Wall clock time and date at job start Mon Mar 30 2020 00:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99705 * 2 1 4 4 H 1.48504 * 109.46757 * 240.00021 * 3 2 1 5 5 H 1.48495 * 109.46824 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47105 * 119.99729 * 3 2 1 7 7 C 1.37878 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46700 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 C 1.33394 * 122.54017 * 90.02609 * 14 13 12 16 16 S 1.75885 * 109.59629 * 179.97438 * 15 14 13 17 17 C 1.75888 * 90.96849 * 359.97438 * 16 15 14 18 18 N 1.48033 * 125.20388 * 179.97438 * 17 16 15 19 19 O 1.21795 * 120.00285 * 180.02562 * 18 17 16 20 20 O 1.21805 * 119.99928 * 0.02562 * 18 17 16 21 21 C 1.33393 * 109.59291 * 359.75779 * 17 16 15 22 22 H 0.97002 * 120.00555 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47135 * 59.98994 * 9 7 2 24 24 H 1.09005 * 109.46741 * 299.99708 * 9 7 2 25 25 H 1.08995 * 109.47485 * 60.00257 * 10 9 7 26 26 H 1.08996 * 109.47010 * 299.99049 * 10 9 7 27 27 H 1.09004 * 109.46889 * 60.00145 * 11 10 9 28 28 H 1.08995 * 109.47384 * 299.99786 * 11 10 9 29 29 H 1.00901 * 111.00067 * 303.95263 * 12 11 10 30 30 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 31 31 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 32 32 H 1.08007 * 125.19815 * 359.97438 * 15 14 13 33 33 H 1.07999 * 122.53886 * 180.24070 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7349 -7.3950 0.0005 14 6 2.7444 -8.5138 0.0005 15 6 3.2247 -9.0469 1.1251 16 16 4.3726 -10.3199 0.7311 17 6 4.1279 -10.0491 -0.9895 18 7 4.8020 -10.7961 -2.0753 19 8 4.5613 -10.5289 -3.2390 20 8 5.5975 -11.6781 -1.8050 21 6 3.2385 -9.0708 -1.1663 22 1 -0.4851 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8895 24 1 0.6242 -2.5567 0.8904 25 1 2.8721 -3.6043 0.8905 26 1 2.8720 -3.6043 -0.8895 27 1 0.8535 -5.0450 -0.8886 28 1 0.8542 -5.0446 0.8914 29 1 3.0694 -6.0365 -0.7813 30 1 1.1103 -7.4695 0.8907 31 1 1.1097 -7.4692 -0.8892 32 1 2.9505 -8.7431 2.1246 33 1 2.9300 -8.7363 -2.1458 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163864570.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:59 Heat of formation + Delta-G solvation = -0.160502 kcal Electronic energy + Delta-G solvation = -17042.333663 eV Core-core repulsion = 14003.972316 eV Total energy + Delta-G solvation = -3038.361347 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.22652 -40.02024 -37.78011 -37.39149 -35.39316 -33.35709 -31.87892 -28.81619 -27.75727 -26.53407 -24.11443 -23.41296 -21.98504 -20.84380 -20.57707 -19.37880 -18.76917 -18.48227 -17.87882 -16.76273 -16.57346 -16.00266 -15.74230 -15.09542 -14.57343 -14.31808 -14.19598 -13.98968 -13.45983 -13.17511 -13.08382 -12.83874 -12.69213 -12.54028 -12.47117 -12.45033 -12.28850 -12.10584 -11.51306 -11.39080 -11.13563 -10.54443 -10.54295 -9.87562 -9.39187 -8.20235 -6.30933 -1.46970 -0.48706 -0.00475 0.27754 0.61097 1.14766 1.40400 1.42880 1.50875 2.41018 3.13115 3.26295 3.57044 3.69873 3.93517 4.16975 4.31120 4.32820 4.47239 4.55221 4.74657 4.81698 4.98154 5.00147 5.06507 5.12485 5.26056 5.52553 5.76799 5.87158 5.98650 6.27348 6.30475 6.38676 6.86448 7.38427 8.91281 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035227 B = 0.002690 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.653848 B =10406.098586 C =10662.869541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.094 4.094 11 C 0.072 3.928 12 N -0.688 5.688 13 C 0.117 3.883 14 C -0.123 4.123 15 C -0.119 4.119 16 S 0.270 5.730 17 C -0.216 4.216 18 N 0.065 4.935 19 O -0.174 6.174 20 O -0.178 6.178 21 C -0.013 4.013 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.006 1.006 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.343 0.657 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.219 0.781 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.780 -22.175 2.885 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.132 4.132 11 C -0.056 4.056 12 N -0.319 5.319 13 C -0.014 4.014 14 C -0.134 4.134 15 C -0.258 4.258 16 S 0.536 5.464 17 C -0.417 4.417 18 N 0.579 4.421 19 O -0.387 6.387 20 O -0.390 6.390 21 C -0.050 4.050 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.012 0.988 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.160 0.840 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.235 0.765 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.345 -22.769 4.932 24.146 hybrid contribution -0.824 1.749 -2.303 3.007 sum 5.521 -21.021 2.629 21.892 Atomic orbital electron populations 1.70076 1.07729 1.27831 1.51714 1.25960 0.95764 1.03287 0.94772 0.85540 0.78324 0.78266 0.79175 1.19283 1.20827 1.19168 1.21702 0.93535 0.92585 1.50504 0.92361 1.18966 0.94440 0.92980 0.94875 1.21381 0.98037 0.93154 1.00666 1.21849 0.93826 0.89633 1.00341 1.60563 1.19967 1.01056 1.50359 1.20671 0.92501 0.84882 1.03347 1.18633 1.03271 1.01063 0.90463 1.26750 0.97225 0.96820 1.04979 1.84689 1.39674 1.32945 0.89055 1.26023 1.12411 1.09145 0.94114 1.42784 0.98771 0.99193 1.01363 1.94565 1.68671 1.71875 1.03604 1.94553 1.30247 1.24602 1.89631 1.20472 0.90927 0.90644 1.03001 0.92759 0.99060 0.98760 0.92825 0.93430 0.95444 0.91059 0.83972 0.87985 0.92944 0.76469 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -30.75 9.11 25.60 0.23 -30.52 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.28 4.97 29.85 0.15 1.43 16 10 C -0.09 -3.65 5.41 30.59 0.17 -3.48 16 11 C 0.07 2.13 5.69 86.30 0.49 2.62 16 12 N -0.69 -15.41 6.49 -517.92 -3.36 -18.78 16 13 C 0.12 1.85 5.94 85.55 0.51 2.36 16 14 C -0.12 -1.71 5.31 -20.92 -0.11 -1.82 16 15 C -0.12 -1.24 10.98 66.72 0.73 -0.51 16 16 S 0.27 3.44 23.14 -56.49 -1.31 2.14 16 17 C -0.22 -4.12 7.50 80.83 0.61 -3.51 16 18 N 0.06 1.61 4.45 -48.12 -0.21 1.39 16 19 O -0.17 -4.69 18.94 18.89 0.36 -4.33 16 20 O -0.18 -4.67 19.08 18.88 0.36 -4.31 16 21 C -0.01 -0.21 9.60 21.22 0.20 -0.01 16 22 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 23 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 24 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.34 7.49 8.72 -89.69 -0.78 6.71 16 30 H 0.10 1.40 8.12 -2.39 -0.02 1.38 16 31 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 32 H 0.22 1.07 8.06 -2.91 -0.02 1.05 16 33 H 0.17 2.57 8.01 -2.91 -0.02 2.55 16 Total: -1.00 -67.13 312.17 1.93 -65.20 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 0.34 Total: 1.76 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 3.44 Total: -32.98 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -3.29 Total: -73.35 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.72 Total: -8.64 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.31 Total: 2.14 kcal Total: -67.13 1.93 -65.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163864570.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.039 kcal (2) G-P(sol) polarization free energy of solvation -67.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds