Wall clock time and date at job start Mon Mar 30 2020 01:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47246 * 2 1 4 4 N 1.46508 * 109.46905 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99690 * 90.00344 * 4 3 2 6 6 H 1.07999 * 120.00027 * 36.02234 * 5 4 3 7 7 C 1.38815 * 119.99497 * 216.29860 * 5 4 3 8 8 N 1.31618 * 119.99509 * 214.01300 * 7 5 4 9 9 Si 1.86798 * 120.00116 * 34.00895 * 7 5 4 10 10 H 1.48503 * 109.46738 * 95.50767 * 9 7 5 11 11 H 1.48499 * 109.47148 * 215.50915 * 9 7 5 12 12 H 1.48502 * 109.47107 * 335.51076 * 9 7 5 13 13 C 1.46495 * 120.00217 * 269.99697 * 4 3 2 14 14 C 1.50707 * 109.47147 * 275.77903 * 13 4 3 15 15 C 1.33390 * 122.54180 * 95.38452 * 14 13 4 16 16 S 1.75874 * 109.59499 * 179.97438 * 15 14 13 17 17 C 1.75886 * 90.96995 * 359.97438 * 16 15 14 18 18 N 1.48043 * 125.20017 * 179.97438 * 17 16 15 19 19 O 1.21806 * 119.99488 * 180.02562 * 18 17 16 20 20 O 1.21792 * 120.00346 * 0.02626 * 18 17 16 21 21 C 1.33384 * 109.59258 * 359.75384 * 17 16 15 22 22 H 1.08988 * 109.47418 * 300.00519 * 1 2 3 23 23 H 1.09005 * 109.46889 * 60.00571 * 1 2 3 24 24 H 1.09001 * 109.47148 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47584 * 239.99731 * 2 1 3 26 26 H 1.09005 * 109.47053 * 119.99958 * 2 1 3 27 27 H 1.08999 * 109.47646 * 59.99848 * 3 2 1 28 28 H 1.08998 * 109.46992 * 299.99294 * 3 2 1 29 29 H 0.97006 * 119.99637 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.46895 * 35.77506 * 13 4 3 31 31 H 1.08993 * 109.47539 * 155.77500 * 13 4 3 32 32 H 1.07998 * 125.19977 * 359.97438 * 15 14 13 33 33 H 1.08001 * 122.53938 * 180.24167 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1902 1.4422 -1.1851 6 1 3.8054 1.9922 -2.0311 7 6 5.3763 0.7304 -1.3011 8 7 6.3452 1.1865 -2.0663 9 14 5.5973 -0.8745 -0.3712 10 1 5.2529 -2.0131 -1.2602 11 1 7.0096 -1.0005 0.0701 12 1 4.7049 -0.8857 0.8158 13 6 4.2370 1.4426 1.2696 14 6 4.3642 2.8563 1.7759 15 6 3.5127 3.3819 2.6580 16 16 3.9774 5.0412 3.0098 17 6 5.3427 4.9242 1.9072 18 7 6.3086 6.0105 1.6267 19 8 7.2223 5.8256 0.8427 20 8 6.1897 7.0891 2.1799 21 6 5.3775 3.7056 1.3661 22 1 -0.3633 0.5138 0.8898 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6768 1.9562 -0.8900 29 1 7.1742 0.6893 -2.1471 30 1 3.6963 0.8419 2.0010 31 1 5.2303 1.0208 1.1162 32 1 2.6673 2.8671 3.0900 33 1 6.1366 3.4054 0.6590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058921188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:04 Heat of formation + Delta-G solvation = 34.800084 kcal Electronic energy + Delta-G solvation = -18596.969738 eV Core-core repulsion = 15560.124395 eV Total energy + Delta-G solvation = -3036.845342 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.21397 -39.98454 -37.79823 -37.48586 -34.59587 -33.34484 -31.92427 -28.34078 -27.80757 -27.32022 -24.22027 -23.43582 -21.74658 -20.83721 -20.70799 -19.35425 -18.78484 -18.69928 -17.70053 -16.97835 -16.17612 -15.75291 -15.58386 -14.90834 -14.61484 -14.20216 -14.13914 -13.99907 -13.76375 -13.02475 -12.82955 -12.81064 -12.66628 -12.45051 -12.44107 -12.37024 -12.18754 -12.06858 -11.98189 -11.47352 -11.31594 -10.62171 -10.43446 -9.64413 -8.83678 -8.27202 -5.51223 -1.40591 -0.41542 0.07260 0.35300 0.71764 1.27798 1.36706 1.46656 1.51294 2.42208 2.99153 3.48751 3.62954 3.86349 4.12595 4.28571 4.38815 4.45792 4.51410 4.68333 4.75909 4.83209 4.90201 4.99128 5.08669 5.20882 5.21997 5.31788 5.46289 5.62885 5.90399 6.19004 6.36717 6.97871 7.63628 8.04568 8.92226 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.007196 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.227320 B = 3890.113580 C = 4983.418113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.142 4.142 3 C 0.146 3.854 4 N -0.601 5.601 5 C -0.267 4.267 6 H 0.032 0.968 7 C -0.003 4.003 8 N -0.926 5.926 9 Si 0.906 3.094 10 H -0.300 1.300 11 H -0.302 1.302 12 H -0.225 1.225 13 C 0.196 3.804 14 C -0.139 4.139 15 C -0.127 4.127 16 S 0.272 5.728 17 C -0.219 4.219 18 N 0.067 4.933 19 O -0.212 6.212 20 O -0.147 6.147 21 C -0.003 4.003 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.032 0.968 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.263 0.737 30 H 0.094 0.906 31 H 0.044 0.956 32 H 0.230 0.770 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.039 1.529 14.392 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.182 4.182 3 C 0.021 3.979 4 N -0.322 5.322 5 C -0.397 4.397 6 H 0.050 0.950 7 C -0.202 4.202 8 N -0.567 5.567 9 Si 0.732 3.268 10 H -0.228 1.228 11 H -0.229 1.229 12 H -0.148 1.148 13 C 0.068 3.932 14 C -0.153 4.153 15 C -0.266 4.266 16 S 0.537 5.463 17 C -0.420 4.420 18 N 0.580 4.420 19 O -0.415 6.415 20 O -0.368 6.368 21 C -0.041 4.041 22 H 0.089 0.911 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.246 0.754 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.871 2.163 15.330 19.509 hybrid contribution 1.934 -1.567 -1.795 3.069 sum -9.937 0.596 13.535 16.802 Atomic orbital electron populations 1.21658 0.94202 1.01774 1.02131 1.22026 0.96453 0.98947 1.00729 1.21122 0.81624 0.94959 1.00169 1.44213 1.01922 1.85324 1.00769 1.18432 1.04649 1.25095 0.91500 0.95027 1.25963 0.95726 1.00416 0.98091 1.70191 1.04442 1.38084 1.43989 0.86397 0.76922 0.82839 0.80613 1.22844 1.22889 1.14755 1.20130 0.96860 0.88446 0.87715 1.19773 0.94836 1.01625 0.99016 1.26715 1.03449 0.96799 0.99626 1.84048 1.15011 1.10374 1.36903 1.26107 1.04449 0.93397 1.18000 1.42787 0.99990 1.01005 0.98199 1.94624 1.25880 1.88483 1.32482 1.94449 1.79439 1.12232 1.50696 1.20373 0.98670 0.90343 0.94726 0.91116 0.93269 0.92561 0.94903 0.92367 0.90653 0.94699 0.92837 0.88777 0.93788 0.75356 0.85132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.91 71.98 0.71 -2.28 16 2 C -0.14 -4.13 6.26 30.59 0.19 -3.93 16 3 C 0.15 4.67 5.69 86.38 0.49 5.17 16 4 N -0.60 -24.35 2.06 -706.33 -1.45 -25.81 16 5 C -0.27 -14.03 9.79 84.03 0.82 -13.21 16 6 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 7 C 0.00 -0.16 4.99 84.86 0.42 0.26 16 8 N -0.93 -55.90 13.97 21.65 0.30 -55.60 16 9 Si 0.91 41.73 26.27 68.60 1.80 43.53 16 10 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 12 H -0.23 -8.88 5.94 99.48 0.59 -8.29 16 13 C 0.20 6.81 4.16 85.64 0.36 7.17 16 14 C -0.14 -4.26 5.38 -20.92 -0.11 -4.37 16 15 C -0.13 -2.62 10.96 66.72 0.73 -1.89 16 16 S 0.27 6.01 23.14 -56.49 -1.31 4.70 16 17 C -0.22 -7.45 7.50 80.82 0.61 -6.84 16 18 N 0.07 2.56 4.46 -48.12 -0.21 2.35 16 19 O -0.21 -9.24 18.94 18.88 0.36 -8.88 16 20 O -0.15 -5.25 19.08 18.90 0.36 -4.89 16 21 C 0.00 -0.13 9.61 21.21 0.20 0.08 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.08 1.84 8.07 -2.39 -0.02 1.83 16 28 H 0.03 1.23 8.04 -2.39 -0.02 1.21 16 29 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 30 H 0.09 2.53 8.07 -2.38 -0.02 2.51 16 31 H 0.04 1.77 4.57 -2.39 -0.01 1.76 16 32 H 0.23 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.13 5.91 8.01 -2.91 -0.02 5.89 16 Total: -1.00 -67.19 304.21 5.28 -61.91 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: 1.00 Total: 2.53 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 4.43 Total: -19.85 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -1.36 Total: -79.06 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.72 Total: -13.77 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.80 Total: 43.53 kcal Atomic # 16 Polarization: 6.01 SS G_CDS: -1.31 Total: 4.70 kcal Total: -67.19 5.28 -61.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058921188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.711 kcal (2) G-P(sol) polarization free energy of solvation -67.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds