Wall clock time and date at job start Mon Mar 30 2020 02:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31302 * 1 3 3 Si 1.86803 * 120.00440 * 2 1 4 4 H 1.48496 * 109.47228 * 274.98451 * 3 2 1 5 5 H 1.48505 * 109.46799 * 34.98289 * 3 2 1 6 6 H 1.48495 * 109.47150 * 154.98310 * 3 2 1 7 7 C 1.38979 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00093 * 185.94724 * 7 2 1 9 9 N 1.37318 * 120.00031 * 5.94857 * 7 2 1 10 10 C 1.36513 * 126.06982 * 174.41434 * 9 7 2 11 11 C 1.35683 * 107.50495 * 180.13808 * 10 9 7 12 12 N 1.40556 * 126.07912 * 179.90018 * 11 10 9 13 13 C 1.37662 * 119.99446 * 179.71082 * 12 11 10 14 14 N 1.30888 * 124.96283 * 180.02562 * 13 12 11 15 15 C 1.36105 * 108.70229 * 179.97438 * 14 13 12 16 16 C 1.39559 * 133.67173 * 180.02562 * 15 14 13 17 17 C 1.37769 * 119.73535 * 180.02562 * 16 15 14 18 18 C 1.38640 * 120.39034 * 359.97438 * 17 16 15 19 19 C 1.38037 * 120.46475 * 0.02562 * 18 17 16 20 20 C 1.38535 * 119.89586 * 359.97438 * 19 18 17 21 21 O 1.34487 * 124.96520 * 359.69929 * 13 12 11 22 22 C 1.40663 * 107.83274 * 359.63238 * 11 10 9 23 23 N 1.30913 * 108.39146 * 0.23291 * 22 11 10 24 24 H 0.97005 * 119.99488 * 359.97438 * 1 2 3 25 25 H 1.08004 * 126.24733 * 0.02562 * 10 9 7 26 26 H 0.96994 * 120.00210 * 359.97438 * 12 11 10 27 27 H 1.08008 * 120.13646 * 359.96985 * 16 15 14 28 28 H 1.08001 * 119.80410 * 179.97438 * 17 16 15 29 29 H 1.07995 * 119.76818 * 180.02562 * 18 17 16 30 30 H 1.07998 * 120.04785 * 180.02562 * 19 18 17 31 31 H 1.08001 * 125.80956 * 180.24679 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 2.3894 2.1072 -1.3947 5 1 1.5012 2.6200 0.8027 6 1 3.5933 1.4119 0.5920 7 6 2.0079 -1.2036 -0.0005 8 1 3.0835 -1.2062 0.0964 9 7 1.3268 -2.3896 -0.1243 10 6 1.8862 -3.6287 -0.2469 11 6 0.8732 -4.5259 -0.3463 12 7 1.0109 -5.9173 -0.4897 13 6 -0.1082 -6.7146 -0.5733 14 7 -0.0933 -8.0165 -0.7071 15 6 -1.3775 -8.4651 -0.7546 16 6 -1.9521 -9.7302 -0.8848 17 6 -3.3237 -9.8594 -0.9003 18 6 -4.1348 -8.7408 -0.7868 19 6 -3.5794 -7.4837 -0.6575 20 6 -2.2021 -7.3358 -0.6401 21 8 -1.3766 -6.2702 -0.5233 22 6 -0.3392 -3.8163 -0.2742 23 7 -0.0653 -2.5430 -0.1419 24 1 -0.4849 0.8401 0.0004 25 1 2.9425 -3.8537 -0.2637 26 1 1.8943 -6.3161 -0.5258 27 1 -1.3242 -10.6045 -0.9740 28 1 -3.7696 -10.8378 -1.0014 29 1 -5.2088 -8.8537 -0.7997 30 1 -4.2176 -6.6170 -0.5692 31 1 -1.3280 -4.2484 -0.3199 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142799651.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:05 Heat of formation + Delta-G solvation = 134.338418 kcal Electronic energy + Delta-G solvation = -19080.467222 eV Core-core repulsion = 15944.786985 eV Total energy + Delta-G solvation = -3135.680236 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.77397 -39.76813 -37.81063 -35.60539 -34.15417 -33.31234 -30.51763 -30.36892 -29.17832 -27.45406 -25.02570 -23.26193 -22.40178 -21.57409 -20.69884 -19.90421 -18.27217 -17.53604 -16.70942 -16.54039 -16.49753 -15.62809 -15.21339 -14.56496 -14.05896 -13.84017 -13.70743 -13.44086 -13.03570 -12.39888 -12.08783 -11.93864 -11.82554 -11.61609 -11.33201 -11.23661 -10.94613 -10.61144 -10.49400 -10.02294 -9.45335 -9.08585 -8.60161 -8.33049 -8.03701 -6.72224 -6.68199 -4.39804 1.07029 1.44175 2.37513 2.73674 2.92003 2.97674 3.03435 3.44521 3.45009 3.77387 3.87594 4.09777 4.52506 4.77420 4.86022 4.94008 5.18901 5.32469 5.38687 5.58151 5.87026 6.00708 6.08097 6.23775 6.37510 6.49231 6.50237 6.61860 6.72278 6.80858 7.01554 7.20073 7.60050 7.77268 7.95601 8.30993 8.52087 9.15999 9.40677 10.24279 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.049936 B = 0.003795 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.581766 B = 7375.934960 C = 7923.035342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.047 3.953 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.321 4.321 8 H 0.121 0.879 9 N -0.136 5.136 10 C -0.074 4.074 11 C -0.062 4.062 12 N -0.565 5.565 13 C 0.522 3.478 14 N -0.567 5.567 15 C 0.076 3.924 16 C -0.095 4.095 17 C -0.112 4.112 18 C -0.129 4.129 19 C -0.076 4.076 20 C -0.020 4.020 21 O -0.219 6.219 22 C -0.048 4.048 23 N -0.250 5.250 24 H 0.277 0.723 25 H 0.153 0.847 26 H 0.432 0.568 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 -11.148 -1.172 11.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.171 4.171 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.454 4.454 8 H 0.138 0.862 9 N 0.097 4.903 10 C -0.225 4.225 11 C -0.168 4.168 12 N -0.202 5.202 13 C 0.220 3.780 14 N -0.311 5.311 15 C -0.038 4.038 16 C -0.115 4.115 17 C -0.131 4.131 18 C -0.149 4.149 19 C -0.095 4.095 20 C -0.071 4.071 21 O -0.111 6.111 22 C -0.223 4.223 23 N -0.081 5.081 24 H 0.088 0.912 25 H 0.170 0.830 26 H 0.273 0.727 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.181 -9.934 -1.054 10.484 hybrid contribution 0.584 0.210 -0.047 0.622 sum -2.597 -9.724 -1.101 10.125 Atomic orbital electron populations 1.70208 1.06250 1.28353 1.34494 1.25683 0.95745 1.00466 0.95233 0.85756 0.79480 0.79660 0.78991 1.19503 1.19986 1.18637 1.19979 0.92341 0.80464 1.52595 0.86187 1.44578 1.03753 1.03839 1.38114 1.21181 0.96973 0.85283 1.19061 1.17239 0.94849 0.80478 1.24215 1.39841 1.02719 1.03421 1.74205 1.21391 0.80020 0.85619 0.90923 1.71066 1.20386 1.04779 1.34909 1.19688 0.88228 0.94809 1.01079 1.20116 0.94403 0.94198 1.02809 1.20897 0.92665 0.98808 1.00713 1.20774 0.99789 0.91069 1.03241 1.19824 0.88989 0.98641 1.02012 1.20115 0.93202 0.85136 1.08618 1.84603 1.15570 1.34157 1.76730 1.23626 0.96679 0.91869 1.10161 1.78255 0.90579 1.14094 1.25137 0.91223 0.82981 0.72714 0.85355 0.85332 0.84992 0.85200 0.82069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.49 11.84 55.49 0.66 -19.84 16 2 C 0.05 1.15 5.50 -17.50 -0.10 1.05 16 3 Si 0.94 18.11 29.56 -169.99 -5.02 13.08 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.32 -8.10 10.24 -14.82 -0.15 -8.25 16 8 H 0.12 2.69 7.84 -52.49 -0.41 2.28 16 9 N -0.14 -3.54 3.74 -11.41 -0.04 -3.58 16 10 C -0.07 -1.65 11.49 -16.38 -0.19 -1.84 16 11 C -0.06 -1.36 6.92 -83.85 -0.58 -1.94 16 12 N -0.57 -10.46 5.58 -11.88 -0.07 -10.53 16 13 C 0.52 10.10 8.82 -87.61 -0.77 9.32 16 14 N -0.57 -10.60 11.39 -12.11 -0.14 -10.73 16 15 C 0.08 1.30 7.23 -84.70 -0.61 0.69 16 16 C -0.09 -1.28 10.10 -39.26 -0.40 -1.68 16 17 C -0.11 -1.23 10.02 -39.60 -0.40 -1.63 16 18 C -0.13 -1.45 10.03 -39.51 -0.40 -1.84 16 19 C -0.08 -1.05 10.06 -39.55 -0.40 -1.45 16 20 C -0.02 -0.34 7.42 -38.70 -0.29 -0.63 16 21 O -0.22 -4.33 7.70 2.38 0.02 -4.31 16 22 C -0.05 -1.18 11.02 -17.03 -0.19 -1.36 16 23 N -0.25 -6.88 10.42 30.80 0.32 -6.56 16 24 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 25 H 0.15 2.80 8.06 -52.48 -0.42 2.37 16 26 H 0.43 6.60 8.95 -40.82 -0.37 6.23 16 27 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 28 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 29 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.16 3.76 5.89 -52.49 -0.31 3.45 16 LS Contribution 281.65 15.07 4.24 4.24 Total: -1.00 -30.86 281.65 -6.83 -37.69 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -2.33 Total: 10.09 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -4.46 Total: -9.56 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.73 Total: -51.24 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: 0.02 Total: -4.31 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.02 Total: 13.08 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.86 -6.83 -37.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142799651.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.031 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds