Wall clock time and date at job start Mon Mar 30 2020 01:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 C 1.76203 * 107.21595 * 89.99875 * 14 12 2 18 18 C 1.38669 * 120.42214 * 269.72240 * 17 14 12 19 19 C 1.38624 * 118.42394 * 179.78747 * 18 17 14 20 20 C 1.38226 * 119.16040 * 0.50487 * 19 18 17 21 21 N 1.31860 * 120.76183 * 359.73941 * 20 19 18 22 22 C 1.31887 * 121.72480 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 28 28 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 29 29 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 30 30 H 1.08004 * 120.78929 * 0.02562 * 18 17 14 31 31 H 1.07994 * 120.42222 * 180.22513 * 19 18 17 32 32 H 1.07999 * 119.62279 * 179.75348 * 20 19 18 33 33 H 1.07996 * 119.61456 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 6 4.6444 -0.1180 -1.7880 18 6 5.2499 0.7789 -0.9210 19 6 6.5673 0.5537 -0.5528 20 6 7.2321 -0.5438 -1.0667 21 7 6.6259 -1.3733 -1.8933 22 6 5.3721 -1.1934 -2.2607 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 0.7089 1.1611 3.4845 27 1 0.7376 -2.1442 -1.9996 28 1 2.4629 -2.5817 -1.9866 29 1 1.5295 -2.5968 -0.4711 30 1 4.7069 1.6306 -0.5386 31 1 7.0692 1.2297 0.1235 32 1 8.2598 -0.7241 -0.7880 33 1 4.9090 -1.8944 -2.9393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095180.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:14 Heat of formation + Delta-G solvation = -33.537327 kcal Electronic energy + Delta-G solvation = -19316.454020 eV Core-core repulsion = 16276.645345 eV Total energy + Delta-G solvation = -3039.808675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.93431 -36.81896 -36.24014 -35.37143 -32.68352 -32.50745 -31.36047 -29.15757 -25.60562 -25.24847 -23.86666 -23.56499 -20.82047 -18.68321 -17.57262 -16.99688 -16.59293 -16.41005 -16.24462 -15.21545 -14.54063 -14.33142 -13.92287 -13.55799 -13.28092 -13.07158 -12.77879 -12.49153 -12.05929 -11.87039 -11.62922 -11.45240 -11.27524 -11.05346 -10.94887 -10.92622 -10.50651 -10.28431 -10.18617 -9.99713 -9.54688 -9.38352 -9.27903 -8.55217 -8.04671 -6.16824 -4.25811 0.66558 0.99384 1.28950 3.20359 3.26542 3.27833 3.45245 3.76311 4.22859 4.29267 4.40991 4.60156 4.86126 5.01127 5.13622 5.24267 5.41363 5.55583 5.66354 5.97553 6.06130 6.11991 6.26191 6.60294 6.60931 6.80564 6.83081 7.03908 7.36563 7.54172 7.70214 7.82166 7.97053 8.17532 8.77104 9.40991 10.87965 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.008865 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.136258 B = 3157.828392 C = 4050.506221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.266 3.734 3 H 0.061 0.939 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.978 5.978 13 C 0.103 3.897 14 S 2.690 3.310 15 O -0.972 6.972 16 O -0.957 6.957 17 C -0.722 4.722 18 C 0.038 3.962 19 C -0.194 4.194 20 C 0.139 3.861 21 N -0.502 5.502 22 C 0.193 3.807 23 H 0.034 0.966 24 H 0.094 0.906 25 H 0.014 0.986 26 H 0.265 0.735 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.153 0.847 31 H 0.143 0.857 32 H 0.159 0.841 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.191 -2.156 -5.218 9.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.078 0.922 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.819 5.819 13 C -0.043 4.043 14 S 2.778 3.222 15 O -0.962 6.962 16 O -0.947 6.947 17 C -0.808 4.808 18 C 0.011 3.989 19 C -0.215 4.215 20 C -0.017 4.017 21 N -0.212 5.212 22 C 0.034 3.966 23 H 0.053 0.947 24 H 0.112 0.888 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.171 0.829 31 H 0.160 0.840 32 H 0.177 0.823 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 7.325 -2.281 -6.105 9.804 hybrid contribution 0.505 -0.045 1.864 1.932 sum 7.830 -2.325 -4.240 9.203 Atomic orbital electron populations 1.22052 0.97543 0.99859 1.00925 1.18808 0.92133 0.92775 0.79954 0.92164 1.21342 1.32161 1.13274 0.90195 0.92000 1.24903 0.94872 0.94940 0.98932 1.69864 1.35954 1.22456 1.24030 0.86609 0.79131 0.79817 0.82146 1.21137 1.20167 1.20344 1.57439 1.62658 1.21757 1.40005 1.21273 0.99287 0.81558 1.02184 1.02072 0.73038 0.73806 0.73321 1.93521 1.85912 1.75715 1.41094 1.93559 1.83488 1.31313 1.86308 1.32340 1.28569 1.06348 1.13546 1.21415 0.94089 0.95362 0.88038 1.22236 0.96082 1.00391 1.02769 1.23037 0.99635 0.89137 0.89859 1.67788 1.10777 1.29186 1.13444 1.22507 0.89428 0.92265 0.92415 0.94720 0.88787 0.96665 0.92479 0.93309 0.92951 0.89960 0.82894 0.83957 0.82337 0.81485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.97 37.16 0.33 -2.97 16 2 C 0.27 6.23 2.62 -69.09 -0.18 6.05 16 3 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 4 C -0.53 -13.20 7.99 -34.44 -0.28 -13.48 16 5 H 0.06 1.52 7.33 -52.49 -0.38 1.13 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -23.54 11.32 55.43 0.63 -22.91 16 8 Si 0.90 20.02 29.54 -169.99 -5.02 14.99 16 9 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 12 N -0.98 -19.55 3.06 -115.85 -0.35 -19.90 16 13 C 0.10 1.76 9.28 59.85 0.56 2.32 16 14 S 2.69 51.14 5.65 -107.50 -0.61 50.53 16 15 O -0.97 -18.81 16.38 -57.17 -0.94 -19.74 16 16 O -0.96 -20.58 15.92 -57.17 -0.91 -21.49 16 17 C -0.72 -12.42 5.99 -39.44 -0.24 -12.66 16 18 C 0.04 0.61 9.65 -39.28 -0.38 0.23 16 19 C -0.19 -2.62 10.11 -39.44 -0.40 -3.02 16 20 C 0.14 1.84 11.18 -17.54 -0.20 1.65 16 21 N -0.50 -7.79 10.36 -13.25 -0.14 -7.93 16 22 C 0.19 3.09 10.69 -17.55 -0.19 2.90 16 23 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 24 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.76 7.79 -51.92 -0.40 0.36 16 29 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 30 H 0.15 2.45 7.71 -52.48 -0.40 2.04 16 31 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.17 2.35 7.63 -52.49 -0.40 1.95 16 LS Contribution 294.18 15.07 4.43 4.43 Total: -1.00 -30.22 294.18 -7.82 -38.05 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -3.86 Total: 1.34 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.06 Total: -17.37 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.14 Total: -50.75 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -1.85 Total: -41.23 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 51.14 SS G_CDS: -0.61 Total: 50.53 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.22 -7.82 -38.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095180.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.510 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds