Wall clock time and date at job start Mon Mar 30 2020 01:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47246 * 2 1 4 4 N 1.46508 * 109.46905 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99690 * 90.00344 * 4 3 2 6 6 H 1.07999 * 120.00027 * 36.02234 * 5 4 3 7 7 C 1.38815 * 119.99497 * 216.29860 * 5 4 3 8 8 N 1.31618 * 119.99509 * 214.01300 * 7 5 4 9 9 Si 1.86798 * 120.00116 * 34.00895 * 7 5 4 10 10 H 1.48503 * 109.46738 * 95.50767 * 9 7 5 11 11 H 1.48499 * 109.47148 * 215.50915 * 9 7 5 12 12 H 1.48502 * 109.47107 * 335.51076 * 9 7 5 13 13 C 1.46495 * 120.00217 * 269.99697 * 4 3 2 14 14 C 1.50707 * 109.47147 * 275.77903 * 13 4 3 15 15 C 1.33390 * 122.54180 * 95.38452 * 14 13 4 16 16 S 1.75874 * 109.59499 * 179.97438 * 15 14 13 17 17 C 1.75886 * 90.96995 * 359.97438 * 16 15 14 18 18 N 1.48043 * 125.20017 * 179.97438 * 17 16 15 19 19 O 1.21806 * 119.99488 * 180.02562 * 18 17 16 20 20 O 1.21792 * 120.00346 * 0.02626 * 18 17 16 21 21 C 1.33384 * 109.59258 * 359.75384 * 17 16 15 22 22 H 1.08988 * 109.47418 * 300.00519 * 1 2 3 23 23 H 1.09005 * 109.46889 * 60.00571 * 1 2 3 24 24 H 1.09001 * 109.47148 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47584 * 239.99731 * 2 1 3 26 26 H 1.09005 * 109.47053 * 119.99958 * 2 1 3 27 27 H 1.08999 * 109.47646 * 59.99848 * 3 2 1 28 28 H 1.08998 * 109.46992 * 299.99294 * 3 2 1 29 29 H 0.97006 * 119.99637 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.46895 * 35.77506 * 13 4 3 31 31 H 1.08993 * 109.47539 * 155.77500 * 13 4 3 32 32 H 1.07998 * 125.19977 * 359.97438 * 15 14 13 33 33 H 1.08001 * 122.53938 * 180.24167 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1902 1.4422 -1.1851 6 1 3.8054 1.9922 -2.0311 7 6 5.3763 0.7304 -1.3011 8 7 6.3452 1.1865 -2.0663 9 14 5.5973 -0.8745 -0.3712 10 1 5.2529 -2.0131 -1.2602 11 1 7.0096 -1.0005 0.0701 12 1 4.7049 -0.8857 0.8158 13 6 4.2370 1.4426 1.2696 14 6 4.3642 2.8563 1.7759 15 6 3.5127 3.3819 2.6580 16 16 3.9774 5.0412 3.0098 17 6 5.3427 4.9242 1.9072 18 7 6.3086 6.0105 1.6267 19 8 7.2223 5.8256 0.8427 20 8 6.1897 7.0891 2.1799 21 6 5.3775 3.7056 1.3661 22 1 -0.3633 0.5138 0.8898 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6768 1.9562 -0.8900 29 1 7.1742 0.6893 -2.1471 30 1 3.6963 0.8419 2.0010 31 1 5.2303 1.0208 1.1162 32 1 2.6673 2.8671 3.0900 33 1 6.1366 3.4054 0.6590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058921188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:05 Heat of formation + Delta-G solvation = 49.810530 kcal Electronic energy + Delta-G solvation = -18596.318836 eV Core-core repulsion = 15560.124395 eV Total energy + Delta-G solvation = -3036.194441 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.74533 -38.61721 -36.29908 -36.00937 -33.06206 -31.72086 -30.49257 -26.98878 -26.34742 -25.74365 -22.75846 -22.01495 -20.35192 -19.47067 -19.23435 -17.94729 -17.30021 -16.95394 -16.36263 -15.27962 -14.72660 -14.39804 -14.16363 -13.39556 -13.13887 -12.88954 -12.66248 -12.58428 -12.28288 -11.64669 -11.34936 -11.33845 -11.25955 -11.02184 -10.90889 -10.83370 -10.80855 -10.67194 -10.30957 -10.06208 -9.73539 -9.17621 -8.66154 -8.45309 -7.11583 -6.26662 -3.54305 -0.01167 0.85239 1.45726 1.63685 2.00178 2.66660 3.22115 3.35782 3.39423 4.35900 4.81501 4.94139 5.01082 5.11715 5.46261 5.49768 5.55762 5.71010 5.81655 5.88519 5.97289 6.13059 6.21741 6.29359 6.36110 6.43253 6.54003 6.56349 6.71924 6.89873 7.79623 7.88187 8.19323 8.76569 9.49539 9.90064 10.87556 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.007196 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.227320 B = 3890.113580 C = 4983.418113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.588 5.588 5 C -0.286 4.286 6 H 0.078 0.922 7 C 0.050 3.950 8 N -0.866 5.866 9 Si 0.843 3.157 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.261 1.261 13 C 0.198 3.802 14 C -0.110 4.110 15 C -0.172 4.172 16 S 0.176 5.824 17 C -0.187 4.187 18 N 0.066 4.934 19 O -0.146 6.146 20 O -0.176 6.176 21 C 0.014 3.986 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.267 0.733 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.179 0.821 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.446 1.698 10.258 12.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.023 3.977 4 N -0.308 5.308 5 C -0.414 4.414 6 H 0.096 0.904 7 C -0.154 4.154 8 N -0.504 5.504 9 Si 0.669 3.331 10 H -0.215 1.215 11 H -0.218 1.218 12 H -0.186 1.186 13 C 0.069 3.931 14 C -0.125 4.125 15 C -0.310 4.310 16 S 0.440 5.560 17 C -0.387 4.387 18 N 0.584 4.416 19 O -0.364 6.364 20 O -0.387 6.387 21 C -0.023 4.023 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.196 0.804 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.318 2.389 11.234 14.181 hybrid contribution 1.025 -1.837 -0.702 2.217 sum -7.294 0.552 10.533 12.823 Atomic orbital electron populations 1.21724 0.97029 1.00674 1.01069 1.22116 0.94003 1.00536 1.01961 1.20977 0.83802 0.93710 0.99224 1.44137 1.00500 1.84586 1.01535 1.18670 1.05060 1.27111 0.90571 0.90420 1.25461 0.95809 0.97691 0.96417 1.70071 1.03619 1.36556 1.40123 0.87404 0.77049 0.87716 0.80899 1.21453 1.21809 1.18569 1.20160 0.97944 0.86857 0.88106 1.20141 0.93554 1.02687 0.96158 1.26105 1.04792 0.96741 1.03387 1.84254 1.19136 1.11947 1.40638 1.25819 1.02924 0.94127 1.15878 1.42550 0.99837 1.00589 0.98579 1.94602 1.23848 1.87831 1.30133 1.94510 1.80183 1.11906 1.52150 1.20554 0.98295 0.89023 0.94401 0.93483 0.93023 0.93613 0.91640 0.93145 0.94436 0.92901 0.92284 0.92652 0.91041 0.80410 0.80965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.50 16 2 C -0.15 -2.35 6.26 -26.74 -0.17 -2.51 16 3 C 0.15 2.58 5.69 -4.04 -0.02 2.56 16 4 N -0.59 -12.21 2.06 -174.61 -0.36 -12.57 16 5 C -0.29 -7.21 9.79 -15.06 -0.15 -7.35 16 6 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 7 C 0.05 1.31 4.99 -17.43 -0.09 1.22 16 8 N -0.87 -24.34 13.97 55.49 0.78 -23.56 16 9 Si 0.84 19.55 26.27 -169.99 -4.47 15.08 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.26 -5.60 5.94 56.52 0.34 -5.27 16 13 C 0.20 3.69 4.16 -5.19 -0.02 3.67 16 14 C -0.11 -1.84 5.38 -106.25 -0.57 -2.42 16 15 C -0.17 -2.29 10.96 29.04 0.32 -1.98 16 16 S 0.18 2.40 23.14 -107.50 -2.49 -0.09 16 17 C -0.19 -3.28 7.50 -11.32 -0.08 -3.36 16 18 N 0.07 1.26 4.46 33.44 0.15 1.41 16 19 O -0.15 -2.95 18.94 -29.46 -0.56 -3.51 16 20 O -0.18 -3.27 19.08 -29.46 -0.56 -3.83 16 21 C 0.01 0.25 9.61 -41.21 -0.40 -0.15 16 22 H 0.05 0.53 8.14 -51.94 -0.42 0.11 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.57 8.07 -51.93 -0.42 0.15 16 28 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.07 1.47 4.57 -51.93 -0.24 1.23 16 32 H 0.18 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.17 3.53 8.01 -52.49 -0.42 3.11 16 LS Contribution 304.21 15.07 4.58 4.58 Total: -1.00 -27.71 304.21 -7.81 -35.52 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.07 Total: -1.21 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -0.81 Total: -11.81 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.57 Total: -34.72 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -1.12 Total: -7.34 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.47 Total: 15.08 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.49 Total: -0.09 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.71 -7.81 -35.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058921188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.327 kcal (2) G-P(sol) polarization free energy of solvation -27.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds