Wall clock time and date at job start Mon Mar 30 2020 01:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47249 * 2 1 4 4 H 1.08991 * 109.47510 * 185.54534 * 3 2 1 5 5 C 1.50706 * 109.46739 * 305.54432 * 3 2 1 6 6 H 1.08003 * 119.99868 * 116.62881 * 5 3 2 7 7 C 1.37872 * 119.99899 * 296.62584 * 5 3 2 8 8 N 1.31522 * 120.00159 * 352.49746 * 7 5 3 9 9 Si 1.86800 * 120.00022 * 172.50083 * 7 5 3 10 10 H 1.48500 * 109.47220 * 269.99785 * 9 7 5 11 11 H 1.48500 * 109.47225 * 30.00181 * 9 7 5 12 12 H 1.48502 * 109.47286 * 149.99808 * 9 7 5 13 13 N 1.46902 * 109.47053 * 65.53872 * 3 2 1 14 14 C 1.46901 * 110.99555 * 87.04866 * 13 3 2 15 15 C 1.50704 * 109.46759 * 184.51735 * 14 13 3 16 16 C 1.33393 * 122.53977 * 269.71048 * 15 14 13 17 17 S 1.75880 * 109.59306 * 179.87178 * 16 15 14 18 18 C 1.75884 * 90.97115 * 0.33038 * 17 16 15 19 19 N 1.48036 * 125.20376 * 179.83364 * 18 17 16 20 20 O 1.21803 * 120.00040 * 179.97438 * 19 18 17 21 21 O 1.21796 * 119.99976 * 359.97438 * 19 18 17 22 22 C 1.33389 * 109.59230 * 359.81342 * 18 17 16 23 23 H 1.08998 * 109.47431 * 303.33000 * 1 2 3 24 24 H 1.08999 * 109.46995 * 63.33313 * 1 2 3 25 25 H 1.09007 * 109.47015 * 183.32903 * 1 2 3 26 26 H 1.09004 * 109.47335 * 239.99571 * 2 1 3 27 27 H 1.08999 * 109.46758 * 119.99756 * 2 1 3 28 28 H 0.96994 * 119.99739 * 355.70129 * 8 7 5 29 29 H 1.00899 * 111.00231 * 323.09550 * 13 3 2 30 30 H 1.08995 * 109.47274 * 304.51201 * 14 13 3 31 31 H 1.08996 * 109.47065 * 64.51795 * 14 13 3 32 32 H 1.08004 * 125.20045 * 359.97438 * 16 15 14 33 33 H 1.07997 * 122.53934 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1254 1.4441 -0.0993 5 6 1.4287 2.1914 -1.1561 6 1 0.7765 3.0321 -0.9706 7 6 1.7019 1.8033 -2.4506 8 7 2.6076 0.8782 -2.6825 9 14 0.7859 2.5914 -3.8751 10 1 -0.4442 1.8115 -4.1646 11 1 0.4161 3.9840 -3.5159 12 1 1.6576 2.6052 -5.0772 13 7 1.6625 2.0953 1.2607 14 6 2.6713 1.8541 2.3010 15 6 2.1985 2.4427 3.6052 16 6 2.4775 3.6950 3.9703 17 16 1.7599 4.0249 5.5418 18 6 1.1104 2.3924 5.6214 19 7 0.3122 1.8451 6.7416 20 8 -0.0920 0.6970 6.6975 21 8 0.0597 2.5430 7.7074 22 6 1.4467 1.7229 4.5178 23 1 -0.3634 0.5646 0.8586 24 1 -0.3633 0.4612 -0.9184 25 1 -0.3633 -1.0260 0.0597 26 1 1.8934 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 3.1273 0.5137 -1.9491 29 1 0.7495 1.7928 1.5654 30 1 2.8213 0.7811 2.4198 31 1 3.6117 2.3225 2.0107 32 1 3.0543 4.3991 3.3890 33 1 1.1549 0.6968 4.3492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183899.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:14 Heat of formation + Delta-G solvation = 26.484778 kcal Electronic energy + Delta-G solvation = -18097.438726 eV Core-core repulsion = 15060.232805 eV Total energy + Delta-G solvation = -3037.205921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.17899 -39.06498 -36.74366 -36.55232 -33.03073 -31.39634 -30.26039 -26.88882 -26.74969 -24.68230 -23.63998 -22.49876 -19.90808 -19.75111 -19.60041 -18.40164 -17.72729 -16.92937 -16.81834 -15.32854 -14.71837 -14.17139 -13.75442 -13.65171 -13.46695 -13.26160 -12.77525 -12.45379 -12.06807 -11.85713 -11.74786 -11.53128 -11.32537 -11.26704 -11.10653 -10.82877 -10.37499 -10.19406 -10.14829 -9.96517 -9.63889 -8.98762 -8.75279 -8.35622 -7.54021 -6.38223 -4.08109 -0.47587 0.39972 1.01414 1.17627 1.52980 2.11471 3.40834 3.43257 3.59268 4.42585 4.48832 4.56324 4.87053 5.06753 5.24146 5.30702 5.40310 5.54659 5.89822 5.97863 6.02001 6.06067 6.11735 6.22622 6.57897 6.83354 6.89503 7.14025 7.21014 7.43961 7.73379 8.10835 8.24546 8.54792 8.83095 9.59277 10.97428 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030462 B = 0.004146 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.956049 B = 6751.332465 C = 7120.771907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.152 4.152 3 C 0.204 3.796 4 H 0.026 0.974 5 C -0.572 4.572 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 1.066 2.934 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.286 1.286 13 N -0.671 5.671 14 C 0.112 3.888 15 C -0.106 4.106 16 C -0.141 4.141 17 S 0.224 5.776 18 C -0.188 4.188 19 N 0.065 4.935 20 O -0.151 6.151 21 O -0.163 6.163 22 C -0.018 4.018 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.027 0.973 26 H 0.070 0.930 27 H 0.020 0.980 28 H 0.268 0.732 29 H 0.330 0.670 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.190 0.810 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 3.836 14.078 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.192 4.192 3 C 0.096 3.904 4 H 0.044 0.956 5 C -0.611 4.611 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.551 5.551 9 Si 0.895 3.105 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.212 1.212 13 N -0.303 5.303 14 C -0.020 4.020 15 C -0.118 4.118 16 C -0.279 4.279 17 S 0.490 5.510 18 C -0.389 4.389 19 N 0.584 4.416 20 O -0.367 6.367 21 O -0.377 6.377 22 C -0.056 4.056 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.148 0.852 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.208 0.792 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.557 5.985 12.723 14.071 hybrid contribution -0.170 -2.345 1.232 2.654 sum 0.387 3.640 13.955 14.427 Atomic orbital electron populations 1.21548 0.96592 0.98431 1.01975 1.22221 0.96338 1.00996 0.99633 1.19370 0.95650 0.88711 0.86683 0.95619 1.21824 1.31570 1.16750 0.90908 0.92565 1.25701 0.96912 0.96032 0.99730 1.70790 1.21154 1.27174 1.36001 0.83576 0.75796 0.75541 0.75586 1.21520 1.21482 1.21224 1.60964 1.03483 1.62946 1.02869 1.20725 0.97290 0.97451 0.86487 1.18972 1.00570 0.93788 0.98426 1.26301 1.03245 1.00234 0.98166 1.84567 1.46835 1.04166 1.15433 1.25845 1.14403 1.02411 0.96191 1.42518 0.98423 1.00353 1.00312 1.94574 1.54139 1.02215 1.85813 1.94560 1.61559 1.58520 1.23054 1.20360 0.93093 1.02409 0.89692 0.94671 0.91164 0.95356 0.91115 0.96135 0.92040 0.85155 0.94502 0.89902 0.79249 0.81747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.38 37.16 0.35 -2.19 16 2 C -0.15 -3.23 5.46 -26.73 -0.15 -3.38 16 3 C 0.20 4.59 1.97 -68.86 -0.14 4.46 16 4 H 0.03 0.63 7.24 -51.93 -0.38 0.26 16 5 C -0.57 -14.76 7.33 -34.44 -0.25 -15.01 16 6 H 0.06 1.51 7.83 -52.48 -0.41 1.09 16 7 C 0.02 0.53 5.25 -17.82 -0.09 0.44 16 8 N -0.91 -25.78 12.90 55.43 0.72 -25.07 16 9 Si 1.07 24.17 29.91 -169.99 -5.08 19.09 16 10 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.67 -12.58 6.26 -109.22 -0.68 -13.26 16 14 C 0.11 1.67 5.73 -4.97 -0.03 1.64 16 15 C -0.11 -1.31 5.27 -106.25 -0.56 -1.87 16 16 C -0.14 -1.48 10.98 29.04 0.32 -1.16 16 17 S 0.22 2.28 23.14 -107.50 -2.49 -0.20 16 18 C -0.19 -2.40 7.50 -11.32 -0.08 -2.49 16 19 N 0.06 0.94 4.45 33.44 0.15 1.09 16 20 O -0.15 -2.28 18.94 -29.46 -0.56 -2.84 16 21 O -0.16 -2.42 19.08 -29.46 -0.56 -2.98 16 22 C -0.02 -0.23 9.60 -41.21 -0.40 -0.62 16 23 H 0.03 0.63 6.34 -51.93 -0.33 0.30 16 24 H 0.07 1.55 7.20 -51.93 -0.37 1.18 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 1.69 6.26 -51.93 -0.32 1.36 16 27 H 0.02 0.39 7.44 -51.93 -0.39 0.00 16 28 H 0.27 7.49 6.01 -40.82 -0.25 7.24 16 29 H 0.33 6.02 6.45 -39.29 -0.25 5.77 16 30 H 0.04 0.54 7.42 -51.93 -0.39 0.16 16 31 H 0.08 1.22 8.11 -51.93 -0.42 0.80 16 32 H 0.19 1.64 8.06 -52.48 -0.42 1.21 16 33 H 0.17 1.92 8.01 -52.49 -0.42 1.50 16 LS Contribution 298.97 15.07 4.51 4.51 Total: -1.00 -28.32 298.97 -8.60 -36.92 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -3.57 Total: 2.94 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -1.03 Total: -20.19 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.18 Total: -37.24 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -1.12 Total: -5.82 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.08 Total: 19.09 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.49 Total: -0.20 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.32 -8.60 -36.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183899.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.408 kcal (2) G-P(sol) polarization free energy of solvation -28.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds