Wall clock time and date at job start Mon Mar 30 2020 01:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00113 * 2 1 4 4 O 1.20834 * 119.99740 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00473 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47253 * 180.02562 * 5 3 2 7 7 C 1.36940 * 120.00151 * 95.75489 * 6 5 3 8 8 H 1.08001 * 119.99843 * 155.12161 * 7 6 5 9 9 C 1.38815 * 120.00077 * 335.12091 * 7 6 5 10 10 N 1.31622 * 119.99508 * 353.45087 * 9 7 6 11 11 Si 1.86797 * 120.00036 * 173.44802 * 9 7 6 12 12 H 1.48500 * 109.47109 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46967 * 119.99833 * 11 9 7 14 14 H 1.48495 * 109.47304 * 239.99984 * 11 9 7 15 15 C 1.46502 * 120.00101 * 275.75425 * 6 5 3 16 16 C 1.50709 * 109.46856 * 89.99810 * 15 6 5 17 17 C 1.33643 * 122.74227 * 94.73549 * 16 15 6 18 18 S 1.76204 * 107.91766 * 179.97438 * 17 16 15 19 19 C 1.70974 * 90.28285 * 0.27362 * 18 17 16 20 20 C 1.50703 * 124.91582 * 179.83935 * 19 18 17 21 21 N 1.29027 * 110.16830 * 359.84184 * 19 18 17 22 22 H 1.09003 * 109.46810 * 299.99752 * 1 2 3 23 23 H 1.08996 * 109.47359 * 60.00111 * 1 2 3 24 24 H 1.09001 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47304 * 59.99634 * 5 3 2 26 26 H 1.09006 * 109.47156 * 299.99679 * 5 3 2 27 27 H 0.97005 * 119.99235 * 180.02562 * 10 9 7 28 28 H 1.08999 * 109.47338 * 209.99866 * 15 6 5 29 29 H 1.08996 * 109.46698 * 330.00485 * 15 6 5 30 30 H 1.07995 * 126.04670 * 0.03936 * 17 16 15 31 31 H 1.09006 * 109.47104 * 270.00093 * 20 19 18 32 32 H 1.08996 * 109.47299 * 30.00475 * 20 19 18 33 33 H 1.08999 * 109.47291 * 150.00441 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.2903 3.3020 1.1804 8 1 4.9547 4.1534 1.1843 9 6 3.7491 2.8384 2.3716 10 7 2.8411 1.8856 2.3551 11 14 4.3094 3.5666 3.9980 12 1 5.3302 4.6151 3.7453 13 1 3.1460 4.1678 4.6982 14 1 4.8971 2.4965 4.8433 15 6 4.0668 3.4192 -1.2617 16 6 2.7402 4.0734 -1.5511 17 6 2.4677 5.3366 -1.2106 18 16 0.8228 5.6954 -1.7306 19 6 0.6625 4.1086 -2.3468 20 6 -0.5727 3.5643 -3.0171 21 7 1.7520 3.4447 -2.1548 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.9557 0.7810 -0.8908 26 1 3.9564 0.7807 0.8892 27 1 2.4627 1.5619 3.1876 28 1 4.8396 4.1839 -1.1834 29 1 4.3165 2.7314 -2.0696 30 1 3.1376 6.0176 -0.7068 31 1 -1.2247 3.1152 -2.2678 32 1 -1.1007 4.3749 -3.5193 33 1 -0.2861 2.8091 -3.7489 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177618529.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:11 Heat of formation + Delta-G solvation = -25.302529 kcal Electronic energy + Delta-G solvation = -19682.461855 eV Core-core repulsion = 16643.010268 eV Total energy + Delta-G solvation = -3039.451587 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81338 -40.24515 -37.60900 -36.22962 -33.87256 -32.60033 -30.12037 -29.00783 -27.83846 -27.61033 -24.54240 -22.92421 -21.46007 -20.38823 -19.00835 -18.23564 -17.82764 -17.26953 -16.86618 -16.49665 -16.02555 -15.70088 -15.36197 -14.93992 -14.63093 -14.10581 -13.85975 -13.78004 -13.37676 -13.23584 -12.94480 -12.85254 -12.76804 -12.55705 -12.38728 -12.11711 -11.94675 -11.89927 -11.24311 -10.92936 -10.52439 -10.34756 -10.00733 -9.38957 -8.89340 -7.95891 -5.39486 0.07757 0.73958 1.02357 1.44454 1.46723 1.55694 2.15102 2.25783 2.43393 2.58055 3.31456 3.47607 3.69624 4.26787 4.41761 4.44937 4.48063 4.54987 4.59508 4.61160 4.66730 4.71465 4.85869 5.03898 5.06944 5.17293 5.21288 5.54284 5.60218 6.10874 6.24765 7.01447 7.17919 7.61629 7.83428 8.16636 9.11590 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017054 B = 0.009327 C = 0.007262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.413669 B = 3001.186796 C = 3854.753945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.394 6.394 3 C 0.470 3.530 4 O -0.515 6.515 5 C 0.195 3.805 6 N -0.567 5.567 7 C -0.255 4.255 8 H 0.084 0.916 9 C -0.043 4.043 10 N -0.927 5.927 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.306 1.306 14 H -0.288 1.288 15 C 0.206 3.794 16 C 0.065 3.935 17 C -0.269 4.269 18 S 0.087 5.913 19 C 0.037 3.963 20 C -0.066 4.066 21 N -0.470 5.470 22 H 0.028 0.972 23 H 0.048 0.952 24 H 0.120 0.880 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.247 0.753 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.170 0.830 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.660 1.693 -9.326 10.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.312 6.312 3 C 0.310 3.690 4 O -0.400 6.400 5 C 0.066 3.934 6 N -0.286 5.286 7 C -0.385 4.385 8 H 0.102 0.898 9 C -0.238 4.238 10 N -0.573 5.573 11 Si 0.802 3.198 12 H -0.186 1.186 13 H -0.234 1.234 14 H -0.215 1.215 15 C 0.078 3.922 16 C -0.068 4.068 17 C -0.409 4.409 18 S 0.340 5.660 19 C -0.242 4.242 20 C -0.126 4.126 21 N -0.185 5.185 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.138 0.862 25 H 0.090 0.910 26 H 0.109 0.891 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.188 0.812 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.529 2.265 -9.319 10.606 hybrid contribution 0.328 0.028 1.776 1.807 sum -4.201 2.292 -7.543 8.933 Atomic orbital electron populations 1.22990 0.77996 1.03516 1.00134 1.86475 1.22813 1.36131 1.85801 1.25154 0.93587 0.80277 0.69966 1.90429 1.66931 1.36958 1.45723 1.20188 0.85729 0.86341 1.01146 1.44219 1.74589 1.06796 1.02985 1.19613 1.21158 1.13458 0.84265 0.89815 1.25752 0.96906 0.99570 1.01570 1.69840 1.30201 1.31515 1.25791 0.85112 0.76902 0.77966 0.79818 1.18615 1.23427 1.21461 1.19892 0.89314 0.95065 0.87950 1.21443 0.98820 0.90421 0.96122 1.26734 0.99537 1.01925 1.12693 1.83126 1.11764 1.15905 1.55208 1.27408 0.99317 0.94445 1.03013 1.20438 0.90075 1.02246 0.99866 1.65958 1.00360 1.35764 1.16467 0.95283 0.93333 0.86156 0.90967 0.89077 0.94366 0.89838 0.91132 0.81214 0.90509 0.87888 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.75 10.56 113.37 1.20 2.94 16 2 O -0.39 -17.79 10.57 -51.42 -0.54 -18.34 16 3 C 0.47 23.47 5.93 71.23 0.42 23.89 16 4 O -0.52 -27.97 12.16 21.94 0.27 -27.70 16 5 C 0.19 9.33 5.52 85.63 0.47 9.80 16 6 N -0.57 -27.40 2.16 -710.67 -1.53 -28.93 16 7 C -0.26 -13.27 9.66 84.03 0.81 -12.45 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 C -0.04 -2.30 5.17 84.86 0.44 -1.87 16 10 N -0.93 -53.10 8.66 21.65 0.19 -52.91 16 11 Si 0.97 44.55 29.56 68.60 2.03 46.58 16 12 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 13 H -0.31 -14.70 7.11 99.48 0.71 -14.00 16 14 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 15 C 0.21 8.50 6.14 85.64 0.53 9.03 16 16 C 0.07 2.76 5.06 41.53 0.21 2.97 16 17 C -0.27 -10.63 11.12 66.78 0.74 -9.89 16 18 S 0.09 2.95 23.18 -56.49 -1.31 1.64 16 19 C 0.04 1.34 7.32 88.52 0.65 1.99 16 20 C -0.07 -1.73 10.46 71.24 0.75 -0.98 16 21 N -0.47 -19.73 8.45 -179.40 -1.52 -21.25 16 22 H 0.03 1.15 8.13 -2.39 -0.02 1.13 16 23 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 24 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 25 H 0.07 3.00 7.98 -2.39 -0.02 2.99 16 26 H 0.09 4.73 6.52 -2.38 -0.02 4.72 16 27 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 28 H 0.08 3.10 8.00 -2.39 -0.02 3.08 16 29 H 0.07 2.66 7.95 -2.39 -0.02 2.64 16 30 H 0.17 6.23 8.06 -2.91 -0.02 6.20 16 31 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -67.87 296.47 4.91 -62.96 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.11 Total: 12.50 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: 6.21 Total: 25.44 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -2.86 Total: -103.09 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -0.28 Total: -46.03 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.31 Total: 1.64 kcal Total: -67.87 4.91 -62.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177618529.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.660 kcal (2) G-P(sol) polarization free energy of solvation -67.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds