Wall clock time and date at job start Mon Mar 30 2020 02:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99857 * 2 1 4 4 C 1.39660 * 119.99866 * 179.72583 * 2 1 3 5 5 C 1.38999 * 120.03695 * 174.10641 * 4 2 1 6 6 C 1.38132 * 120.07565 * 179.76807 * 5 4 2 7 7 C 1.38179 * 120.14726 * 0.50253 * 6 5 4 8 8 C 1.38948 * 120.06999 * 359.74554 * 7 6 5 9 9 N 1.39672 * 120.03861 * 180.02562 * 8 7 6 10 10 S 1.65604 * 119.99653 * 74.82856 * 9 8 7 11 11 O 1.42102 * 106.39877 * 176.40416 * 10 9 8 12 12 O 1.42092 * 106.40471 * 309.32691 * 10 9 8 13 13 C 1.76202 * 107.21230 * 62.86959 * 10 9 8 14 14 H 1.07991 * 120.00519 * 4.90960 * 13 10 9 15 15 C 1.37886 * 119.99546 * 184.91424 * 13 10 9 16 16 N 1.31518 * 120.00018 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99907 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.47336 * 59.99984 * 17 15 13 19 19 H 1.48495 * 109.47135 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47129 * 300.00143 * 17 15 13 21 21 C 1.38753 * 120.04144 * 354.37537 * 4 2 1 22 22 H 1.08995 * 109.47238 * 185.33600 * 1 2 3 23 23 H 1.09000 * 109.47578 * 305.33876 * 1 2 3 24 24 H 1.08998 * 109.46909 * 65.33622 * 1 2 3 25 25 H 1.09008 * 109.47389 * 269.72630 * 3 2 1 26 26 H 1.09000 * 109.47684 * 29.72080 * 3 2 1 27 27 H 1.08994 * 109.47515 * 149.72535 * 3 2 1 28 28 H 1.08005 * 119.96186 * 0.02562 * 5 4 2 29 29 H 1.08005 * 119.92781 * 180.25469 * 6 5 4 30 30 H 1.07996 * 119.96203 * 179.77119 * 7 6 5 31 31 H 0.96998 * 120.00539 * 254.83946 * 9 8 7 32 32 H 0.96996 * 120.00058 * 179.97438 * 16 15 13 33 33 H 1.07998 * 120.06952 * 359.96005 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1633 -1.2095 0.0058 5 6 3.5477 -1.2142 -0.1177 6 6 4.2396 -2.4097 -0.1073 7 6 3.5576 -3.6052 0.0155 8 6 2.1732 -3.6079 0.1342 9 7 1.4845 -4.8166 0.2588 10 16 1.5192 -5.6453 1.6921 11 8 0.6670 -6.7702 1.5259 12 8 2.8874 -5.7544 2.0596 13 6 0.7581 -4.6196 2.9060 14 1 0.3086 -3.6817 2.6155 15 6 0.7365 -5.0147 4.2269 16 7 1.2835 -6.1572 4.5806 17 14 -0.0698 -3.9271 5.5139 18 1 -1.5025 -3.7357 5.1732 19 1 0.0396 -4.5729 6.8466 20 1 0.6121 -2.6082 5.5449 21 6 1.4753 -2.4081 0.1292 22 1 -0.3633 -1.0232 0.0956 23 1 -0.3634 0.5944 0.8383 24 1 -0.3633 0.4288 -0.9339 25 1 2.3834 1.5810 -1.0277 26 1 1.6063 2.0297 0.5095 27 1 3.1477 1.1397 0.5181 28 1 4.0835 -0.2818 -0.2178 29 1 5.3157 -2.4103 -0.1993 30 1 4.1012 -4.5383 0.0196 31 1 0.9860 -5.1707 -0.4942 32 1 1.2687 -6.4349 5.5098 33 1 0.3993 -2.4075 0.2217 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135467997.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:47 Heat of formation + Delta-G solvation = -76.422942 kcal Electronic energy + Delta-G solvation = -18851.141503 eV Core-core repulsion = 15809.473168 eV Total energy + Delta-G solvation = -3041.668335 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.61758 -37.73066 -37.31301 -36.18446 -35.31458 -35.02800 -31.28081 -30.14312 -28.50917 -28.27020 -25.63326 -23.02984 -21.87058 -21.07529 -19.41486 -18.79331 -18.27888 -17.29269 -16.87369 -16.64934 -16.13041 -15.89605 -15.85271 -15.52895 -14.78050 -14.70058 -14.00741 -13.65039 -13.35975 -13.28213 -13.08470 -13.01224 -12.82152 -12.76193 -12.57631 -12.53498 -12.35797 -12.33192 -11.87355 -11.24797 -11.12005 -10.79354 -10.56195 -9.58558 -8.76726 -8.13671 -7.49223 0.08475 0.61749 0.73011 1.31662 1.34474 1.47216 2.18622 2.30411 2.56940 2.88334 2.97077 3.65400 3.98755 4.17010 4.27250 4.39051 4.50769 4.52667 4.59187 4.66206 4.67903 4.84760 4.90437 4.97187 4.98688 5.18775 5.30862 5.33500 5.64934 5.72714 5.86275 5.94254 6.33855 6.45529 6.61433 6.76425 8.20238 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.007594 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.931233 B = 3686.462488 C = 4543.123927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.644 5.644 3 C 0.091 3.909 4 C 0.212 3.788 5 C -0.195 4.195 6 C -0.064 4.064 7 C -0.194 4.194 8 C 0.175 3.825 9 N -1.073 6.073 10 S 2.715 3.285 11 O -1.042 7.042 12 O -1.028 7.028 13 C -1.033 5.033 14 H 0.117 0.883 15 C 0.072 3.928 16 N -0.893 5.893 17 Si 0.989 3.011 18 H -0.248 1.248 19 H -0.261 1.261 20 H -0.252 1.252 21 C -0.210 4.210 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.111 0.889 31 H 0.422 0.578 32 H 0.300 0.700 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.367 16.738 -8.623 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.356 5.356 3 C -0.051 4.051 4 C 0.109 3.891 5 C -0.217 4.217 6 C -0.083 4.083 7 C -0.217 4.217 8 C 0.080 3.920 9 N -0.827 5.827 10 S 2.817 3.183 11 O -1.032 7.032 12 O -1.017 7.017 13 C -1.167 5.167 14 H 0.135 0.865 15 C -0.141 4.141 16 N -0.524 5.524 17 Si 0.806 3.194 18 H -0.172 1.172 19 H -0.185 1.185 20 H -0.176 1.176 21 C -0.235 4.235 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.171 0.829 29 H 0.170 0.830 30 H 0.129 0.871 31 H 0.259 0.741 32 H 0.110 0.890 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.767 15.909 -8.273 17.948 hybrid contribution -0.881 0.027 0.511 1.018 sum -0.113 15.936 -7.762 17.726 Atomic orbital electron populations 1.21832 0.78981 1.03113 1.02126 1.46488 1.05662 1.03022 1.80435 1.21777 0.97429 0.83865 1.02038 1.17781 0.91834 0.85766 0.93709 1.20992 0.91827 0.99380 1.09548 1.21061 1.00754 0.90626 0.95855 1.21425 0.93557 0.99762 1.06941 1.17209 0.90861 0.84633 0.99325 1.53108 1.65378 1.33501 1.30701 1.00199 0.72998 0.73023 0.72037 1.93322 1.69621 1.53391 1.86893 1.93311 1.38346 1.87197 1.82863 1.30742 1.54296 1.22845 1.08799 0.86459 1.25999 0.91292 0.95701 1.01139 1.69985 1.38631 1.21550 1.22240 0.85189 0.79719 0.78600 0.75851 1.17181 1.18530 1.17593 1.21033 1.00657 0.90762 1.11059 0.91393 0.91557 0.91294 0.92222 0.90109 0.91051 0.82878 0.82967 0.87077 0.74103 0.89033 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.60 10.62 127.77 1.36 2.96 16 2 N -0.64 -14.71 3.41 -747.38 -2.55 -17.25 16 3 C 0.09 1.39 10.09 127.77 1.29 2.68 16 4 C 0.21 6.23 6.53 38.20 0.25 6.48 16 5 C -0.19 -5.18 9.16 22.43 0.21 -4.98 16 6 C -0.06 -1.90 10.03 22.23 0.22 -1.68 16 7 C -0.19 -7.40 9.29 22.43 0.21 -7.19 16 8 C 0.17 6.99 5.78 38.19 0.22 7.21 16 9 N -1.07 -46.31 5.70 -51.42 -0.29 -46.60 16 10 S 2.71 152.08 5.01 -56.49 -0.28 151.80 16 11 O -1.04 -63.84 18.02 -128.00 -2.31 -66.15 16 12 O -1.03 -63.36 16.96 -128.00 -2.17 -65.53 16 13 C -1.03 -58.61 9.64 67.74 0.65 -57.96 16 14 H 0.12 6.06 7.81 -2.92 -0.02 6.04 16 15 C 0.07 4.07 5.46 84.66 0.46 4.53 16 16 N -0.89 -54.18 13.10 21.45 0.28 -53.90 16 17 Si 0.99 41.97 29.54 68.60 2.03 44.00 16 18 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 19 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 20 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 21 C -0.21 -7.31 9.23 22.53 0.21 -7.10 16 22 H 0.07 1.51 5.31 -2.39 -0.01 1.49 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.08 0.96 8.07 -2.39 -0.02 0.94 16 27 H 0.07 1.05 6.47 -2.39 -0.02 1.03 16 28 H 0.15 2.95 6.31 -2.91 -0.02 2.93 16 29 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.11 4.49 7.91 -2.91 -0.02 4.47 16 31 H 0.42 15.42 8.95 -96.75 -0.87 14.55 16 32 H 0.30 16.30 8.31 -92.71 -0.77 15.53 16 33 H 0.13 4.33 5.74 -2.91 -0.02 4.31 16 Total: -1.00 -79.29 296.26 0.06 -79.23 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.27 Total: 29.45 kcal Atomic # 6 Polarization: -60.12 SS G_CDS: 5.08 Total: -55.04 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -2.56 Total: -117.76 kcal Atomic # 8 Polarization: -127.20 SS G_CDS: -4.48 Total: -131.68 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: 152.08 SS G_CDS: -0.28 Total: 151.80 kcal Total: -79.29 0.06 -79.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135467997.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.808 kcal (2) G-P(sol) polarization free energy of solvation -79.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds