Wall clock time and date at job start Mon Mar 30 2020 01:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46507 * 109.47099 * 2 1 4 4 C 1.46504 * 119.99438 * 85.00178 * 3 2 1 5 5 C 1.50707 * 109.46935 * 85.00508 * 4 3 2 6 6 C 1.38227 * 119.62059 * 95.01845 * 5 4 3 7 7 C 1.38627 * 119.15702 * 179.74122 * 6 5 4 8 8 C 1.38669 * 118.42389 * 0.47826 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.49762 * 8 7 6 10 10 N 1.31856 * 119.61137 * 274.99275 * 5 4 3 11 11 S 1.65596 * 120.00250 * 265.00011 * 3 2 1 12 12 O 1.42102 * 106.39735 * 23.54253 * 11 3 2 13 13 O 1.42098 * 106.40071 * 156.46006 * 11 3 2 14 14 C 1.76195 * 107.21922 * 270.00086 * 11 3 2 15 15 H 1.07997 * 120.00248 * 0.02562 * 14 11 3 16 16 C 1.37884 * 120.00000 * 179.97438 * 14 11 3 17 17 N 1.31510 * 119.99725 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99854 * 179.97438 * 16 14 11 19 19 H 1.48510 * 109.46827 * 90.00500 * 18 16 14 20 20 H 1.48503 * 109.46983 * 209.99921 * 18 16 14 21 21 H 1.48497 * 109.47567 * 330.00421 * 18 16 14 22 22 H 1.09004 * 109.47263 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47358 * 299.99606 * 1 2 3 24 24 H 1.08997 * 109.47839 * 59.99619 * 1 2 3 25 25 H 1.08998 * 109.47406 * 240.00419 * 2 1 3 26 26 H 1.09001 * 109.47639 * 119.99901 * 2 1 3 27 27 H 1.08997 * 109.47679 * 324.99975 * 4 3 2 28 28 H 1.09003 * 109.46652 * 204.99935 * 4 3 2 29 29 H 1.07998 * 120.41916 * 359.95342 * 6 5 4 30 30 H 1.08008 * 120.78688 * 180.22921 * 7 6 5 31 31 H 1.08002 * 120.42244 * 179.78279 * 8 7 6 32 32 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 33 33 H 0.97003 * 119.99602 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 1.2640 5 6 3.4948 1.7888 1.8823 6 6 4.5695 2.6288 1.6588 7 6 5.7933 2.3283 2.2366 8 6 5.8933 1.1837 3.0130 9 6 4.7751 0.3918 3.1923 10 7 3.6253 0.7111 2.6307 11 16 2.4121 2.1203 -1.4286 12 8 1.6867 1.4416 -2.4447 13 8 2.3056 3.5187 -1.1997 14 6 4.1168 1.7942 -1.7319 15 1 4.6868 1.2033 -1.0303 16 6 4.7230 2.2926 -2.8657 17 7 4.0288 3.0117 -3.7203 18 14 6.5305 1.9474 -3.1868 19 1 6.6634 0.6919 -3.9688 20 1 7.1207 3.0734 -3.9545 21 1 7.2444 1.8025 -1.8928 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3635 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.3617 1.8097 1.9454 28 1 2.0921 3.1803 1.0757 29 1 4.4564 3.5099 1.0446 30 1 6.6495 2.9683 2.0825 31 1 6.8321 0.9169 3.4755 32 1 4.8437 -0.4991 3.7988 33 1 4.4552 3.3620 -4.5181 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094915863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:11 Heat of formation + Delta-G solvation = -57.390839 kcal Electronic energy + Delta-G solvation = -19368.267093 eV Core-core repulsion = 16327.424052 eV Total energy + Delta-G solvation = -3040.843041 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.85744 -36.07659 -35.32294 -33.95565 -33.07459 -32.20665 -31.78098 -29.33421 -26.18075 -25.74514 -23.22644 -22.34941 -21.32170 -18.70714 -17.29412 -16.53987 -16.37582 -15.73824 -15.38955 -15.24770 -14.95366 -14.07509 -13.63382 -13.32049 -13.25050 -13.07698 -12.91922 -12.21723 -12.00161 -11.71342 -11.63399 -11.36319 -11.24059 -11.14730 -10.70553 -10.62544 -10.29190 -10.09785 -10.06992 -9.56138 -9.29278 -9.24993 -8.90133 -8.71536 -8.21990 -6.69992 -5.31026 1.36205 1.59153 2.29738 3.04353 3.11551 3.17667 3.99478 4.11141 4.56576 4.63466 4.66562 5.05423 5.08412 5.33980 5.45627 5.59282 5.69939 5.76003 5.78858 5.93466 5.98259 6.07808 6.11995 6.21085 6.32697 6.40748 6.49085 6.53310 6.76308 6.87675 6.99927 7.32634 7.59306 7.99343 8.28886 8.89430 10.23520 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.010722 C = 0.007240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.397925 B = 2610.922262 C = 3866.559777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.125 3.875 3 N -1.003 6.003 4 C 0.172 3.828 5 C 0.114 3.886 6 C -0.143 4.143 7 C -0.078 4.078 8 C -0.180 4.180 9 C 0.088 3.912 10 N -0.474 5.474 11 S 2.711 3.289 12 O -1.001 7.001 13 O -1.005 7.005 14 C -1.014 5.014 15 H 0.099 0.901 16 C 0.135 3.865 17 N -0.846 5.846 18 Si 0.915 3.085 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.263 1.263 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.144 0.856 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.149 0.851 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.928 -3.452 11.670 12.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.001 4.001 3 N -0.836 5.836 4 C 0.044 3.956 5 C -0.025 4.025 6 C -0.163 4.163 7 C -0.104 4.104 8 C -0.200 4.200 9 C -0.069 4.069 10 N -0.184 5.184 11 S 2.812 3.188 12 O -0.991 6.991 13 O -0.995 6.995 14 C -1.148 5.148 15 H 0.118 0.882 16 C -0.082 4.082 17 N -0.476 5.476 18 Si 0.739 3.261 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.187 1.187 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.124 0.876 29 H 0.162 0.838 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.167 0.833 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.517 -3.391 11.109 11.626 hybrid contribution 2.530 -0.001 -0.213 2.539 sum 3.047 -3.392 10.895 11.811 Atomic orbital electron populations 1.22198 0.96957 1.01467 1.02189 1.21048 0.93616 0.82647 1.02784 1.58015 1.81082 1.23032 1.21462 1.20023 0.91731 0.97776 0.86045 1.21896 0.97157 0.90196 0.93294 1.22215 0.93247 1.01778 0.99109 1.21569 0.97676 0.96359 0.94759 1.22056 1.00068 0.96657 1.01208 1.22636 0.88361 0.98740 0.97200 1.67468 1.26410 1.16406 1.08077 1.00649 0.76237 0.72205 0.69712 1.93360 1.75017 1.75651 1.55068 1.93336 1.89156 1.32386 1.84617 1.30582 1.21187 1.46840 1.16164 0.88233 1.24705 1.00463 0.90110 0.92951 1.69895 1.38330 1.28403 1.10928 0.86243 0.81798 0.78846 0.79182 1.19226 1.19971 1.18723 0.92307 0.92894 0.91961 0.90351 0.90848 0.89603 0.87650 0.83825 0.85094 0.85418 0.83324 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.23 37.15 0.38 -2.32 16 2 C 0.13 2.28 6.06 -4.04 -0.02 2.26 16 3 N -1.00 -20.75 2.77 -115.66 -0.32 -21.07 16 4 C 0.17 3.06 5.99 -5.19 -0.03 3.03 16 5 C 0.11 2.00 6.36 -82.58 -0.53 1.48 16 6 C -0.14 -2.46 9.72 -39.44 -0.38 -2.85 16 7 C -0.08 -1.13 10.18 -39.28 -0.40 -1.53 16 8 C -0.18 -2.34 10.11 -39.44 -0.40 -2.74 16 9 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 10 N -0.47 -7.80 10.25 -9.47 -0.10 -7.90 16 11 S 2.71 71.75 4.93 -107.50 -0.53 71.22 16 12 O -1.00 -29.18 16.99 -57.17 -0.97 -30.15 16 13 O -1.00 -28.40 16.57 -57.17 -0.95 -29.34 16 14 C -1.01 -27.64 9.75 30.60 0.30 -27.35 16 15 H 0.10 2.58 7.81 -52.49 -0.41 2.17 16 16 C 0.14 3.74 5.46 -17.82 -0.10 3.65 16 17 N -0.85 -24.64 13.19 55.43 0.73 -23.91 16 18 Si 0.92 20.53 29.54 -169.99 -5.02 15.51 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.08 1.52 7.61 -51.93 -0.40 1.12 16 26 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 27 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 28 H 0.11 1.89 6.81 -51.93 -0.35 1.54 16 29 H 0.14 2.55 8.06 -52.49 -0.42 2.13 16 30 H 0.13 1.60 8.06 -52.48 -0.42 1.17 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 304.00 15.07 4.58 4.58 Total: -1.00 -34.17 304.00 -8.05 -42.21 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.09 Total: 4.20 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -1.38 Total: -25.34 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.31 Total: -52.88 kcal Atomic # 8 Polarization: -57.58 SS G_CDS: -1.92 Total: -59.50 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 71.75 SS G_CDS: -0.53 Total: 71.22 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.17 -8.05 -42.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094915863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.178 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds