Wall clock time and date at job start Mon Mar 30 2020 02:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99857 * 2 1 4 4 C 1.39660 * 119.99866 * 179.72583 * 2 1 3 5 5 C 1.38999 * 120.03695 * 174.10641 * 4 2 1 6 6 C 1.38132 * 120.07565 * 179.76807 * 5 4 2 7 7 C 1.38179 * 120.14726 * 0.50253 * 6 5 4 8 8 C 1.38948 * 120.06999 * 359.74554 * 7 6 5 9 9 N 1.39672 * 120.03861 * 180.02562 * 8 7 6 10 10 S 1.65604 * 119.99653 * 74.82856 * 9 8 7 11 11 O 1.42102 * 106.39877 * 176.40416 * 10 9 8 12 12 O 1.42092 * 106.40471 * 309.32691 * 10 9 8 13 13 C 1.76202 * 107.21230 * 62.86959 * 10 9 8 14 14 H 1.07991 * 120.00519 * 4.90960 * 13 10 9 15 15 C 1.37886 * 119.99546 * 184.91424 * 13 10 9 16 16 N 1.31518 * 120.00018 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99907 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.47336 * 59.99984 * 17 15 13 19 19 H 1.48495 * 109.47135 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47129 * 300.00143 * 17 15 13 21 21 C 1.38753 * 120.04144 * 354.37537 * 4 2 1 22 22 H 1.08995 * 109.47238 * 185.33600 * 1 2 3 23 23 H 1.09000 * 109.47578 * 305.33876 * 1 2 3 24 24 H 1.08998 * 109.46909 * 65.33622 * 1 2 3 25 25 H 1.09008 * 109.47389 * 269.72630 * 3 2 1 26 26 H 1.09000 * 109.47684 * 29.72080 * 3 2 1 27 27 H 1.08994 * 109.47515 * 149.72535 * 3 2 1 28 28 H 1.08005 * 119.96186 * 0.02562 * 5 4 2 29 29 H 1.08005 * 119.92781 * 180.25469 * 6 5 4 30 30 H 1.07996 * 119.96203 * 179.77119 * 7 6 5 31 31 H 0.96998 * 120.00539 * 254.83946 * 9 8 7 32 32 H 0.96996 * 120.00058 * 179.97438 * 16 15 13 33 33 H 1.07998 * 120.06952 * 359.96005 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1633 -1.2095 0.0058 5 6 3.5477 -1.2142 -0.1177 6 6 4.2396 -2.4097 -0.1073 7 6 3.5576 -3.6052 0.0155 8 6 2.1732 -3.6079 0.1342 9 7 1.4845 -4.8166 0.2588 10 16 1.5192 -5.6453 1.6921 11 8 0.6670 -6.7702 1.5259 12 8 2.8874 -5.7544 2.0596 13 6 0.7581 -4.6196 2.9060 14 1 0.3086 -3.6817 2.6155 15 6 0.7365 -5.0147 4.2269 16 7 1.2835 -6.1572 4.5806 17 14 -0.0698 -3.9271 5.5139 18 1 -1.5025 -3.7357 5.1732 19 1 0.0396 -4.5729 6.8466 20 1 0.6121 -2.6082 5.5449 21 6 1.4753 -2.4081 0.1292 22 1 -0.3633 -1.0232 0.0956 23 1 -0.3634 0.5944 0.8383 24 1 -0.3633 0.4288 -0.9339 25 1 2.3834 1.5810 -1.0277 26 1 1.6063 2.0297 0.5095 27 1 3.1477 1.1397 0.5181 28 1 4.0835 -0.2818 -0.2178 29 1 5.3157 -2.4103 -0.1993 30 1 4.1012 -4.5383 0.0196 31 1 0.9860 -5.1707 -0.4942 32 1 1.2687 -6.4349 5.5098 33 1 0.3993 -2.4075 0.2217 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135467997.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:47 Heat of formation + Delta-G solvation = -48.881623 kcal Electronic energy + Delta-G solvation = -18849.947222 eV Core-core repulsion = 15809.473168 eV Total energy + Delta-G solvation = -3040.474053 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -39.37699 -36.45704 -35.16251 -33.95411 -33.75575 -33.02761 -30.09575 -28.96406 -27.43499 -26.10245 -24.58945 -21.71632 -20.61124 -19.02546 -17.74591 -17.20896 -16.21110 -15.82426 -15.51182 -15.03034 -14.92733 -14.70282 -14.03560 -13.65462 -13.55416 -13.35933 -12.56661 -12.34381 -12.09637 -11.99593 -11.85812 -11.41029 -11.21112 -11.18133 -10.87459 -10.61377 -10.53396 -10.29028 -10.15808 -9.55869 -9.26552 -9.20933 -8.75193 -8.18488 -7.02769 -6.67618 -5.28571 1.69206 1.99471 2.38695 3.10234 3.13946 3.19683 3.27239 4.08155 4.23650 4.67332 4.72793 5.01483 5.10418 5.29767 5.41289 5.43136 5.60283 5.64863 5.70566 5.76457 5.90389 5.91267 6.01488 6.14147 6.52058 6.57708 6.70018 6.95704 7.07607 7.22789 7.36197 7.41672 7.69553 7.98944 8.00294 8.91569 10.26875 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.007594 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.931233 B = 3686.462488 C = 4543.123927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.642 5.642 3 C 0.099 3.901 4 C 0.212 3.788 5 C -0.202 4.202 6 C -0.069 4.069 7 C -0.162 4.162 8 C 0.207 3.793 9 N -1.088 6.088 10 S 2.709 3.291 11 O -1.006 7.006 12 O -0.992 6.992 13 C -1.014 5.014 14 H 0.102 0.898 15 C 0.134 3.866 16 N -0.846 5.846 17 Si 0.920 3.080 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.264 1.264 21 C -0.195 4.195 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.409 0.591 32 H 0.291 0.709 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.712 13.170 -8.745 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.356 5.356 3 C -0.044 4.044 4 C 0.111 3.889 5 C -0.224 4.224 6 C -0.088 4.088 7 C -0.185 4.185 8 C 0.111 3.889 9 N -0.838 5.838 10 S 2.810 3.190 11 O -0.996 6.996 12 O -0.982 6.982 13 C -1.147 5.147 14 H 0.120 0.880 15 C -0.084 4.084 16 N -0.475 5.475 17 Si 0.743 3.257 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.189 1.189 21 C -0.220 4.220 22 H 0.099 0.901 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.244 0.756 32 H 0.101 0.899 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.125 12.329 -8.364 14.941 hybrid contribution -1.019 1.005 0.674 1.582 sum 0.106 13.334 -7.690 15.393 Atomic orbital electron populations 1.21675 0.79847 1.03433 1.00414 1.46172 1.04781 1.02976 1.81643 1.21523 0.97208 0.85086 1.00628 1.17592 0.91144 0.85244 0.94879 1.20598 0.92055 0.98400 1.11395 1.20718 0.99194 0.91498 0.97433 1.21355 0.93629 0.98927 1.04578 1.16938 0.90306 0.84856 0.96762 1.53856 1.64957 1.32887 1.32117 1.00735 0.73960 0.73133 0.71195 1.93385 1.69099 1.51155 1.85984 1.93366 1.36746 1.86528 1.81582 1.30428 1.54100 1.22198 1.08017 0.87977 1.24722 0.90963 0.94216 0.98477 1.69891 1.37074 1.19484 1.21079 0.86215 0.80190 0.80558 0.78693 1.18874 1.20098 1.18853 1.20966 1.00221 0.90630 1.10167 0.90081 0.92901 0.93407 0.93866 0.91992 0.91429 0.86400 0.86008 0.85352 0.75618 0.89855 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 10.62 59.85 0.64 1.64 16 2 N -0.64 -8.40 3.41 -187.58 -0.64 -9.04 16 3 C 0.10 0.97 10.09 59.85 0.60 1.57 16 4 C 0.21 3.36 6.53 -83.82 -0.55 2.81 16 5 C -0.20 -2.98 9.16 -39.34 -0.36 -3.34 16 6 C -0.07 -1.08 10.03 -39.64 -0.40 -1.48 16 7 C -0.16 -3.05 9.29 -39.34 -0.37 -3.42 16 8 C 0.21 4.08 5.78 -83.82 -0.48 3.60 16 9 N -1.09 -22.69 5.70 32.40 0.18 -22.51 16 10 S 2.71 73.19 5.01 -107.50 -0.54 72.65 16 11 O -1.01 -29.61 18.02 -57.17 -1.03 -30.64 16 12 O -0.99 -29.31 16.96 -57.17 -0.97 -30.28 16 13 C -1.01 -28.42 9.64 30.60 0.29 -28.13 16 14 H 0.10 2.64 7.81 -52.49 -0.41 2.23 16 15 C 0.13 3.80 5.46 -17.81 -0.10 3.70 16 16 N -0.85 -25.16 13.10 55.43 0.73 -24.43 16 17 Si 0.92 20.95 29.54 -169.99 -5.02 15.93 16 18 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 21 C -0.19 -3.45 9.23 -39.19 -0.36 -3.82 16 22 H 0.08 0.97 5.31 -51.93 -0.28 0.69 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 26 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 27 H 0.07 0.65 6.47 -51.93 -0.34 0.31 16 28 H 0.12 1.41 6.31 -52.48 -0.33 1.08 16 29 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 30 H 0.13 2.46 7.91 -52.49 -0.42 2.04 16 31 H 0.41 7.17 8.95 -34.47 -0.31 6.86 16 32 H 0.29 7.80 8.31 -40.82 -0.34 7.46 16 33 H 0.13 2.11 5.74 -52.49 -0.30 1.81 16 LS Contribution 296.26 15.07 4.46 4.46 Total: -1.00 -35.85 296.26 -7.53 -43.37 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -3.62 Total: 7.35 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: -1.08 Total: -26.87 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.27 Total: -55.98 kcal Atomic # 8 Polarization: -58.92 SS G_CDS: -2.00 Total: -60.92 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 73.19 SS G_CDS: -0.54 Total: 72.65 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.85 -7.53 -43.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135467997.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.509 kcal (2) G-P(sol) polarization free energy of solvation -35.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds