Wall clock time and date at job start Mon Mar 30 2020 01:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38596 * 120.79970 * 2 1 4 4 N 1.32333 * 119.10260 * 180.02562 * 3 2 1 5 5 C 1.31794 * 120.81891 * 359.97438 * 4 3 2 6 6 S 1.76200 * 119.12155 * 179.97438 * 5 4 3 7 7 O 1.42096 * 104.27807 * 206.07557 * 6 5 4 8 8 O 1.42104 * 104.27777 * 333.93529 * 6 5 4 9 9 C 1.81399 * 104.44996 * 90.00125 * 6 5 4 10 10 C 1.52998 * 109.47417 * 179.97438 * 9 6 5 11 11 C 1.53005 * 109.47038 * 180.02562 * 10 9 6 12 12 C 1.50700 * 109.46570 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00757 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99662 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99980 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00145 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46896 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47166 * 119.99518 * 16 14 12 19 19 H 1.48494 * 109.47136 * 239.99695 * 16 14 12 20 20 N 1.31794 * 121.75681 * 0.02562 * 5 4 3 21 21 C 1.32338 * 120.81727 * 359.97438 * 20 5 4 22 22 H 1.08996 * 109.46709 * 269.97476 * 1 2 3 23 23 H 1.08994 * 109.47421 * 29.97797 * 1 2 3 24 24 H 1.09006 * 109.46880 * 149.97746 * 1 2 3 25 25 H 1.08003 * 120.44608 * 0.04351 * 3 2 1 26 26 H 1.08998 * 109.47228 * 300.00429 * 9 6 5 27 27 H 1.08998 * 109.46915 * 59.99723 * 9 6 5 28 28 H 1.08999 * 109.46848 * 300.00278 * 10 9 6 29 29 H 1.09004 * 109.46856 * 60.00273 * 10 9 6 30 30 H 1.09003 * 109.46495 * 299.99519 * 11 10 9 31 31 H 1.08987 * 109.47252 * 60.00108 * 11 10 9 32 32 H 0.97001 * 119.99991 * 180.02562 * 15 14 12 33 33 H 1.07992 * 120.44490 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5395 1.1513 -0.0005 5 6 4.1809 0.0000 -0.0005 6 16 5.9429 0.0000 -0.0019 7 8 6.2928 -1.2372 -0.6069 8 8 6.2928 1.2368 -0.6078 9 6 6.3969 0.0007 1.7543 10 6 7.9211 0.0001 1.8871 11 6 8.3040 0.0001 3.3685 12 6 9.8053 0.0001 3.4992 13 1 10.4245 -0.0002 2.6143 14 6 10.3885 -0.0004 4.7486 15 7 9.6346 -0.0005 5.8261 16 14 12.2495 -0.0010 4.9107 17 1 12.8641 -0.0002 3.5588 18 1 12.6822 1.2112 5.6513 19 1 12.6814 -1.2138 5.6507 20 7 3.5395 -1.1514 -0.0005 21 6 2.2167 -1.1905 0.0000 22 1 -0.3632 -0.0005 1.0277 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6972 2.1373 0.0007 26 1 5.9903 0.8908 2.2344 27 1 5.9903 -0.8891 2.2351 28 1 8.3272 -0.8903 1.4072 29 1 8.3280 0.8897 1.4063 30 1 7.8978 0.8904 3.8487 31 1 7.8971 -0.8896 3.8489 32 1 10.0449 -0.0005 6.7051 33 1 1.6973 -2.1373 0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091574679.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:02 Heat of formation + Delta-G solvation = -64.358028 kcal Electronic energy + Delta-G solvation = -17832.007843 eV Core-core repulsion = 14790.862682 eV Total energy + Delta-G solvation = -3041.145161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.23743 -38.30488 -37.18863 -36.50400 -35.05193 -35.02927 -34.18758 -29.75136 -29.04358 -25.95472 -25.69069 -24.38667 -22.39221 -20.66163 -19.25381 -19.16352 -18.58156 -17.36974 -17.02385 -16.52093 -16.29905 -16.12202 -15.78637 -15.59372 -14.70559 -14.50529 -14.14136 -13.96449 -13.58122 -13.30833 -13.25377 -13.24082 -13.20195 -13.00102 -12.77277 -12.63552 -12.21809 -12.18176 -11.89076 -11.75650 -11.36251 -11.09179 -10.62461 -10.62428 -10.56261 -8.21075 -6.31698 -1.24086 -0.76672 -0.11341 1.41927 1.42591 1.56050 1.58158 2.15561 2.41975 2.52787 2.72959 3.12937 3.35474 3.39919 3.48779 3.65528 3.68597 3.74838 3.92427 4.35169 4.55043 4.64465 4.77103 4.85320 4.91054 4.95672 5.05098 5.29162 5.47398 5.60173 5.63389 5.80859 6.20622 6.47139 6.83936 7.37547 8.90837 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.036425 B = 0.003772 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.521700 B = 7421.803606 C = 7729.822094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.116 4.116 3 C 0.110 3.890 4 N -0.460 5.460 5 C -0.247 4.247 6 S 2.524 3.476 7 O -0.943 6.943 8 O -0.943 6.943 9 C -0.570 4.570 10 C -0.108 4.108 11 C 0.030 3.970 12 C -0.549 4.549 13 H 0.063 0.937 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.964 3.036 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.277 1.277 20 N -0.460 5.460 21 C 0.110 3.890 22 H 0.102 0.898 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.216 0.784 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.005 0.995 31 H 0.005 0.995 32 H 0.265 0.735 33 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.222 0.000 -10.556 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.120 4.120 3 C -0.058 4.058 4 N -0.174 5.174 5 C -0.596 4.596 6 S 2.701 3.299 7 O -0.940 6.940 8 O -0.940 6.940 9 C -0.703 4.703 10 C -0.147 4.147 11 C -0.008 4.008 12 C -0.587 4.587 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.789 3.211 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.203 1.203 20 N -0.174 5.174 21 C -0.058 4.058 22 H 0.120 0.880 23 H 0.115 0.885 24 H 0.115 0.885 25 H 0.232 0.768 26 H 0.168 0.832 27 H 0.168 0.832 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -20.740 -0.001 -11.181 23.562 hybrid contribution -0.537 -0.001 0.960 1.100 sum -21.277 -0.001 -10.221 23.604 Atomic orbital electron populations 1.20986 0.84682 1.06005 1.05062 1.22563 1.01887 0.94246 0.93324 1.24238 0.88692 1.01212 0.91609 1.68472 1.12710 1.27903 1.08355 1.36072 1.25579 0.89404 1.08503 1.05259 0.71908 0.73655 0.79064 1.93537 1.80571 1.45089 1.74772 1.93538 1.80572 1.45115 1.74743 1.30090 1.06613 1.13645 1.19952 1.21432 0.89006 1.03056 1.01170 1.18983 0.95405 0.96206 0.90235 1.21760 0.93292 1.50827 0.92857 0.91841 1.25942 1.03518 0.94616 0.95562 1.70080 1.37192 1.51530 0.98295 0.85407 0.79325 0.77817 0.78575 1.18642 1.20308 1.20299 1.68474 1.12708 1.27902 1.08355 1.24238 0.88692 1.01210 0.91611 0.87961 0.88484 0.88484 0.76782 0.83159 0.83166 0.90637 0.90633 0.97627 0.97620 0.92663 0.76786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.28 10.06 71.24 0.72 0.43 16 2 C -0.12 -1.48 5.91 -19.69 -0.12 -1.60 16 3 C 0.11 1.90 11.01 84.70 0.93 2.83 16 4 N -0.46 -12.69 10.09 -197.46 -1.99 -14.68 16 5 C -0.25 -7.50 7.37 180.88 1.33 -6.16 16 6 S 2.52 85.65 5.28 -56.49 -0.30 85.35 16 7 O -0.94 -36.43 17.71 -127.65 -2.26 -38.69 16 8 O -0.94 -36.43 17.71 -127.65 -2.26 -38.69 16 9 C -0.57 -18.69 5.98 71.98 0.43 -18.26 16 10 C -0.11 -4.44 5.16 30.60 0.16 -4.28 16 11 C 0.03 1.57 4.97 29.85 0.15 1.72 16 12 C -0.55 -31.28 9.11 25.60 0.23 -31.05 16 13 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 14 C 0.00 0.10 5.46 84.66 0.46 0.56 16 15 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 16 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 17 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 N -0.46 -12.69 10.09 -197.47 -1.99 -14.68 16 21 C 0.11 1.90 11.01 84.70 0.93 2.83 16 22 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 23 H 0.10 0.00 8.10 -2.39 -0.02 -0.02 16 24 H 0.10 0.00 8.10 -2.38 -0.02 -0.02 16 25 H 0.22 1.83 8.06 -2.91 -0.02 1.81 16 26 H 0.15 4.41 8.14 -2.39 -0.02 4.39 16 27 H 0.15 4.41 8.14 -2.39 -0.02 4.39 16 28 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 32 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.22 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -81.38 306.43 -0.16 -81.53 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 1.11 Total: 2.19 kcal Atomic # 6 Polarization: -58.20 SS G_CDS: 5.23 Total: -52.97 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -3.70 Total: -85.10 kcal Atomic # 8 Polarization: -72.87 SS G_CDS: -4.52 Total: -77.39 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 85.65 SS G_CDS: -0.30 Total: 85.35 kcal Total: -81.38 -0.16 -81.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091574679.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.173 kcal (2) G-P(sol) polarization free energy of solvation -81.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds