Wall clock time and date at job start Mon Mar 30 2020 01:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46857 * 2 1 4 4 H 1.09003 * 109.46673 * 177.62105 * 3 2 1 5 5 C 1.50695 * 109.47320 * 57.62597 * 3 2 1 6 6 H 1.08002 * 120.00188 * 239.99342 * 5 3 2 7 7 C 1.37874 * 120.00103 * 59.99628 * 5 3 2 8 8 N 1.31516 * 120.00082 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99965 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47253 * 60.00216 * 9 7 5 11 11 H 1.48504 * 109.47015 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47104 * 299.99868 * 9 7 5 13 13 N 1.46893 * 109.47450 * 297.62074 * 3 2 1 14 14 C 1.46901 * 111.00194 * 274.15467 * 13 3 2 15 15 C 1.50704 * 109.47151 * 184.22206 * 14 13 3 16 16 C 1.33383 * 122.54079 * 90.01871 * 15 14 13 17 17 S 1.75889 * 109.59272 * 179.97438 * 16 15 14 18 18 C 1.75879 * 90.96987 * 0.02562 * 17 16 15 19 19 N 1.48043 * 125.20195 * 179.97438 * 18 17 16 20 20 O 1.21805 * 119.99837 * 180.02562 * 19 18 17 21 21 O 1.21795 * 120.00088 * 0.02562 * 19 18 17 22 22 C 1.33384 * 109.59417 * 359.74995 * 18 17 16 23 23 H 1.09002 * 109.46791 * 294.77685 * 1 2 3 24 24 H 1.09007 * 109.46720 * 54.76962 * 1 2 3 25 25 H 1.08992 * 109.47475 * 174.77135 * 1 2 3 26 26 H 1.08990 * 109.46836 * 240.00094 * 2 1 3 27 27 H 1.08998 * 109.46494 * 119.99918 * 2 1 3 28 28 H 0.97005 * 120.00079 * 180.02562 * 8 7 5 29 29 H 1.00897 * 111.00251 * 150.19385 * 13 3 2 30 30 H 1.09002 * 109.47087 * 304.21556 * 14 13 3 31 31 H 1.08994 * 109.47435 * 64.22105 * 14 13 3 32 32 H 1.07998 * 125.20370 * 0.02562 * 16 15 14 33 33 H 1.08007 * 122.54229 * 180.23892 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4428 0.0427 5 6 1.4902 2.1697 1.1999 6 1 0.8739 3.0462 1.0646 7 6 1.7739 1.7161 2.4706 8 7 2.5248 0.6491 2.6355 9 14 1.0918 2.6172 3.9580 10 1 -0.3921 2.6162 3.8998 11 1 1.5394 1.9345 5.1985 12 1 1.5862 4.0174 3.9582 13 7 1.5979 2.1182 -1.2271 14 6 2.5363 1.8733 -2.3304 15 6 2.1072 2.6636 -3.5397 16 6 2.5325 3.9061 -3.7727 17 16 1.8243 4.5011 -5.2687 18 6 0.9645 2.9843 -5.5000 19 7 0.0698 2.6754 -6.6383 20 8 -0.4799 1.5905 -6.7038 21 8 -0.1166 3.5062 -7.5092 22 6 1.2458 2.1531 -4.4954 23 1 -0.3633 0.4307 0.9331 24 1 -0.3633 0.5929 -0.8395 25 1 -0.3634 -1.0233 -0.0936 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.7242 0.3297 3.5296 29 1 1.4738 3.1073 -1.0706 30 1 3.5378 2.1826 -2.0310 31 1 2.5417 0.8109 -2.5738 32 1 3.2089 4.4616 -3.1400 33 1 0.8304 1.1582 -4.4310 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183900.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:17 Heat of formation + Delta-G solvation = 27.720203 kcal Electronic energy + Delta-G solvation = -18029.674713 eV Core-core repulsion = 14992.522364 eV Total energy + Delta-G solvation = -3037.152349 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.10896 -38.95463 -36.62083 -36.11809 -32.90459 -31.32918 -30.20197 -27.11078 -26.68882 -24.92424 -23.24579 -22.36182 -19.83615 -19.64770 -19.11143 -18.33605 -17.65613 -16.83368 -16.52447 -15.11831 -14.71551 -14.22558 -14.05472 -13.43961 -13.33389 -13.03929 -12.56877 -12.27054 -11.87076 -11.75842 -11.67582 -11.42355 -11.25779 -11.18206 -10.97277 -10.83450 -10.49505 -10.21482 -9.86021 -9.61066 -9.45780 -8.97090 -8.82864 -8.57022 -7.47092 -6.12210 -4.18346 -0.40861 0.45873 1.07027 1.23293 1.59331 2.20449 3.23631 3.29399 3.31686 4.31382 4.53404 4.59878 4.95880 5.17547 5.21845 5.32813 5.53214 5.64052 5.98923 6.12482 6.18266 6.43673 6.61733 6.75681 7.12024 7.15197 7.37728 7.50902 7.62559 7.66674 7.72189 8.10204 8.21622 8.47742 8.88551 9.46954 10.93671 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.004125 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.948901 B = 6785.822966 C = 7162.036996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.217 3.783 4 H 0.003 0.997 5 C -0.517 4.517 6 H 0.058 0.942 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.113 3.887 15 C -0.097 4.097 16 C -0.163 4.163 17 S 0.218 5.782 18 C -0.189 4.189 19 N 0.065 4.935 20 O -0.148 6.148 21 O -0.166 6.166 22 C -0.002 4.002 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.014 0.986 26 H 0.010 0.990 27 H 0.086 0.914 28 H 0.262 0.738 29 H 0.332 0.668 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.187 0.813 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 5.311 -12.624 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.110 3.890 4 H 0.021 0.979 5 C -0.555 4.555 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.312 5.312 14 C -0.018 4.018 15 C -0.109 4.109 16 C -0.301 4.301 17 S 0.484 5.516 18 C -0.389 4.389 19 N 0.584 4.416 20 O -0.366 6.366 21 O -0.379 6.379 22 C -0.039 4.039 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.204 0.796 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.606 6.236 -12.971 14.481 hybrid contribution 0.050 -0.413 1.680 1.730 sum 1.656 5.822 -11.292 12.812 Atomic orbital electron populations 1.21445 0.97394 0.97275 1.01613 1.21440 0.95210 0.98031 0.99441 1.19177 0.93473 0.91729 0.84664 0.97930 1.21092 1.32034 1.12129 0.90269 0.92363 1.24866 0.94967 0.94974 0.98855 1.69868 1.37191 1.23019 1.22497 0.86628 0.79541 0.79698 0.81958 1.20155 1.21270 1.20387 1.60805 1.46820 1.16296 1.07281 1.20726 0.94598 0.98559 0.87941 1.19034 0.98430 0.94910 0.98519 1.26287 1.04600 0.99112 1.00096 1.84528 1.39064 1.09447 1.18585 1.25871 1.10811 1.04521 0.97717 1.42523 0.98818 1.00169 1.00087 1.94578 1.48600 1.10613 1.82773 1.94554 1.67570 1.43634 1.32178 1.20356 0.93063 1.01310 0.89173 0.92877 0.93538 0.96718 0.97080 0.89546 0.92781 0.85030 0.94235 0.90105 0.79629 0.81323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.46 37.16 0.35 -2.23 16 2 C -0.10 -2.33 5.57 -26.73 -0.15 -2.48 16 3 C 0.22 4.92 2.30 -68.87 -0.16 4.76 16 4 H 0.00 0.08 7.72 -51.93 -0.40 -0.32 16 5 C -0.52 -12.98 7.31 -34.44 -0.25 -13.23 16 6 H 0.06 1.46 7.60 -52.49 -0.40 1.06 16 7 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -23.92 11.34 55.43 0.63 -23.29 16 9 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.68 -12.56 5.57 -109.23 -0.61 -13.17 16 14 C 0.11 1.68 5.78 -4.97 -0.03 1.65 16 15 C -0.10 -1.19 5.27 -106.25 -0.56 -1.75 16 16 C -0.16 -1.66 10.98 29.04 0.32 -1.34 16 17 S 0.22 2.23 23.14 -107.50 -2.49 -0.26 16 18 C -0.19 -2.46 7.50 -11.32 -0.08 -2.54 16 19 N 0.06 0.96 4.46 33.44 0.15 1.11 16 20 O -0.15 -2.29 18.94 -29.46 -0.56 -2.85 16 21 O -0.17 -2.51 19.08 -29.46 -0.56 -3.07 16 22 C 0.00 -0.03 9.60 -41.21 -0.40 -0.43 16 23 H 0.05 1.24 7.35 -51.93 -0.38 0.86 16 24 H 0.05 0.96 7.52 -51.93 -0.39 0.57 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.01 0.22 7.53 -51.93 -0.39 -0.17 16 27 H 0.09 2.20 6.14 -51.93 -0.32 1.88 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.33 6.02 8.14 -39.29 -0.32 5.70 16 30 H 0.04 0.58 7.93 -51.93 -0.41 0.17 16 31 H 0.08 1.22 7.54 -51.93 -0.39 0.82 16 32 H 0.19 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.17 2.09 8.01 -52.48 -0.42 1.67 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -27.13 302.47 -8.76 -35.89 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.81 Total: 1.79 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -1.05 Total: -15.97 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.17 Total: -35.35 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -1.12 Total: -5.92 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.49 Total: -0.26 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.13 -8.76 -35.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183900.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.612 kcal (2) G-P(sol) polarization free energy of solvation -27.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds