Wall clock time and date at job start Mon Mar 30 2020 01:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 116.99885 * 2 1 4 4 O 1.20831 * 119.99856 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00151 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.46978 * 180.02562 * 5 3 2 7 7 C 1.36934 * 120.00047 * 264.00713 * 6 5 3 8 8 H 1.08003 * 120.00573 * 196.22994 * 7 6 5 9 9 C 1.38824 * 119.99913 * 16.22788 * 7 6 5 10 10 N 1.31616 * 119.99545 * 22.11781 * 9 7 6 11 11 Si 1.86802 * 119.99987 * 202.12284 * 9 7 6 12 12 H 1.48499 * 109.46911 * 59.99963 * 11 9 7 13 13 H 1.48501 * 109.46810 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47077 * 299.99715 * 11 9 7 15 15 C 1.46495 * 120.00195 * 84.01490 * 6 5 3 16 16 C 1.50695 * 109.47838 * 89.99474 * 15 6 5 17 17 N 1.29033 * 124.91809 * 89.99588 * 16 15 6 18 18 C 1.31782 * 117.12575 * 180.02562 * 17 16 15 19 19 C 1.50699 * 122.74571 * 179.97438 * 18 17 16 20 20 C 1.33637 * 114.50009 * 0.23067 * 18 17 16 21 21 S 1.70978 * 124.91822 * 270.00549 * 16 15 6 22 22 H 1.09000 * 109.47532 * 59.99897 * 1 2 3 23 23 H 1.09004 * 109.47275 * 179.97438 * 1 2 3 24 24 H 1.09010 * 109.47363 * 299.99464 * 1 2 3 25 25 H 1.08999 * 109.46652 * 60.00304 * 5 3 2 26 26 H 1.09006 * 109.47096 * 300.00471 * 5 3 2 27 27 H 0.97000 * 119.99756 * 179.97438 * 10 9 7 28 28 H 1.09004 * 109.47098 * 329.99224 * 15 6 5 29 29 H 1.09004 * 109.47329 * 209.99659 * 15 6 5 30 30 H 1.08998 * 109.47352 * 90.02687 * 19 18 17 31 31 H 1.08997 * 109.47312 * 330.02054 * 19 18 17 32 32 H 1.09003 * 109.46787 * 210.02147 * 19 18 17 33 33 H 1.07999 * 126.03637 * 179.76926 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9815 2.6798 0.0011 7 6 4.2948 3.3016 -1.1780 8 1 4.8430 4.2322 -1.1690 9 6 3.9078 2.7359 -2.3853 10 7 2.9058 1.8832 -2.4211 11 14 4.8091 3.1848 -3.9587 12 1 6.2415 2.8141 -3.8315 13 1 4.2076 2.4502 -5.1005 14 1 4.6951 4.6465 -4.1946 15 6 4.0618 3.4195 1.2630 16 6 5.4443 3.2726 1.8445 17 7 6.4348 4.0636 1.6036 18 6 7.5799 3.7903 2.1958 19 6 8.8174 4.6286 2.0040 20 6 7.5552 2.7056 2.9761 21 16 5.9275 2.0333 2.9188 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 3.9563 0.7807 -0.8892 26 1 3.9557 0.7810 0.8908 27 1 2.6352 1.4882 -3.2647 28 1 3.3284 3.0218 1.9646 29 1 3.8549 4.4740 1.0800 30 1 8.8428 5.4165 2.7568 31 1 8.8027 5.0760 1.0102 32 1 9.7017 3.9997 2.1064 33 1 8.3857 2.3119 3.5432 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088603510.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:46 Heat of formation + Delta-G solvation = -12.944441 kcal Electronic energy + Delta-G solvation = -18787.458182 eV Core-core repulsion = 15748.542482 eV Total energy + Delta-G solvation = -3038.915700 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.37302 -39.00218 -36.14200 -34.68580 -32.35327 -30.92388 -28.56321 -27.44515 -26.78877 -25.99966 -23.20865 -21.36593 -19.90767 -19.02264 -17.35134 -16.80935 -16.35391 -15.61443 -15.24958 -14.92009 -14.73623 -14.33407 -13.72392 -13.52608 -13.17011 -12.85999 -12.44933 -12.37440 -12.14738 -12.07927 -11.42835 -11.19041 -11.01755 -10.95443 -10.81778 -10.54717 -10.17898 -10.02669 -9.69485 -9.37173 -9.07151 -8.93492 -8.60460 -8.27158 -7.20961 -5.97448 -3.31487 1.18713 1.86338 2.23916 3.24836 3.37124 3.42040 3.45549 3.76075 3.95610 4.43909 4.59874 5.22002 5.30689 5.36984 5.48112 5.63477 5.73312 5.75657 5.81299 5.89693 5.98154 6.04393 6.19880 6.24994 6.42937 6.61896 6.66343 6.92977 7.62706 7.74448 8.07475 8.32011 8.95301 9.27696 9.60599 10.01413 11.13650 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.007739 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.054612 B = 3617.122987 C = 5012.956055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.381 6.381 3 C 0.466 3.534 4 O -0.504 6.504 5 C 0.185 3.815 6 N -0.549 5.549 7 C -0.256 4.256 8 H 0.086 0.914 9 C 0.005 3.995 10 N -0.903 5.903 11 Si 0.912 3.088 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.281 1.281 15 C 0.212 3.788 16 C 0.080 3.920 17 N -0.471 5.471 18 C 0.070 3.930 19 C -0.076 4.076 20 C -0.284 4.284 21 S 0.079 5.921 22 H 0.054 0.946 23 H 0.081 0.919 24 H 0.046 0.954 25 H 0.118 0.882 26 H 0.052 0.948 27 H 0.259 0.741 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.886 -2.544 9.826 11.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.299 6.299 3 C 0.306 3.694 4 O -0.389 6.389 5 C 0.056 3.944 6 N -0.267 5.267 7 C -0.385 4.385 8 H 0.103 0.897 9 C -0.193 4.193 10 N -0.547 5.547 11 Si 0.741 3.259 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.080 3.920 16 C -0.202 4.202 17 N -0.186 5.186 18 C -0.063 4.063 19 C -0.135 4.135 20 C -0.423 4.423 21 S 0.334 5.666 22 H 0.072 0.928 23 H 0.100 0.900 24 H 0.065 0.935 25 H 0.135 0.865 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.963 -2.715 9.747 10.866 hybrid contribution 0.870 0.638 -1.146 1.575 sum 4.833 -2.076 8.600 10.081 Atomic orbital electron populations 1.22881 0.79566 1.01453 1.01365 1.86532 1.21148 1.36483 1.85689 1.25353 0.93353 0.80298 0.70428 1.90478 1.66639 1.36418 1.45316 1.20331 0.85736 0.86451 1.01885 1.43866 1.73899 1.07118 1.01847 1.19305 1.29374 1.07539 0.82242 0.89671 1.24850 0.96613 0.99797 0.98066 1.69862 1.24732 1.33933 1.26151 0.86202 0.79509 0.78030 0.82119 1.20933 1.21655 1.20755 1.19484 0.85101 0.99145 0.88235 1.29223 1.02145 0.92610 0.96245 1.66146 0.98873 1.30212 1.23348 1.20347 0.94718 0.95512 0.95707 1.20305 0.91858 0.98228 1.03152 1.26560 1.01272 1.03121 1.11372 1.83871 1.04711 1.33334 1.44683 0.92758 0.90016 0.93511 0.86467 0.93048 0.93078 0.91674 0.89383 0.91135 0.90651 0.91275 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.56 101.05 1.07 1.80 16 2 O -0.38 -8.10 10.57 -39.27 -0.41 -8.51 16 3 C 0.47 11.13 6.17 36.00 0.22 11.35 16 4 O -0.50 -13.48 15.88 -18.75 -0.30 -13.77 16 5 C 0.19 4.26 5.48 -5.20 -0.03 4.23 16 6 N -0.55 -13.26 2.01 -175.98 -0.35 -13.62 16 7 C -0.26 -6.87 9.66 -15.06 -0.15 -7.01 16 8 H 0.09 2.32 7.92 -52.48 -0.42 1.90 16 9 C 0.00 0.13 4.86 -17.43 -0.08 0.05 16 10 N -0.90 -25.25 9.31 55.49 0.52 -24.74 16 11 Si 0.91 21.78 29.61 -169.99 -5.03 16.74 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.21 4.40 6.21 -5.20 -0.03 4.37 16 16 C 0.08 1.53 6.97 -13.46 -0.09 1.44 16 17 N -0.47 -9.24 10.53 -8.06 -0.08 -9.33 16 18 C 0.07 1.14 6.74 -84.23 -0.57 0.58 16 19 C -0.08 -0.95 10.31 36.00 0.37 -0.58 16 20 C -0.28 -4.16 11.13 29.12 0.32 -3.84 16 21 S 0.08 1.25 23.18 -107.50 -2.49 -1.25 16 22 H 0.05 1.01 8.13 -51.93 -0.42 0.58 16 23 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.12 2.93 6.35 -51.93 -0.33 2.60 16 26 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 29 H 0.09 1.89 8.04 -51.93 -0.42 1.47 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 33 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 304.20 15.07 4.58 4.58 Total: -1.00 -31.64 304.20 -6.64 -38.28 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.10 Total: -0.77 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 1.03 Total: 12.38 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.08 Total: -47.69 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.71 Total: -22.28 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.49 Total: -1.25 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.64 -6.64 -38.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088603510.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.332 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds