Wall clock time and date at job start Mon Mar 30 2020 02:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99402 * 2 1 4 4 H 1.48501 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47199 * 299.99065 * 3 2 1 6 6 H 1.48497 * 109.47349 * 59.99731 * 3 2 1 7 7 C 1.37874 * 120.00655 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99946 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99666 * 0.02562 * 7 2 1 10 10 S 1.81395 * 109.46829 * 180.02562 * 9 7 2 11 11 C 1.76209 * 102.99772 * 180.02562 * 10 9 7 12 12 C 1.39092 * 119.95757 * 180.02562 * 11 10 9 13 13 C 1.37822 * 120.03649 * 180.02562 * 12 11 10 14 14 C 1.39429 * 119.96188 * 359.97438 * 13 12 11 15 15 C 1.48326 * 120.03996 * 180.02562 * 14 13 12 16 16 C 1.39372 * 120.12390 * 179.97438 * 15 14 13 17 17 C 1.38008 * 119.87485 * 180.02562 * 16 15 14 18 18 C 1.38333 * 120.12452 * 359.97438 * 17 16 15 19 19 C 1.38332 * 120.24838 * 0.28031 * 18 17 16 20 20 C 1.38008 * 120.12552 * 359.48374 * 19 18 17 21 21 C 1.39427 * 119.91903 * 0.27462 * 14 13 12 22 22 C 1.37826 * 119.95719 * 359.45060 * 21 14 13 23 23 H 0.96993 * 120.00194 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46756 * 59.99920 * 9 7 2 25 25 H 1.09000 * 109.47022 * 299.99953 * 9 7 2 26 26 H 1.07996 * 119.98090 * 359.97438 * 12 11 10 27 27 H 1.08006 * 120.01672 * 179.97438 * 13 12 11 28 28 H 1.07993 * 120.06285 * 359.97438 * 16 15 14 29 29 H 1.08003 * 119.93736 * 179.97438 * 17 16 15 30 30 H 1.08002 * 119.87185 * 179.97438 * 18 17 16 31 31 H 1.07994 * 119.93344 * 179.72414 * 19 18 17 32 32 H 1.07996 * 120.06208 * 180.23585 * 20 19 18 33 33 H 1.07999 * 120.02277 * 179.72702 * 21 14 13 34 34 H 1.07996 * 119.98316 * 180.27130 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0005 10 16 2.4301 -3.8778 0.0021 11 6 1.3828 -5.2948 0.0011 12 6 1.9391 -6.5696 0.0025 13 6 1.1215 -7.6791 0.0012 14 6 -0.2641 -7.5231 -0.0009 15 6 -1.1456 -8.7159 -0.0017 16 6 -2.5308 -8.5619 -0.0033 17 6 -3.3463 -9.6754 -0.0035 18 6 -2.7912 -10.9424 -0.0026 19 6 -1.4170 -11.1012 0.0042 20 6 -0.5919 -9.9950 -0.0005 21 6 -0.8199 -6.2444 -0.0075 22 6 0.0009 -5.1372 -0.0005 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5570 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 3.0123 -6.6901 0.0037 27 1 1.5538 -8.6689 0.0018 28 1 -2.9653 -7.5732 -0.0035 29 1 -4.4198 -9.5572 -0.0043 30 1 -3.4331 -11.8109 -0.0024 31 1 -0.9891 -12.0927 0.0093 32 1 0.4808 -10.1201 0.0011 33 1 -1.8928 -6.1216 -0.0136 34 1 -0.4292 -4.1465 -0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076515233.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:25 Heat of formation + Delta-G solvation = 34.522180 kcal Electronic energy + Delta-G solvation = -16387.005408 eV Core-core repulsion = 13760.997278 eV Total energy + Delta-G solvation = -2626.008130 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.077 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71379 -38.02085 -33.30042 -32.67210 -31.46727 -30.47644 -28.88526 -28.48449 -23.85390 -23.51508 -22.90838 -21.19338 -20.85865 -17.92913 -16.88205 -16.27195 -15.87923 -15.32244 -14.86416 -14.35148 -14.02330 -13.92296 -13.77077 -13.38606 -13.12738 -12.94493 -12.76094 -12.38849 -12.11646 -11.79949 -11.41518 -11.12343 -10.98613 -10.74854 -10.59360 -10.08420 -9.92303 -9.68522 -9.12433 -9.04367 -8.75167 -8.71085 -8.32282 -6.58188 -6.29334 -4.35035 0.73837 1.31694 1.67786 1.96966 2.44268 3.19844 3.27397 3.32831 3.61294 3.64682 4.18824 4.27637 4.67525 4.70979 4.85690 4.96501 5.08352 5.18220 5.20571 5.35633 5.36277 5.62984 5.80561 5.84439 5.93213 6.01357 6.26830 6.29074 6.35601 6.41583 6.60013 6.69069 6.85946 6.91535 6.92038 6.95205 7.15933 7.64074 7.86719 8.66536 9.29288 10.81957 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.042013 B = 0.003353 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.305594 B = 8349.593541 C = 9000.751427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.519 4.519 8 H 0.069 0.931 9 C 0.069 3.931 10 S -0.155 6.155 11 C -0.060 4.060 12 C -0.113 4.113 13 C -0.091 4.091 14 C -0.081 4.081 15 C -0.025 4.025 16 C -0.118 4.118 17 C -0.117 4.117 18 C -0.131 4.131 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.085 4.085 22 C -0.134 4.134 23 H 0.267 0.733 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.095 -18.734 -0.005 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.558 4.558 8 H 0.087 0.913 9 C -0.078 4.078 10 S 0.094 5.906 11 C -0.174 4.174 12 C -0.138 4.138 13 C -0.111 4.111 14 C -0.085 4.085 15 C -0.026 4.026 16 C -0.136 4.136 17 C -0.135 4.135 18 C -0.149 4.149 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.105 4.105 22 C -0.159 4.159 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.962 -18.363 -0.003 18.600 hybrid contribution -1.092 0.818 -0.001 1.364 sum -4.054 -17.545 -0.005 18.007 Atomic orbital electron populations 1.69948 1.06162 1.27487 1.49089 1.24959 0.95005 0.99365 0.94352 0.86267 0.80070 0.82327 0.77849 1.19352 1.20613 1.20618 1.20660 0.93518 0.88529 1.53103 0.91268 1.21402 0.94464 0.91036 1.00877 1.85420 1.17891 0.97974 1.89328 1.22273 0.96832 0.98164 1.00155 1.20685 0.99634 0.90518 1.02959 1.21014 0.92415 0.98165 0.99513 1.18624 0.92749 0.91949 1.05160 1.18857 0.92841 0.92426 0.98433 1.21295 0.92800 0.99123 1.00368 1.21080 0.99702 0.92534 1.00140 1.21154 0.95147 0.97215 1.01415 1.21059 0.93703 0.98469 1.00340 1.21247 0.99987 0.91725 1.00719 1.21081 0.99455 0.91355 0.98611 1.21359 0.92388 0.99797 1.02308 0.92360 0.93734 0.93738 0.85674 0.85929 0.85658 0.86078 0.86343 0.86145 0.85777 0.85914 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.23 9.13 -34.44 -0.31 -14.55 16 8 H 0.07 1.89 7.71 -52.49 -0.40 1.48 16 9 C 0.07 1.74 4.09 36.01 0.15 1.89 16 10 S -0.16 -3.36 21.84 -107.50 -2.35 -5.70 16 11 C -0.06 -1.14 6.12 -38.95 -0.24 -1.38 16 12 C -0.11 -1.83 9.78 -39.42 -0.39 -2.21 16 13 C -0.09 -1.29 9.42 -39.29 -0.37 -1.66 16 14 C -0.08 -1.19 5.88 -104.86 -0.62 -1.80 16 15 C -0.03 -0.33 5.88 -104.90 -0.62 -0.94 16 16 C -0.12 -1.38 9.43 -39.24 -0.37 -1.75 16 17 C -0.12 -1.18 10.03 -39.63 -0.40 -1.57 16 18 C -0.13 -1.24 10.04 -39.51 -0.40 -1.63 16 19 C -0.12 -1.14 10.03 -39.63 -0.40 -1.54 16 20 C -0.12 -1.33 9.43 -39.24 -0.37 -1.70 16 21 C -0.09 -1.33 9.42 -39.29 -0.37 -1.70 16 22 C -0.13 -2.46 9.35 -39.42 -0.37 -2.83 16 23 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.04 1.17 7.74 -51.92 -0.40 0.77 16 25 H 0.04 1.17 7.74 -51.92 -0.40 0.77 16 26 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.12 1.37 6.20 -52.48 -0.33 1.05 16 28 H 0.13 1.35 6.20 -52.49 -0.33 1.02 16 29 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 30 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.12 1.19 6.20 -52.49 -0.33 0.86 16 33 H 0.12 1.64 6.20 -52.49 -0.33 1.31 16 34 H 0.13 2.63 5.86 -52.49 -0.31 2.32 16 LS Contribution 303.84 15.07 4.58 4.58 Total: -1.00 -29.01 303.84 -10.86 -39.86 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -3.64 Total: 1.50 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: -5.16 Total: -31.63 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.74 Total: -24.47 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -2.35 Total: -5.70 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.01 -10.86 -39.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076515233.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.386 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds