Wall clock time and date at job start Mon Mar 30 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99990 * 2 1 4 4 C 1.52997 * 109.47051 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47398 * 64.99897 * 4 3 2 6 6 C 1.46497 * 120.00448 * 274.69871 * 5 4 3 7 7 C 1.50701 * 109.46802 * 263.61926 * 6 5 4 8 8 H 1.07997 * 120.00353 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00144 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99800 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00395 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47259 * 59.99972 * 11 9 7 13 13 H 1.48497 * 109.47421 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47020 * 300.00052 * 11 9 7 15 15 C 1.34782 * 120.00052 * 94.69265 * 5 4 3 16 16 O 1.21635 * 119.99745 * 354.37484 * 15 5 4 17 17 C 1.47266 * 119.99929 * 174.64931 * 15 5 4 18 18 C 1.35210 * 123.13710 * 183.90663 * 17 15 5 19 19 S 1.70946 * 108.82438 * 179.90372 * 18 17 15 20 20 C 1.70771 * 91.12837 * 0.30544 * 19 18 17 21 21 N 1.28651 * 110.56001 * 359.82124 * 20 19 18 22 22 H 1.09007 * 109.46847 * 299.99643 * 1 2 3 23 23 H 1.08998 * 109.47599 * 59.99606 * 1 2 3 24 24 H 1.09003 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46892 * 60.00015 * 3 2 1 26 26 H 1.09006 * 109.46816 * 300.00569 * 3 2 1 27 27 H 1.09002 * 109.47280 * 304.99757 * 4 3 2 28 28 H 1.09001 * 109.47082 * 185.00162 * 4 3 2 29 29 H 1.09008 * 109.46963 * 23.61044 * 6 5 4 30 30 H 1.08994 * 109.47798 * 143.61264 * 6 5 4 31 31 H 0.96999 * 120.00006 * 179.97438 * 10 9 7 32 32 H 1.07997 * 125.58637 * 0.02995 * 18 17 15 33 33 H 1.08003 * 124.72329 * 179.81759 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0067 -0.8950 -1.3760 7 6 5.4005 -1.3934 -1.0928 8 1 6.1847 -0.6931 -0.8462 9 6 5.6744 -2.7436 -1.1487 10 7 4.7193 -3.5965 -1.4485 11 14 7.4021 -3.3614 -0.7985 12 1 7.7974 -2.9718 0.5790 13 1 7.4336 -4.8408 -0.9233 14 1 8.3490 -2.7626 -1.7732 15 6 4.3521 1.3365 -2.2914 16 8 4.2299 2.5450 -2.2265 17 6 4.9057 0.7166 -3.5071 18 6 5.3736 1.4324 -4.5543 19 16 5.9278 0.3518 -5.7575 20 6 5.4947 -0.9924 -4.7973 21 7 4.9870 -0.6051 -3.6805 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.8515 0.5683 0.8410 28 1 3.9785 2.1765 0.0890 29 1 3.3114 -1.3349 -0.6609 30 1 3.7171 -1.1806 -2.3872 31 1 4.9121 -4.5463 -1.4881 32 1 5.3957 2.5102 -4.6192 33 1 5.6284 -2.0242 -5.0873 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070798485.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:13 Heat of formation + Delta-G solvation = -14.205361 kcal Electronic energy + Delta-G solvation = -19129.672615 eV Core-core repulsion = 16090.702237 eV Total energy + Delta-G solvation = -3038.970378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.89787 -38.10631 -37.17869 -34.85280 -32.40648 -30.27732 -29.59060 -26.86904 -26.07029 -25.10875 -22.97556 -22.61292 -20.77697 -18.61442 -17.64501 -16.41436 -16.14641 -16.00643 -15.37733 -15.15537 -14.78123 -14.45698 -14.22723 -14.05370 -13.12007 -12.97418 -12.83848 -12.20438 -11.91985 -11.68549 -11.58587 -11.43147 -11.22020 -10.84255 -10.80312 -10.50940 -10.04254 -9.58317 -9.40959 -9.23484 -9.15204 -8.61590 -8.49833 -8.13387 -7.56682 -5.90003 -3.89150 1.07470 1.80504 2.13954 2.78088 3.34227 3.38711 3.42127 3.95051 4.11803 4.23846 4.52331 4.86360 5.42019 5.44977 5.46279 5.55490 5.67465 5.69297 5.70059 5.72510 5.85047 5.91747 6.08471 6.38294 6.46206 6.98623 7.53579 7.69823 7.87758 8.01856 8.23820 8.41096 8.44007 8.96047 9.12951 9.69752 11.18089 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.009714 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.659296 B = 2881.635310 C = 4431.747224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.373 6.373 3 C 0.049 3.951 4 C 0.119 3.881 5 N -0.570 5.570 6 C 0.234 3.766 7 C -0.500 4.500 8 H 0.047 0.953 9 C 0.070 3.930 10 N -0.889 5.889 11 Si 0.882 3.118 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.280 1.280 15 C 0.585 3.415 16 O -0.578 6.578 17 C 0.027 3.973 18 C -0.234 4.234 19 S 0.131 5.869 20 C 0.002 3.998 21 N -0.360 5.360 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.259 0.741 32 H 0.179 0.821 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 6.503 -4.644 8.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.291 6.291 3 C -0.029 4.029 4 C -0.005 4.005 5 N -0.297 5.297 6 C 0.115 3.885 7 C -0.540 4.540 8 H 0.065 0.935 9 C -0.132 4.132 10 N -0.528 5.528 11 Si 0.711 3.289 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.206 1.206 15 C 0.371 3.629 16 O -0.460 6.460 17 C -0.109 4.109 18 C -0.376 4.376 19 S 0.385 5.615 20 C -0.299 4.299 21 N -0.071 5.071 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.197 0.803 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.678 6.381 -5.163 8.634 hybrid contribution 0.561 -0.004 1.046 1.187 sum -2.117 6.377 -4.116 7.880 Atomic orbital electron populations 1.22678 0.82217 1.02423 0.99062 1.88088 1.18623 1.27239 1.95174 1.22995 0.95112 0.85060 0.99734 1.21419 0.91379 0.99581 0.88073 1.48170 1.60263 1.10539 1.10765 1.19968 0.97122 0.71015 1.00432 1.21244 0.95109 0.91797 1.45818 0.93483 1.24723 0.96179 0.96626 0.95643 1.69930 1.31690 1.02172 1.49049 0.86831 0.85780 0.77565 0.78758 1.20548 1.21370 1.20638 1.17189 0.77860 0.85436 0.82451 1.90685 1.58811 1.14040 1.82512 1.20615 1.04857 0.88469 0.96937 1.26405 1.07079 1.05968 0.98124 1.82576 1.57758 0.99304 1.21904 1.28828 1.03612 1.04145 0.93316 1.67707 1.11948 1.11870 1.15611 0.94786 0.94696 0.89829 0.93180 0.93392 0.89456 0.89353 0.93907 0.91135 0.93154 0.80335 0.78670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -6.97 9.21 -35.23 -0.32 -7.30 16 3 C 0.05 0.83 6.28 37.16 0.23 1.06 16 4 C 0.12 2.29 5.84 -4.04 -0.02 2.27 16 5 N -0.57 -12.93 2.46 -176.39 -0.43 -13.36 16 6 C 0.23 5.97 4.51 -5.19 -0.02 5.95 16 7 C -0.50 -13.61 7.78 -34.44 -0.27 -13.88 16 8 H 0.05 1.33 7.81 -52.49 -0.41 0.92 16 9 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 10 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 11 Si 0.88 21.36 29.54 -169.99 -5.02 16.34 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.58 13.25 7.59 -12.59 -0.10 13.16 16 16 O -0.58 -13.31 16.28 5.25 0.09 -13.22 16 17 C 0.03 0.56 6.43 -84.53 -0.54 0.02 16 18 C -0.23 -4.03 10.62 29.65 0.31 -3.71 16 19 S 0.13 1.83 22.97 -107.50 -2.47 -0.64 16 20 C 0.00 0.03 12.17 51.43 0.63 0.66 16 21 N -0.36 -7.82 5.70 -12.36 -0.07 -7.89 16 22 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.09 1.68 8.11 -51.93 -0.42 1.26 16 28 H 0.09 1.59 7.36 -51.93 -0.38 1.21 16 29 H 0.04 1.18 6.84 -51.92 -0.35 0.83 16 30 H 0.07 1.91 5.58 -51.93 -0.29 1.62 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.18 2.78 8.03 -52.49 -0.42 2.36 16 33 H 0.20 2.98 8.06 -52.48 -0.42 2.55 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -31.85 299.26 -5.70 -37.55 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -3.95 Total: -0.41 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 1.24 Total: 8.91 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.23 Total: -45.74 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.24 Total: -20.52 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.47 Total: -0.64 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.85 -5.70 -37.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070798485.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.349 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds