33 16 28 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.42 13.24 8.84 -96.75 -0.86 12.39 16 30 H 0.14 4.11 7.65 -2.91 -0.02 4.08 16 31 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.21 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.18 4.17 7.54 -2.91 -0.02 4.15 16 Total: -1.00 -74.72 291.64 -1.41 -76.13 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.10 Total: 21.92 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 4.03 Total: -39.32 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -2.58 Total: -111.99 kcal Atomic # 8 Polarization: -81.17 SS G_CDS: -4.41 Total: -85.58 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.77 Total: 41.23 kcal Atomic # 16 Polarization: 97.93 SS G_CDS: -0.32 Total: 97.61 kcal Total: -74.72 -1.41 -76.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178856.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.690 kcal (2) G-P(sol) polarization free energy of solvation -74.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds