Wall clock time and date at job start Mon Mar 30 2020 01:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47249 * 2 1 4 4 H 1.08991 * 109.47510 * 185.54534 * 3 2 1 5 5 C 1.50706 * 109.46739 * 305.54432 * 3 2 1 6 6 H 1.08003 * 119.99868 * 116.62881 * 5 3 2 7 7 C 1.37872 * 119.99899 * 296.62584 * 5 3 2 8 8 N 1.31522 * 120.00159 * 352.49746 * 7 5 3 9 9 Si 1.86800 * 120.00022 * 172.50083 * 7 5 3 10 10 H 1.48500 * 109.47220 * 269.99785 * 9 7 5 11 11 H 1.48500 * 109.47225 * 30.00181 * 9 7 5 12 12 H 1.48502 * 109.47286 * 149.99808 * 9 7 5 13 13 N 1.46902 * 109.47053 * 65.53872 * 3 2 1 14 14 C 1.46901 * 110.99555 * 87.04866 * 13 3 2 15 15 C 1.50704 * 109.46759 * 184.51735 * 14 13 3 16 16 C 1.33393 * 122.53977 * 269.71048 * 15 14 13 17 17 S 1.75880 * 109.59306 * 179.87178 * 16 15 14 18 18 C 1.75884 * 90.97115 * 0.33038 * 17 16 15 19 19 N 1.48036 * 125.20376 * 179.83364 * 18 17 16 20 20 O 1.21803 * 120.00040 * 179.97438 * 19 18 17 21 21 O 1.21796 * 119.99976 * 359.97438 * 19 18 17 22 22 C 1.33389 * 109.59230 * 359.81342 * 18 17 16 23 23 H 1.08998 * 109.47431 * 303.33000 * 1 2 3 24 24 H 1.08999 * 109.46995 * 63.33313 * 1 2 3 25 25 H 1.09007 * 109.47015 * 183.32903 * 1 2 3 26 26 H 1.09004 * 109.47335 * 239.99571 * 2 1 3 27 27 H 1.08999 * 109.46758 * 119.99756 * 2 1 3 28 28 H 0.96994 * 119.99739 * 355.70129 * 8 7 5 29 29 H 1.00899 * 111.00231 * 323.09550 * 13 3 2 30 30 H 1.08995 * 109.47274 * 304.51201 * 14 13 3 31 31 H 1.08996 * 109.47065 * 64.51795 * 14 13 3 32 32 H 1.08004 * 125.20045 * 359.97438 * 16 15 14 33 33 H 1.07997 * 122.53934 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1254 1.4441 -0.0993 5 6 1.4287 2.1914 -1.1561 6 1 0.7765 3.0321 -0.9706 7 6 1.7019 1.8033 -2.4506 8 7 2.6076 0.8782 -2.6825 9 14 0.7859 2.5914 -3.8751 10 1 -0.4442 1.8115 -4.1646 11 1 0.4161 3.9840 -3.5159 12 1 1.6576 2.6052 -5.0772 13 7 1.6625 2.0953 1.2607 14 6 2.6713 1.8541 2.3010 15 6 2.1985 2.4427 3.6052 16 6 2.4775 3.6950 3.9703 17 16 1.7599 4.0249 5.5418 18 6 1.1104 2.3924 5.6214 19 7 0.3122 1.8451 6.7416 20 8 -0.0920 0.6970 6.6975 21 8 0.0597 2.5430 7.7074 22 6 1.4467 1.7229 4.5178 23 1 -0.3634 0.5646 0.8586 24 1 -0.3633 0.4612 -0.9184 25 1 -0.3633 -1.0260 0.0597 26 1 1.8934 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 3.1273 0.5137 -1.9491 29 1 0.7495 1.7928 1.5654 30 1 2.8213 0.7811 2.4198 31 1 3.6117 2.3225 2.0107 32 1 3.0543 4.3991 3.3890 33 1 1.1549 0.6968 4.3492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183899.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:14 Heat of formation + Delta-G solvation = 10.329841 kcal Electronic energy + Delta-G solvation = -18098.139257 eV Core-core repulsion = 15060.232805 eV Total energy + Delta-G solvation = -3037.906452 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.25299 -40.12490 -38.23742 -37.75243 -34.66697 -32.90272 -31.57793 -28.43580 -27.77107 -26.28713 -25.37551 -23.59119 -21.49031 -20.89172 -20.71023 -19.42705 -18.80306 -18.73314 -17.82870 -16.73199 -16.11836 -15.61123 -15.42640 -15.09526 -14.63568 -14.46164 -14.21683 -13.76607 -13.40687 -13.32262 -13.01983 -12.85643 -12.62973 -12.61553 -12.46277 -12.23424 -11.99647 -11.92308 -11.90494 -11.67299 -10.67396 -10.55579 -10.36399 -9.86726 -9.07965 -8.47130 -6.17268 -1.48675 -0.51617 -0.01822 0.24693 0.57688 1.13572 1.57588 1.63543 1.80920 2.61498 3.27702 3.38979 3.67479 3.72338 3.91512 4.18380 4.32086 4.35400 4.41461 4.48824 4.57699 4.76469 4.91931 4.98198 5.04040 5.13183 5.21417 5.41821 5.53738 5.97153 6.23078 6.30876 6.55488 6.67738 6.80588 7.56732 8.88752 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030462 B = 0.004146 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.956049 B = 6751.332465 C = 7120.771907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.145 4.145 3 C 0.208 3.792 4 H 0.002 0.998 5 C -0.573 4.573 6 H 0.044 0.956 7 C -0.025 4.025 8 N -0.941 5.941 9 Si 1.105 2.895 10 H -0.279 1.279 11 H -0.275 1.275 12 H -0.290 1.290 13 N -0.676 5.676 14 C 0.117 3.883 15 C -0.122 4.122 16 C -0.124 4.124 17 S 0.284 5.716 18 C -0.213 4.213 19 N 0.066 4.934 20 O -0.176 6.176 21 O -0.170 6.170 22 C -0.015 4.015 23 H 0.052 0.948 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.259 0.741 29 H 0.333 0.667 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.213 0.787 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 5.066 14.954 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.185 4.185 3 C 0.099 3.901 4 H 0.019 0.981 5 C -0.612 4.612 6 H 0.063 0.937 7 C -0.223 4.223 8 N -0.579 5.579 9 Si 0.929 3.071 10 H -0.205 1.205 11 H -0.200 1.200 12 H -0.216 1.216 13 N -0.307 5.307 14 C -0.014 4.014 15 C -0.133 4.133 16 C -0.263 4.263 17 S 0.550 5.450 18 C -0.414 4.414 19 N 0.581 4.419 20 O -0.388 6.388 21 O -0.384 6.384 22 C -0.052 4.052 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.230 0.770 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.267 7.192 13.640 15.422 hybrid contribution -0.023 -2.619 1.036 2.817 sum 0.244 4.573 14.676 15.373 Atomic orbital electron populations 1.21467 0.95349 0.99786 1.01318 1.22090 0.97360 0.99916 0.99149 1.19120 0.93830 0.89382 0.87776 0.98055 1.22082 1.30674 1.16257 0.92145 0.93739 1.26807 0.97070 0.96040 1.02386 1.70887 1.22540 1.28768 1.35720 0.83060 0.75140 0.75680 0.73194 1.20462 1.20018 1.21613 1.60790 1.04578 1.62605 1.02746 1.20638 0.96273 0.97962 0.86540 1.18639 1.02363 0.94649 0.97647 1.26679 1.01481 0.99721 0.98403 1.84479 1.44893 1.01656 1.13957 1.25987 1.15364 1.04143 0.95864 1.42710 0.98353 1.00194 1.00631 1.94568 1.55203 1.02772 1.86254 1.94538 1.61790 1.58389 1.23695 1.20364 0.92719 1.02639 0.89520 0.92911 0.93829 0.93333 0.94176 0.93931 0.93039 0.84781 0.94295 0.89785 0.77040 0.81603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.69 9.38 71.98 0.68 -4.02 16 2 C -0.15 -6.12 5.46 30.59 0.17 -5.96 16 3 C 0.21 9.34 1.97 44.17 0.09 9.43 16 4 H 0.00 0.08 7.24 -2.39 -0.02 0.06 16 5 C -0.57 -29.59 7.33 25.60 0.19 -29.40 16 6 H 0.04 2.36 7.83 -2.91 -0.02 2.34 16 7 C -0.02 -1.32 5.25 84.65 0.44 -0.88 16 8 N -0.94 -53.92 12.90 21.45 0.28 -53.65 16 9 Si 1.10 48.54 29.91 68.60 2.05 50.60 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 13 N -0.68 -24.47 6.26 -499.46 -3.13 -27.60 16 14 C 0.12 3.29 5.73 85.56 0.49 3.78 16 15 C -0.12 -2.73 5.27 -20.92 -0.11 -2.84 16 16 C -0.12 -2.20 10.98 66.72 0.73 -1.47 16 17 S 0.28 4.89 23.14 -56.49 -1.31 3.58 16 18 C -0.21 -5.02 7.50 80.82 0.61 -4.41 16 19 N 0.07 1.84 4.45 -48.12 -0.21 1.63 16 20 O -0.18 -5.27 18.94 18.88 0.36 -4.92 16 21 O -0.17 -4.85 19.08 18.89 0.36 -4.49 16 22 C -0.01 -0.34 9.60 21.22 0.20 -0.14 16 23 H 0.05 1.82 6.34 -2.39 -0.02 1.80 16 24 H 0.04 1.89 7.20 -2.39 -0.02 1.88 16 25 H 0.05 1.64 8.14 -2.38 -0.02 1.63 16 26 H 0.04 1.93 6.26 -2.38 -0.01 1.92 16 27 H 0.04 1.58 7.44 -2.39 -0.02 1.56 16 28 H 0.26 14.87 6.01 -92.71 -0.56 14.32 16 29 H 0.33 11.60 6.45 -89.69 -0.58 11.02 16 30 H 0.04 1.09 7.42 -2.39 -0.02 1.07 16 31 H 0.08 2.34 8.11 -2.39 -0.02 2.32 16 32 H 0.21 2.80 8.06 -2.91 -0.02 2.78 16 33 H 0.17 3.66 8.01 -2.91 -0.02 3.64 16 Total: -1.00 -60.85 298.97 2.66 -58.19 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.78 Total: 12.54 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 3.48 Total: -35.90 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -3.06 Total: -79.61 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.72 Total: -9.40 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.05 Total: 50.60 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -1.31 Total: 3.58 kcal Total: -60.85 2.66 -58.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183899.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.524 kcal (2) G-P(sol) polarization free energy of solvation -60.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds