Wall clock time and date at job start Mon Mar 30 2020 02:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99402 * 2 1 4 4 H 1.48501 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47199 * 299.99065 * 3 2 1 6 6 H 1.48497 * 109.47349 * 59.99731 * 3 2 1 7 7 C 1.37874 * 120.00655 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99946 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99666 * 0.02562 * 7 2 1 10 10 S 1.81395 * 109.46829 * 180.02562 * 9 7 2 11 11 C 1.76209 * 102.99772 * 180.02562 * 10 9 7 12 12 C 1.39092 * 119.95757 * 180.02562 * 11 10 9 13 13 C 1.37822 * 120.03649 * 180.02562 * 12 11 10 14 14 C 1.39429 * 119.96188 * 359.97438 * 13 12 11 15 15 C 1.48326 * 120.03996 * 180.02562 * 14 13 12 16 16 C 1.39372 * 120.12390 * 179.97438 * 15 14 13 17 17 C 1.38008 * 119.87485 * 180.02562 * 16 15 14 18 18 C 1.38333 * 120.12452 * 359.97438 * 17 16 15 19 19 C 1.38332 * 120.24838 * 0.28031 * 18 17 16 20 20 C 1.38008 * 120.12552 * 359.48374 * 19 18 17 21 21 C 1.39427 * 119.91903 * 0.27462 * 14 13 12 22 22 C 1.37826 * 119.95719 * 359.45060 * 21 14 13 23 23 H 0.96993 * 120.00194 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46756 * 59.99920 * 9 7 2 25 25 H 1.09000 * 109.47022 * 299.99953 * 9 7 2 26 26 H 1.07996 * 119.98090 * 359.97438 * 12 11 10 27 27 H 1.08006 * 120.01672 * 179.97438 * 13 12 11 28 28 H 1.07993 * 120.06285 * 359.97438 * 16 15 14 29 29 H 1.08003 * 119.93736 * 179.97438 * 17 16 15 30 30 H 1.08002 * 119.87185 * 179.97438 * 18 17 16 31 31 H 1.07994 * 119.93344 * 179.72414 * 19 18 17 32 32 H 1.07996 * 120.06208 * 180.23585 * 20 19 18 33 33 H 1.07999 * 120.02277 * 179.72702 * 21 14 13 34 34 H 1.07996 * 119.98316 * 180.27130 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0005 10 16 2.4301 -3.8778 0.0021 11 6 1.3828 -5.2948 0.0011 12 6 1.9391 -6.5696 0.0025 13 6 1.1215 -7.6791 0.0012 14 6 -0.2641 -7.5231 -0.0009 15 6 -1.1456 -8.7159 -0.0017 16 6 -2.5308 -8.5619 -0.0033 17 6 -3.3463 -9.6754 -0.0035 18 6 -2.7912 -10.9424 -0.0026 19 6 -1.4170 -11.1012 0.0042 20 6 -0.5919 -9.9950 -0.0005 21 6 -0.8199 -6.2444 -0.0075 22 6 0.0009 -5.1372 -0.0005 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5570 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 3.0123 -6.6901 0.0037 27 1 1.5538 -8.6689 0.0018 28 1 -2.9653 -7.5732 -0.0035 29 1 -4.4198 -9.5572 -0.0043 30 1 -3.4331 -11.8109 -0.0024 31 1 -0.9891 -12.0927 0.0093 32 1 0.4808 -10.1201 0.0011 33 1 -1.8928 -6.1216 -0.0136 34 1 -0.4292 -4.1465 -0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076515233.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:24 Heat of formation + Delta-G solvation = 21.806062 kcal Electronic energy + Delta-G solvation = -16387.556820 eV Core-core repulsion = 13760.997278 eV Total energy + Delta-G solvation = -2626.559542 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.077 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.73578 -39.08254 -35.38864 -33.74122 -32.53557 -31.55333 -30.67970 -29.76170 -25.56297 -24.60752 -24.24827 -22.28515 -21.90122 -19.28811 -18.44920 -17.79977 -16.87759 -16.78417 -16.31515 -15.63010 -15.17579 -15.06727 -14.82250 -14.80692 -14.58096 -14.30188 -14.24923 -13.90718 -13.39901 -13.20856 -12.79500 -12.57203 -12.45806 -12.13766 -11.78894 -11.64131 -11.59056 -11.14190 -10.96657 -10.76452 -10.01656 -9.82780 -9.45929 -8.38660 -8.16478 -6.53454 -0.32936 0.38667 0.53121 0.82156 0.89653 1.38835 1.39129 1.53759 1.79880 2.33458 2.60749 2.96404 3.13097 3.66010 3.72959 3.92397 4.14048 4.16204 4.29164 4.37837 4.40566 4.57326 4.74108 4.76988 4.81733 4.84167 4.97676 5.00597 5.19340 5.29045 5.31022 5.36744 5.51080 5.60029 5.64191 5.78386 5.80435 5.90995 6.12459 6.54058 7.15689 8.73810 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.042013 B = 0.003353 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.305594 B = 8349.593541 C = 9000.751427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.017 3.983 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.079 3.921 10 S -0.162 6.162 11 C -0.090 4.090 12 C -0.108 4.108 13 C -0.087 4.087 14 C -0.065 4.065 15 C -0.057 4.057 16 C -0.131 4.131 17 C -0.125 4.125 18 C -0.125 4.125 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.094 4.094 22 C -0.150 4.150 23 H 0.272 0.728 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.143 0.857 27 H 0.162 0.838 28 H 0.125 0.875 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.068 -21.524 -0.005 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.069 4.069 10 S 0.085 5.915 11 C -0.203 4.203 12 C -0.132 4.132 13 C -0.107 4.107 14 C -0.068 4.068 15 C -0.057 4.057 16 C -0.149 4.149 17 C -0.142 4.142 18 C -0.143 4.143 19 C -0.139 4.139 20 C -0.139 4.139 21 C -0.114 4.114 22 C -0.174 4.174 23 H 0.081 0.919 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.161 0.839 27 H 0.179 0.821 28 H 0.143 0.857 29 H 0.159 0.841 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.957 -21.192 -0.003 21.397 hybrid contribution -1.274 1.360 -0.002 1.863 sum -4.232 -19.832 -0.004 20.279 Atomic orbital electron populations 1.70060 1.07752 1.28722 1.49550 1.25937 0.95908 1.03148 0.93489 0.85180 0.78807 0.77499 0.78279 1.18699 1.19698 1.19708 1.20998 0.93612 0.89897 1.53626 0.91522 1.20995 0.94688 0.92715 0.98471 1.85046 1.17394 0.98102 1.90987 1.22225 0.96515 0.97833 1.03762 1.20931 1.00870 0.89642 1.01728 1.21405 0.92035 0.99170 0.98052 1.18954 0.93545 0.92185 1.02139 1.18876 0.93057 0.92357 1.01405 1.21473 0.92854 0.99984 1.00549 1.21385 1.00755 0.92406 0.99695 1.21592 0.95674 0.97845 0.99196 1.21439 0.93818 0.99342 0.99302 1.21506 1.01179 0.91307 0.99904 1.21254 1.00140 0.91217 0.98747 1.21238 0.92799 0.99575 1.03775 0.91911 0.96167 0.96176 0.83931 0.82088 0.85718 0.84057 0.83548 0.83328 0.84187 0.84276 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.20 13.29 21.45 0.28 -53.91 16 2 C 0.02 0.93 5.46 84.65 0.46 1.39 16 3 Si 0.98 43.44 29.54 68.60 2.03 45.47 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.54 -31.06 9.13 25.60 0.23 -30.83 16 8 H 0.07 3.76 7.71 -2.91 -0.02 3.74 16 9 C 0.08 4.26 4.09 71.24 0.29 4.55 16 10 S -0.16 -7.35 21.84 -56.49 -1.23 -8.58 16 11 C -0.09 -3.53 6.12 22.68 0.14 -3.39 16 12 C -0.11 -3.38 9.78 22.38 0.22 -3.16 16 13 C -0.09 -2.28 9.42 22.46 0.21 -2.07 16 14 C -0.07 -1.82 5.88 -20.02 -0.12 -1.94 16 15 C -0.06 -1.34 5.88 -20.04 -0.12 -1.46 16 16 C -0.13 -2.84 9.43 22.49 0.21 -2.63 16 17 C -0.12 -2.16 10.03 22.24 0.22 -1.93 16 18 C -0.13 -1.86 10.04 22.31 0.22 -1.63 16 19 C -0.12 -1.84 10.03 22.24 0.22 -1.62 16 20 C -0.12 -2.28 9.43 22.49 0.21 -2.07 16 21 C -0.09 -3.00 9.42 22.46 0.21 -2.79 16 22 C -0.15 -5.83 9.35 22.38 0.21 -5.62 16 23 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 24 H 0.02 1.15 7.74 -2.39 -0.02 1.13 16 25 H 0.02 1.15 7.74 -2.39 -0.02 1.13 16 26 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 27 H 0.16 2.94 6.20 -2.91 -0.02 2.93 16 28 H 0.12 2.60 6.20 -2.91 -0.02 2.58 16 29 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.14 2.08 6.20 -2.91 -0.02 2.06 16 33 H 0.14 3.82 6.20 -2.91 -0.02 3.80 16 34 H 0.11 4.67 5.86 -2.91 -0.02 4.65 16 Total: -1.00 -65.25 303.84 5.02 -60.22 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.11 Total: 12.00 kcal Atomic # 6 Polarization: -58.04 SS G_CDS: 2.84 Total: -55.20 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.28 Total: -53.91 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -1.23 Total: -8.58 kcal Total: -65.25 5.02 -60.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076515233.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.030 kcal (2) G-P(sol) polarization free energy of solvation -65.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds