Wall clock time and date at job start Mon Mar 30 2020 01:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46857 * 2 1 4 4 H 1.09003 * 109.46673 * 177.62105 * 3 2 1 5 5 C 1.50695 * 109.47320 * 57.62597 * 3 2 1 6 6 H 1.08002 * 120.00188 * 239.99342 * 5 3 2 7 7 C 1.37874 * 120.00103 * 59.99628 * 5 3 2 8 8 N 1.31516 * 120.00082 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99965 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47253 * 60.00216 * 9 7 5 11 11 H 1.48504 * 109.47015 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47104 * 299.99868 * 9 7 5 13 13 N 1.46893 * 109.47450 * 297.62074 * 3 2 1 14 14 C 1.46901 * 111.00194 * 274.15467 * 13 3 2 15 15 C 1.50704 * 109.47151 * 184.22206 * 14 13 3 16 16 C 1.33383 * 122.54079 * 90.01871 * 15 14 13 17 17 S 1.75889 * 109.59272 * 179.97438 * 16 15 14 18 18 C 1.75879 * 90.96987 * 0.02562 * 17 16 15 19 19 N 1.48043 * 125.20195 * 179.97438 * 18 17 16 20 20 O 1.21805 * 119.99837 * 180.02562 * 19 18 17 21 21 O 1.21795 * 120.00088 * 0.02562 * 19 18 17 22 22 C 1.33384 * 109.59417 * 359.74995 * 18 17 16 23 23 H 1.09002 * 109.46791 * 294.77685 * 1 2 3 24 24 H 1.09007 * 109.46720 * 54.76962 * 1 2 3 25 25 H 1.08992 * 109.47475 * 174.77135 * 1 2 3 26 26 H 1.08990 * 109.46836 * 240.00094 * 2 1 3 27 27 H 1.08998 * 109.46494 * 119.99918 * 2 1 3 28 28 H 0.97005 * 120.00079 * 180.02562 * 8 7 5 29 29 H 1.00897 * 111.00251 * 150.19385 * 13 3 2 30 30 H 1.09002 * 109.47087 * 304.21556 * 14 13 3 31 31 H 1.08994 * 109.47435 * 64.22105 * 14 13 3 32 32 H 1.07998 * 125.20370 * 0.02562 * 16 15 14 33 33 H 1.08007 * 122.54229 * 180.23892 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4428 0.0427 5 6 1.4902 2.1697 1.1999 6 1 0.8739 3.0462 1.0646 7 6 1.7739 1.7161 2.4706 8 7 2.5248 0.6491 2.6355 9 14 1.0918 2.6172 3.9580 10 1 -0.3921 2.6162 3.8998 11 1 1.5394 1.9345 5.1985 12 1 1.5862 4.0174 3.9582 13 7 1.5979 2.1182 -1.2271 14 6 2.5363 1.8733 -2.3304 15 6 2.1072 2.6636 -3.5397 16 6 2.5325 3.9061 -3.7727 17 16 1.8243 4.5011 -5.2687 18 6 0.9645 2.9843 -5.5000 19 7 0.0698 2.6754 -6.6383 20 8 -0.4799 1.5905 -6.7038 21 8 -0.1166 3.5062 -7.5092 22 6 1.2458 2.1531 -4.4954 23 1 -0.3633 0.4307 0.9331 24 1 -0.3633 0.5929 -0.8395 25 1 -0.3634 -1.0233 -0.0936 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.7242 0.3297 3.5296 29 1 1.4738 3.1073 -1.0706 30 1 3.5378 2.1826 -2.0310 31 1 2.5417 0.8109 -2.5738 32 1 3.2089 4.4616 -3.1400 33 1 0.8304 1.1582 -4.4310 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183900.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:17 Heat of formation + Delta-G solvation = 12.895507 kcal Electronic energy + Delta-G solvation = -18030.317560 eV Core-core repulsion = 14992.522364 eV Total energy + Delta-G solvation = -3037.795196 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.20614 -39.99549 -37.83758 -37.63909 -34.53160 -32.88578 -31.55903 -28.71938 -27.71697 -26.45359 -25.00290 -23.47741 -21.06693 -20.82812 -20.57008 -19.37959 -18.75176 -18.34058 -17.76565 -16.88724 -16.06243 -15.64435 -15.42038 -14.95268 -14.42484 -14.27887 -13.93907 -13.86207 -13.38286 -13.08005 -12.83498 -12.80143 -12.68515 -12.56572 -12.42153 -12.40279 -12.17936 -11.86451 -11.59936 -11.29659 -10.79879 -10.55651 -10.49009 -9.77350 -9.00473 -8.08309 -6.19556 -1.43544 -0.46619 0.02464 0.29750 0.62972 1.21458 1.43610 1.45988 1.51800 2.43930 3.21636 3.49592 3.71547 3.82624 4.07321 4.27902 4.47059 4.58837 4.66102 4.82517 4.84665 4.96546 5.05051 5.11412 5.31700 5.41376 5.57965 5.72898 5.82494 5.90793 6.30137 6.35387 6.47998 6.79331 7.03938 7.49284 8.96321 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.004125 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.948901 B = 6785.822966 C = 7162.036996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C 0.223 3.777 4 H -0.025 1.025 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.915 5.915 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.271 1.271 13 N -0.680 5.680 14 C 0.119 3.881 15 C -0.114 4.114 16 C -0.138 4.138 17 S 0.278 5.722 18 C -0.215 4.215 19 N 0.066 4.934 20 O -0.178 6.178 21 O -0.171 6.171 22 C -0.002 4.002 23 H 0.029 0.971 24 H 0.053 0.947 25 H 0.031 0.969 26 H 0.025 0.975 27 H 0.056 0.944 28 H 0.260 0.740 29 H 0.336 0.664 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.215 0.785 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.637 6.973 -13.106 14.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.139 4.139 3 C 0.115 3.885 4 H -0.007 1.007 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.775 3.225 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.196 1.196 13 N -0.311 5.311 14 C -0.012 4.012 15 C -0.126 4.126 16 C -0.277 4.277 17 S 0.544 5.456 18 C -0.415 4.415 19 N 0.581 4.419 20 O -0.389 6.389 21 O -0.385 6.385 22 C -0.039 4.039 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.153 0.847 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.232 0.768 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.786 7.878 -13.483 15.718 hybrid contribution 0.061 -0.835 1.781 1.968 sum 1.847 7.043 -11.703 13.783 Atomic orbital electron populations 1.21313 0.96394 0.98319 1.00552 1.21334 0.95986 0.97951 0.98624 1.18919 0.91598 0.91996 0.85969 1.00715 1.21402 1.31423 1.12024 0.91270 0.92452 1.25540 0.95384 0.95643 1.01308 1.69999 1.38465 1.24278 1.22680 0.85761 0.78774 0.78901 0.79076 1.20103 1.21478 1.19610 1.60654 1.47883 1.16199 1.06356 1.20613 0.94105 0.98930 0.87585 1.18668 1.00139 0.95776 0.98005 1.26696 1.02931 0.98132 0.99933 1.84442 1.36973 1.06903 1.17249 1.26015 1.11693 1.06470 0.97368 1.42729 0.98854 0.99887 1.00444 1.94572 1.49834 1.11107 1.83426 1.94528 1.67715 1.43485 1.32778 1.20353 0.92968 1.01337 0.89239 0.95211 0.92778 0.94982 0.95619 0.92585 0.93091 0.84682 0.93665 0.90585 0.76839 0.81744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.59 9.46 71.98 0.68 -3.91 16 2 C -0.10 -4.54 5.57 30.60 0.17 -4.37 16 3 C 0.22 10.11 2.30 44.17 0.10 10.21 16 4 H -0.02 -1.24 7.72 -2.39 -0.02 -1.26 16 5 C -0.52 -26.10 7.31 25.60 0.19 -25.92 16 6 H 0.06 2.82 7.60 -2.91 -0.02 2.80 16 7 C 0.02 1.08 5.30 84.65 0.45 1.52 16 8 N -0.91 -49.94 11.34 21.45 0.24 -49.70 16 9 Si 0.95 41.39 29.54 68.60 2.03 43.42 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 N -0.68 -24.25 5.57 -499.48 -2.78 -27.03 16 14 C 0.12 3.34 5.78 85.56 0.49 3.84 16 15 C -0.11 -2.55 5.27 -20.92 -0.11 -2.66 16 16 C -0.14 -2.32 10.98 66.72 0.73 -1.58 16 17 S 0.28 4.78 23.14 -56.49 -1.31 3.47 16 18 C -0.21 -5.22 7.50 80.82 0.61 -4.61 16 19 N 0.07 1.91 4.46 -48.12 -0.21 1.69 16 20 O -0.18 -5.53 18.94 18.88 0.36 -5.18 16 21 O -0.17 -4.99 19.08 18.89 0.36 -4.63 16 22 C 0.00 -0.04 9.60 21.22 0.20 0.17 16 23 H 0.03 1.36 7.35 -2.39 -0.02 1.35 16 24 H 0.05 2.18 7.52 -2.38 -0.02 2.16 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.03 1.05 7.53 -2.39 -0.02 1.03 16 27 H 0.06 2.90 6.14 -2.39 -0.01 2.88 16 28 H 0.26 13.71 8.31 -92.70 -0.77 12.94 16 29 H 0.34 11.56 8.14 -89.70 -0.73 10.83 16 30 H 0.05 1.24 7.93 -2.39 -0.02 1.22 16 31 H 0.08 2.21 7.54 -2.39 -0.02 2.19 16 32 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.17 4.00 8.01 -2.91 -0.02 3.97 16 Total: -1.00 -58.05 302.47 2.61 -55.44 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.41 Total: 9.84 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 3.52 Total: -27.32 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -2.75 Total: -75.04 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.72 Total: -9.81 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.31 Total: 3.47 kcal Total: -58.05 2.61 -55.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183900.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.334 kcal (2) G-P(sol) polarization free energy of solvation -58.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds