Wall clock time and date at job start Mon Mar 30 2020 00:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99705 * 2 1 4 4 H 1.48504 * 109.46757 * 240.00021 * 3 2 1 5 5 H 1.48495 * 109.46824 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47105 * 119.99729 * 3 2 1 7 7 C 1.37878 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46700 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 C 1.33394 * 122.54017 * 90.02609 * 14 13 12 16 16 S 1.75885 * 109.59629 * 179.97438 * 15 14 13 17 17 C 1.75888 * 90.96849 * 359.97438 * 16 15 14 18 18 N 1.48033 * 125.20388 * 179.97438 * 17 16 15 19 19 O 1.21795 * 120.00285 * 180.02562 * 18 17 16 20 20 O 1.21805 * 119.99928 * 0.02562 * 18 17 16 21 21 C 1.33393 * 109.59291 * 359.75779 * 17 16 15 22 22 H 0.97002 * 120.00555 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47135 * 59.98994 * 9 7 2 24 24 H 1.09005 * 109.46741 * 299.99708 * 9 7 2 25 25 H 1.08995 * 109.47485 * 60.00257 * 10 9 7 26 26 H 1.08996 * 109.47010 * 299.99049 * 10 9 7 27 27 H 1.09004 * 109.46889 * 60.00145 * 11 10 9 28 28 H 1.08995 * 109.47384 * 299.99786 * 11 10 9 29 29 H 1.00901 * 111.00067 * 303.95263 * 12 11 10 30 30 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 31 31 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 32 32 H 1.08007 * 125.19815 * 359.97438 * 15 14 13 33 33 H 1.07999 * 122.53886 * 180.24070 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7349 -7.3950 0.0005 14 6 2.7444 -8.5138 0.0005 15 6 3.2247 -9.0469 1.1251 16 16 4.3726 -10.3199 0.7311 17 6 4.1279 -10.0491 -0.9895 18 7 4.8020 -10.7961 -2.0753 19 8 4.5613 -10.5289 -3.2390 20 8 5.5975 -11.6781 -1.8050 21 6 3.2385 -9.0708 -1.1663 22 1 -0.4851 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8895 24 1 0.6242 -2.5567 0.8904 25 1 2.8721 -3.6043 0.8905 26 1 2.8720 -3.6043 -0.8895 27 1 0.8535 -5.0450 -0.8886 28 1 0.8542 -5.0446 0.8914 29 1 3.0694 -6.0365 -0.7813 30 1 1.1103 -7.4695 0.8907 31 1 1.1097 -7.4692 -0.8892 32 1 2.9505 -8.7431 2.1246 33 1 2.9300 -8.7363 -2.1458 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163864570.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:59 Heat of formation + Delta-G solvation = 18.632917 kcal Electronic energy + Delta-G solvation = -17041.518719 eV Core-core repulsion = 14003.972316 eV Total energy + Delta-G solvation = -3037.546403 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.33563 -39.30416 -36.84191 -36.20380 -33.59379 -31.92828 -30.71033 -27.40485 -26.97292 -25.12709 -22.85002 -22.27587 -20.45656 -20.07726 -19.65865 -18.57430 -17.88146 -17.17934 -16.37751 -15.69359 -15.13731 -14.89979 -14.41249 -13.87177 -13.79442 -13.41957 -13.06738 -12.49433 -12.11638 -11.91710 -11.87620 -11.67423 -11.49829 -11.47010 -11.37413 -10.86303 -10.66313 -10.58733 -9.89957 -9.77664 -9.45378 -9.22283 -9.09921 -8.41825 -8.37562 -6.03335 -4.05796 -0.67567 0.19452 0.80829 0.96060 1.32752 1.84533 3.31384 3.35731 3.38332 4.10802 4.28984 4.39333 4.47811 4.59286 4.88853 5.02586 5.19698 5.32563 5.49515 5.60612 5.66736 5.79033 5.92838 6.19316 6.58604 6.62547 7.04260 7.11296 7.27215 7.37743 7.62897 7.76893 7.96291 8.39228 9.01104 9.58524 11.08035 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035227 B = 0.002690 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.653848 B =10406.098586 C =10662.869541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.058 3.942 12 N -0.688 5.688 13 C 0.114 3.886 14 C -0.111 4.111 15 C -0.142 4.142 16 S 0.236 5.764 17 C -0.186 4.186 18 N 0.062 4.938 19 O -0.147 6.147 20 O -0.160 6.160 21 C -0.021 4.021 22 H 0.261 0.739 23 H 0.014 0.986 24 H 0.016 0.984 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.340 0.660 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.191 0.809 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.154 -22.043 1.720 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.319 5.319 13 C -0.017 4.017 14 C -0.123 4.123 15 C -0.281 4.281 16 S 0.502 5.498 17 C -0.387 4.387 18 N 0.582 4.418 19 O -0.364 6.364 20 O -0.374 6.374 21 C -0.058 4.058 22 H 0.071 0.929 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.158 0.842 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.208 0.792 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.695 -22.602 3.802 23.617 hybrid contribution -0.593 1.729 -2.042 2.740 sum 5.102 -20.874 1.760 21.560 Atomic orbital electron populations 1.69948 1.06074 1.26757 1.50822 1.25027 0.94853 0.99287 0.95288 0.86650 0.79585 0.83071 0.78660 1.20229 1.21276 1.20203 1.21212 0.93031 0.91056 1.50669 0.92715 1.19055 0.93964 0.91320 0.97146 1.21634 0.99250 0.92829 1.00838 1.22184 0.94019 0.90505 1.00268 1.60656 1.20465 1.00657 1.50083 1.20651 0.92342 0.86402 1.02342 1.18795 1.02504 1.00636 0.90344 1.26322 0.99185 0.98457 1.04112 1.84706 1.40318 1.33435 0.91316 1.25892 1.11091 1.08095 0.93619 1.42522 0.98976 0.99308 1.00951 1.94583 1.68025 1.71341 1.02483 1.94578 1.29496 1.23822 1.89549 1.20337 0.91769 0.91378 1.02320 0.92925 0.96773 0.96557 0.92497 0.93567 0.95354 0.91151 0.84248 0.89262 0.93595 0.79209 0.81575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.11 5.41 -26.73 -0.14 -2.25 16 11 C 0.06 0.90 5.69 -3.82 -0.02 0.88 16 12 N -0.69 -8.50 6.49 -115.05 -0.75 -9.24 16 13 C 0.11 1.06 5.94 -4.97 -0.03 1.04 16 14 C -0.11 -0.93 5.31 -106.25 -0.56 -1.49 16 15 C -0.14 -0.99 10.98 29.04 0.32 -0.68 16 16 S 0.24 1.79 23.14 -107.50 -2.49 -0.70 16 17 C -0.19 -1.89 7.50 -11.32 -0.08 -1.97 16 18 N 0.06 0.78 4.45 33.44 0.15 0.92 16 19 O -0.15 -1.93 18.94 -29.46 -0.56 -2.49 16 20 O -0.16 -2.09 19.08 -29.46 -0.56 -2.65 16 21 C -0.02 -0.19 9.60 -41.21 -0.40 -0.59 16 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.34 4.08 8.72 -39.29 -0.34 3.73 16 30 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 31 H 0.05 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.19 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.17 1.35 8.01 -52.49 -0.42 0.92 16 LS Contribution 312.17 15.07 4.70 4.70 Total: -1.00 -30.97 312.17 -9.37 -40.33 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -4.11 Total: -3.32 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.47 Total: -18.07 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.14 Total: -34.31 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -1.12 Total: -5.14 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.49 Total: -0.70 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.97 -9.37 -40.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163864570.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.966 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds