Wall clock time and date at job start Mon Mar 30 2020 02:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31302 * 1 3 3 Si 1.86803 * 120.00440 * 2 1 4 4 H 1.48496 * 109.47228 * 274.98451 * 3 2 1 5 5 H 1.48505 * 109.46799 * 34.98289 * 3 2 1 6 6 H 1.48495 * 109.47150 * 154.98310 * 3 2 1 7 7 C 1.38979 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00093 * 185.94724 * 7 2 1 9 9 N 1.37318 * 120.00031 * 5.94857 * 7 2 1 10 10 C 1.36513 * 126.06982 * 174.41434 * 9 7 2 11 11 C 1.35683 * 107.50495 * 180.13808 * 10 9 7 12 12 N 1.40556 * 126.07912 * 179.90018 * 11 10 9 13 13 C 1.37662 * 119.99446 * 179.71082 * 12 11 10 14 14 N 1.30888 * 124.96283 * 180.02562 * 13 12 11 15 15 C 1.36105 * 108.70229 * 179.97438 * 14 13 12 16 16 C 1.39559 * 133.67173 * 180.02562 * 15 14 13 17 17 C 1.37769 * 119.73535 * 180.02562 * 16 15 14 18 18 C 1.38640 * 120.39034 * 359.97438 * 17 16 15 19 19 C 1.38037 * 120.46475 * 0.02562 * 18 17 16 20 20 C 1.38535 * 119.89586 * 359.97438 * 19 18 17 21 21 O 1.34487 * 124.96520 * 359.69929 * 13 12 11 22 22 C 1.40663 * 107.83274 * 359.63238 * 11 10 9 23 23 N 1.30913 * 108.39146 * 0.23291 * 22 11 10 24 24 H 0.97005 * 119.99488 * 359.97438 * 1 2 3 25 25 H 1.08004 * 126.24733 * 0.02562 * 10 9 7 26 26 H 0.96994 * 120.00210 * 359.97438 * 12 11 10 27 27 H 1.08008 * 120.13646 * 359.96985 * 16 15 14 28 28 H 1.08001 * 119.80410 * 179.97438 * 17 16 15 29 29 H 1.07995 * 119.76818 * 180.02562 * 18 17 16 30 30 H 1.07998 * 120.04785 * 180.02562 * 19 18 17 31 31 H 1.08001 * 125.80956 * 180.24679 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 2.3894 2.1072 -1.3947 5 1 1.5012 2.6200 0.8027 6 1 3.5933 1.4119 0.5920 7 6 2.0079 -1.2036 -0.0005 8 1 3.0835 -1.2062 0.0964 9 7 1.3268 -2.3896 -0.1243 10 6 1.8862 -3.6287 -0.2469 11 6 0.8732 -4.5259 -0.3463 12 7 1.0109 -5.9173 -0.4897 13 6 -0.1082 -6.7146 -0.5733 14 7 -0.0933 -8.0165 -0.7071 15 6 -1.3775 -8.4651 -0.7546 16 6 -1.9521 -9.7302 -0.8848 17 6 -3.3237 -9.8594 -0.9003 18 6 -4.1348 -8.7408 -0.7868 19 6 -3.5794 -7.4837 -0.6575 20 6 -2.2021 -7.3358 -0.6401 21 8 -1.3766 -6.2702 -0.5233 22 6 -0.3392 -3.8163 -0.2742 23 7 -0.0653 -2.5430 -0.1419 24 1 -0.4849 0.8401 0.0004 25 1 2.9425 -3.8537 -0.2637 26 1 1.8943 -6.3161 -0.5258 27 1 -1.3242 -10.6045 -0.9740 28 1 -3.7696 -10.8378 -1.0014 29 1 -5.2088 -8.8537 -0.7997 30 1 -4.2176 -6.6170 -0.5692 31 1 -1.3280 -4.2484 -0.3199 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000142799651.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:05 Heat of formation + Delta-G solvation = 112.699652 kcal Electronic energy + Delta-G solvation = -19081.405549 eV Core-core repulsion = 15944.786985 eV Total energy + Delta-G solvation = -3136.618564 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.09654 -41.58943 -38.94077 -37.12010 -35.63073 -34.97181 -32.33744 -31.49767 -30.58798 -29.00955 -26.84349 -24.56402 -23.67830 -22.87134 -22.44415 -21.55899 -19.92062 -18.80191 -18.10699 -17.92783 -17.88974 -17.44280 -16.67559 -15.81444 -15.53300 -15.48021 -15.06486 -14.87819 -14.48075 -13.68597 -13.54578 -13.36158 -13.31216 -13.00029 -12.90044 -12.79482 -12.30928 -12.07178 -11.86846 -11.34228 -11.16641 -10.96732 -10.22672 -9.72200 -9.44238 -8.53137 -8.27792 -6.29966 -0.09076 0.33768 1.03754 1.21452 1.40581 1.48285 1.58418 1.75345 1.97127 2.23206 2.26948 2.80046 2.82054 3.03239 3.59163 3.79949 4.17878 4.23355 4.27310 4.39898 4.43386 4.50284 4.71995 4.87620 4.95173 5.15838 5.20844 5.30328 5.42671 5.49050 5.56381 5.80581 5.92041 6.16755 6.33256 6.63979 6.95913 7.35074 7.52830 8.46561 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.049936 B = 0.003795 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.581766 B = 7375.934960 C = 7923.035342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.004 4.004 3 Si 1.020 2.980 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.243 1.243 7 C -0.352 4.352 8 H 0.144 0.856 9 N -0.161 5.161 10 C -0.071 4.071 11 C -0.044 4.044 12 N -0.562 5.562 13 C 0.501 3.499 14 N -0.568 5.568 15 C 0.036 3.964 16 C -0.098 4.098 17 C -0.097 4.097 18 C -0.106 4.106 19 C -0.094 4.094 20 C -0.052 4.052 21 O -0.242 6.242 22 C -0.068 4.068 23 N -0.298 5.298 24 H 0.279 0.721 25 H 0.193 0.807 26 H 0.446 0.554 27 H 0.147 0.853 28 H 0.175 0.825 29 H 0.176 0.824 30 H 0.140 0.860 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.160 -13.118 -1.413 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.216 4.216 3 Si 0.838 3.162 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.166 1.166 7 C -0.483 4.483 8 H 0.161 0.839 9 N 0.071 4.929 10 C -0.221 4.221 11 C -0.150 4.150 12 N -0.202 5.202 13 C 0.199 3.801 14 N -0.312 5.312 15 C -0.076 4.076 16 C -0.118 4.118 17 C -0.115 4.115 18 C -0.125 4.125 19 C -0.112 4.112 20 C -0.102 4.102 21 O -0.134 6.134 22 C -0.243 4.243 23 N -0.130 5.130 24 H 0.088 0.912 25 H 0.210 0.790 26 H 0.289 0.711 27 H 0.165 0.835 28 H 0.193 0.807 29 H 0.193 0.807 30 H 0.158 0.842 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.382 -11.984 -1.299 12.519 hybrid contribution 0.433 0.459 -0.001 0.631 sum -2.949 -11.525 -1.301 11.967 Atomic orbital electron populations 1.70373 1.08409 1.29370 1.36650 1.26872 0.96471 1.04298 0.93953 0.84563 0.78563 0.74089 0.78948 1.19192 1.20093 1.16572 1.20699 0.93591 0.80798 1.53221 0.83858 1.44847 1.03415 1.05182 1.39501 1.21877 0.98825 0.84162 1.17252 1.17246 0.93786 0.82038 1.21970 1.39608 1.03378 1.01940 1.75291 1.21570 0.80111 0.86032 0.92371 1.70979 1.21753 1.04399 1.34037 1.20162 0.87609 0.96309 1.03500 1.20568 0.96010 0.93273 1.01919 1.21477 0.91442 1.00847 0.97781 1.21388 1.02013 0.89666 0.99407 1.20282 0.87738 1.00654 1.02574 1.20726 0.94465 0.84699 1.10293 1.84535 1.16104 1.35709 1.77057 1.23768 0.97821 0.91778 1.10936 1.78144 0.92313 1.15632 1.26884 0.91165 0.79014 0.71097 0.83541 0.80714 0.80687 0.84170 0.81977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.68 11.84 21.66 0.26 -45.42 16 2 C 0.00 -0.18 5.50 84.95 0.47 0.29 16 3 Si 1.02 37.23 29.56 68.60 2.03 39.26 16 4 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.28 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.24 -7.99 7.11 99.48 0.71 -7.29 16 7 C -0.35 -17.96 10.24 84.01 0.86 -17.10 16 8 H 0.14 6.31 7.84 -2.91 -0.02 6.29 16 9 N -0.16 -8.61 3.74 -190.01 -0.71 -9.32 16 10 C -0.07 -3.17 11.49 83.37 0.96 -2.21 16 11 C -0.04 -1.98 6.92 37.74 0.26 -1.72 16 12 N -0.56 -21.16 5.58 -302.08 -1.69 -22.85 16 13 C 0.50 19.93 8.82 179.30 1.58 21.51 16 14 N -0.57 -21.40 11.39 -306.44 -3.49 -24.89 16 15 C 0.04 1.24 7.23 39.30 0.28 1.52 16 16 C -0.10 -2.39 10.10 22.48 0.23 -2.16 16 17 C -0.10 -1.68 10.02 22.25 0.22 -1.46 16 18 C -0.11 -1.93 10.03 22.32 0.22 -1.70 16 19 C -0.09 -2.47 10.06 22.29 0.22 -2.24 16 20 C -0.05 -1.83 7.42 22.84 0.17 -1.66 16 21 O -0.24 -9.98 7.70 -14.40 -0.11 -10.09 16 22 C -0.07 -3.49 11.02 85.42 0.94 -2.55 16 23 N -0.30 -17.21 10.42 -56.45 -0.59 -17.79 16 24 H 0.28 14.22 8.31 -92.70 -0.77 13.45 16 25 H 0.19 6.75 8.06 -2.91 -0.02 6.72 16 26 H 0.45 13.57 8.95 -92.71 -0.83 12.74 16 27 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 29 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 31 H 0.16 8.08 5.89 -2.91 -0.02 8.07 16 Total: -1.00 -71.79 281.65 2.49 -69.30 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.36 Total: 31.28 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 6.42 Total: -9.48 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -6.22 Total: -120.27 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.11 Total: -10.09 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Total: -71.79 2.49 -69.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142799651.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.002 kcal (2) G-P(sol) polarization free energy of solvation -71.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds