Wall clock time and date at job start Mon Mar 30 2020 01:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 116.99885 * 2 1 4 4 O 1.20831 * 119.99856 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00151 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.46978 * 180.02562 * 5 3 2 7 7 C 1.36934 * 120.00047 * 264.00713 * 6 5 3 8 8 H 1.08003 * 120.00573 * 196.22994 * 7 6 5 9 9 C 1.38824 * 119.99913 * 16.22788 * 7 6 5 10 10 N 1.31616 * 119.99545 * 22.11781 * 9 7 6 11 11 Si 1.86802 * 119.99987 * 202.12284 * 9 7 6 12 12 H 1.48499 * 109.46911 * 59.99963 * 11 9 7 13 13 H 1.48501 * 109.46810 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47077 * 299.99715 * 11 9 7 15 15 C 1.46495 * 120.00195 * 84.01490 * 6 5 3 16 16 C 1.50695 * 109.47838 * 89.99474 * 15 6 5 17 17 N 1.29033 * 124.91809 * 89.99588 * 16 15 6 18 18 C 1.31782 * 117.12575 * 180.02562 * 17 16 15 19 19 C 1.50699 * 122.74571 * 179.97438 * 18 17 16 20 20 C 1.33637 * 114.50009 * 0.23067 * 18 17 16 21 21 S 1.70978 * 124.91822 * 270.00549 * 16 15 6 22 22 H 1.09000 * 109.47532 * 59.99897 * 1 2 3 23 23 H 1.09004 * 109.47275 * 179.97438 * 1 2 3 24 24 H 1.09010 * 109.47363 * 299.99464 * 1 2 3 25 25 H 1.08999 * 109.46652 * 60.00304 * 5 3 2 26 26 H 1.09006 * 109.47096 * 300.00471 * 5 3 2 27 27 H 0.97000 * 119.99756 * 179.97438 * 10 9 7 28 28 H 1.09004 * 109.47098 * 329.99224 * 15 6 5 29 29 H 1.09004 * 109.47329 * 209.99659 * 15 6 5 30 30 H 1.08998 * 109.47352 * 90.02687 * 19 18 17 31 31 H 1.08997 * 109.47312 * 330.02054 * 19 18 17 32 32 H 1.09003 * 109.46787 * 210.02147 * 19 18 17 33 33 H 1.07999 * 126.03637 * 179.76926 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9815 2.6798 0.0011 7 6 4.2948 3.3016 -1.1780 8 1 4.8430 4.2322 -1.1690 9 6 3.9078 2.7359 -2.3853 10 7 2.9058 1.8832 -2.4211 11 14 4.8091 3.1848 -3.9587 12 1 6.2415 2.8141 -3.8315 13 1 4.2076 2.4502 -5.1005 14 1 4.6951 4.6465 -4.1946 15 6 4.0618 3.4195 1.2630 16 6 5.4443 3.2726 1.8445 17 7 6.4348 4.0636 1.6036 18 6 7.5799 3.7903 2.1958 19 6 8.8174 4.6286 2.0040 20 6 7.5552 2.7056 2.9761 21 16 5.9275 2.0333 2.9188 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 3.9563 0.7807 -0.8892 26 1 3.9557 0.7810 0.8908 27 1 2.6352 1.4882 -3.2647 28 1 3.3284 3.0218 1.9646 29 1 3.8549 4.4740 1.0800 30 1 8.8428 5.4165 2.7568 31 1 8.8027 5.0760 1.0102 32 1 9.7017 3.9997 2.1064 33 1 8.3857 2.3119 3.5432 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088603510.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:46 Heat of formation + Delta-G solvation = -32.462420 kcal Electronic energy + Delta-G solvation = -18788.304546 eV Core-core repulsion = 15748.542482 eV Total energy + Delta-G solvation = -3039.762063 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.90149 -40.59369 -37.90070 -36.52741 -34.01818 -32.52044 -30.19203 -28.81655 -28.20702 -27.68067 -24.89261 -22.96191 -21.65690 -20.36838 -18.98988 -18.41873 -18.13867 -17.38883 -16.97220 -16.64494 -16.07517 -15.87803 -15.51139 -15.08113 -14.50199 -14.31176 -13.99828 -13.86788 -13.42247 -13.27663 -13.20433 -12.83775 -12.72985 -12.60075 -12.38512 -12.14142 -12.05922 -12.00513 -11.40802 -11.22353 -10.65617 -10.42017 -10.22367 -9.52775 -9.11204 -8.01292 -5.36048 -0.11181 0.59727 0.95591 1.45297 1.47008 1.54538 1.90099 1.95753 2.29907 2.51517 3.15368 3.37082 3.50311 4.19790 4.35734 4.37689 4.39351 4.45026 4.49012 4.51091 4.65705 4.77701 4.82196 4.92344 4.93763 5.05171 5.08505 5.47945 5.61185 5.88644 6.13371 6.93926 7.04178 7.42203 7.66927 8.04166 9.07368 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.007739 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.054612 B = 3617.122987 C = 5012.956055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.383 6.383 3 C 0.468 3.532 4 O -0.540 6.540 5 C 0.188 3.812 6 N -0.564 5.564 7 C -0.258 4.258 8 H 0.072 0.928 9 C -0.040 4.040 10 N -0.924 5.924 11 Si 0.968 3.032 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.283 1.283 15 C 0.218 3.782 16 C 0.041 3.959 17 N -0.501 5.501 18 C 0.041 3.959 19 C -0.072 4.072 20 C -0.265 4.265 21 S 0.128 5.872 22 H 0.035 0.965 23 H 0.127 0.873 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.253 0.747 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.366 -3.699 11.274 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.300 6.300 3 C 0.310 3.690 4 O -0.428 6.428 5 C 0.059 3.941 6 N -0.283 5.283 7 C -0.388 4.388 8 H 0.090 0.910 9 C -0.236 4.236 10 N -0.569 5.569 11 Si 0.797 3.203 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.210 1.210 15 C 0.088 3.912 16 C -0.240 4.240 17 N -0.218 5.218 18 C -0.091 4.091 19 C -0.132 4.132 20 C -0.404 4.404 21 S 0.382 5.618 22 H 0.054 0.946 23 H 0.145 0.855 24 H 0.074 0.926 25 H 0.114 0.886 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.453 -3.877 11.224 13.067 hybrid contribution 0.425 0.957 -1.444 1.784 sum 5.878 -2.921 9.780 11.778 Atomic orbital electron populations 1.23205 0.77162 1.04343 1.00925 1.86490 1.23468 1.34961 1.85081 1.25472 0.93755 0.80393 0.69374 1.90454 1.67490 1.37703 1.47145 1.20303 0.85417 0.86095 1.02245 1.43942 1.74556 1.07660 1.02188 1.19360 1.28588 1.07158 0.83671 0.91044 1.25461 0.97340 1.00432 1.00342 1.69994 1.25801 1.35094 1.26050 0.85325 0.78463 0.77393 0.79127 1.20570 1.21763 1.20954 1.19363 0.86862 0.97696 0.87314 1.28438 1.01386 0.95166 0.98975 1.66131 1.00064 1.31298 1.24263 1.20891 0.94857 0.97018 0.96355 1.20400 0.91241 0.98698 1.02823 1.27090 1.01616 1.01734 1.09961 1.83577 1.05103 1.30811 1.42328 0.94592 0.85454 0.92616 0.88551 0.89864 0.93798 0.90552 0.91525 0.89567 0.92107 0.88469 0.77688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.25 10.56 113.37 1.20 2.44 16 2 O -0.38 -15.97 10.57 -51.45 -0.54 -16.52 16 3 C 0.47 22.48 6.17 71.24 0.44 22.92 16 4 O -0.54 -29.38 15.88 21.95 0.35 -29.03 16 5 C 0.19 8.70 5.48 85.63 0.47 9.17 16 6 N -0.56 -27.73 2.01 -710.69 -1.43 -29.16 16 7 C -0.26 -14.20 9.66 84.04 0.81 -13.38 16 8 H 0.07 4.03 7.92 -2.91 -0.02 4.01 16 9 C -0.04 -2.22 4.86 84.87 0.41 -1.80 16 10 N -0.92 -52.70 9.31 21.65 0.20 -52.50 16 11 Si 0.97 45.59 29.61 68.60 2.03 47.62 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 14 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 15 C 0.22 9.23 6.21 85.63 0.53 9.76 16 16 C 0.04 1.55 6.97 88.52 0.62 2.16 16 17 N -0.50 -19.48 10.53 -179.40 -1.89 -21.37 16 18 C 0.04 1.24 6.74 41.52 0.28 1.52 16 19 C -0.07 -1.64 10.31 71.24 0.73 -0.91 16 20 C -0.27 -6.82 11.13 66.78 0.74 -6.08 16 21 S 0.13 3.69 23.18 -56.49 -1.31 2.38 16 22 H 0.04 1.32 8.13 -2.39 -0.02 1.30 16 23 H 0.13 3.02 8.14 -2.38 -0.02 3.00 16 24 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.10 4.88 6.35 -2.39 -0.02 4.86 16 26 H 0.08 3.22 8.12 -2.38 -0.02 3.20 16 27 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.08 2.96 8.07 -2.38 -0.02 2.94 16 29 H 0.07 3.01 8.04 -2.38 -0.02 2.99 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.10 1.62 8.12 -2.39 -0.02 1.60 16 33 H 0.21 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -69.47 304.20 4.76 -64.71 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.11 Total: 8.06 kcal Atomic # 6 Polarization: 19.57 SS G_CDS: 6.24 Total: 25.80 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -3.12 Total: -103.02 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -0.19 Total: -45.55 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.31 Total: 2.38 kcal Total: -69.47 4.76 -64.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088603510.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.248 kcal (2) G-P(sol) polarization free energy of solvation -69.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds