Wall clock time and date at job start Mon Mar 30 2020 01:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47354 * 2 1 4 4 C 1.50703 * 109.47196 * 119.99944 * 2 1 3 5 5 H 1.08001 * 120.00038 * 120.00199 * 4 2 1 6 6 C 1.37882 * 119.99990 * 299.99756 * 4 2 1 7 7 N 1.31516 * 119.99661 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00025 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47196 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47331 * 119.99982 * 8 6 4 11 11 H 1.48495 * 109.47350 * 240.00225 * 8 6 4 12 12 N 1.46499 * 109.47014 * 239.99540 * 2 1 3 13 13 S 1.65601 * 119.99735 * 95.00268 * 12 2 1 14 14 O 1.42100 * 106.40178 * 311.45788 * 13 12 2 15 15 O 1.42098 * 106.40343 * 178.54196 * 13 12 2 16 16 C 1.76195 * 107.22082 * 64.99823 * 13 12 2 17 17 C 1.38293 * 119.92587 * 90.00142 * 16 13 12 18 18 C 1.38103 * 120.07544 * 180.02562 * 17 16 13 19 19 C 1.38914 * 119.92585 * 0.02562 * 18 17 16 20 20 N 1.39671 * 120.07130 * 179.97438 * 19 18 17 21 21 C 1.38912 * 119.84788 * 0.25342 * 19 18 17 22 22 C 1.38098 * 119.92495 * 359.48977 * 21 19 18 23 23 H 1.09005 * 109.46829 * 300.00365 * 1 2 3 24 24 H 1.08991 * 109.46970 * 60.00150 * 1 2 3 25 25 H 1.08993 * 109.47257 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99562 * 180.02562 * 7 6 4 27 27 H 0.96999 * 120.00356 * 275.00037 * 12 2 1 28 28 H 1.08001 * 119.95790 * 359.97438 * 17 16 13 29 29 H 1.07999 * 120.03416 * 179.97438 * 18 17 16 30 30 H 0.97001 * 120.00529 * 0.02562 * 20 19 18 31 31 H 0.97005 * 119.99745 * 179.72366 * 20 19 18 32 32 H 1.08005 * 120.03088 * 179.72680 * 21 19 18 33 33 H 1.08005 * 119.96252 * 180.25688 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1464 -2.2869 3.6038 10 1 3.1467 -0.1873 4.8165 11 1 1.1662 -1.5865 4.8161 12 7 2.0183 -0.6907 -1.1961 13 16 2.4122 0.1770 -2.5505 14 8 1.3247 1.0591 -2.7922 15 8 2.8776 -0.7636 -3.5085 16 6 3.7927 1.1909 -2.1372 17 6 5.0780 0.7138 -2.3189 18 6 6.1623 1.5056 -1.9955 19 6 5.9608 2.7824 -1.4868 20 7 7.0553 3.5856 -1.1582 21 6 4.6685 3.2563 -1.3001 22 6 3.5887 2.4612 -1.6305 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 0.7089 1.1614 3.4844 27 1 2.1110 -1.6563 -1.1948 28 1 5.2338 -0.2795 -2.7133 29 1 7.1657 1.1322 -2.1373 30 1 7.9572 3.2522 -1.2855 31 1 6.9134 4.4785 -0.8068 32 1 4.5084 4.2469 -0.9006 33 1 2.5837 2.8307 -1.4895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185930502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:26 Heat of formation + Delta-G solvation = -81.070955 kcal Electronic energy + Delta-G solvation = -18860.004844 eV Core-core repulsion = 15818.134956 eV Total energy + Delta-G solvation = -3041.869888 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.25268 -38.19591 -37.18106 -36.78126 -35.58548 -34.06678 -31.94054 -30.06753 -29.85001 -27.19885 -23.95235 -23.51506 -22.76439 -20.41225 -19.15104 -18.72010 -17.92610 -17.86102 -17.63706 -17.03216 -16.27975 -15.43901 -15.37634 -14.99677 -14.52488 -14.35600 -14.32395 -14.15233 -13.86337 -13.44774 -13.17893 -13.01539 -12.94075 -12.82429 -12.31143 -12.21555 -12.11010 -12.03741 -11.88466 -11.76944 -11.03535 -10.56027 -10.04775 -9.98163 -8.78111 -8.10542 -6.24266 -0.33044 0.14550 0.44304 1.44658 1.47634 1.58072 2.26135 2.47418 2.66320 2.86893 3.00557 3.19235 3.53598 3.88049 4.00120 4.35743 4.54082 4.59455 4.73055 4.96030 4.99459 5.14403 5.15229 5.20589 5.21693 5.29870 5.63094 5.78336 5.80642 6.06499 6.15428 6.41982 6.47874 6.87146 6.90356 7.44911 8.95055 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.007811 C = 0.006058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.670524 B = 3583.799128 C = 4620.541457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.279 3.721 3 H 0.027 0.973 4 C -0.536 4.536 5 H 0.067 0.933 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.960 3.040 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.281 1.281 12 N -1.103 6.103 13 S 2.707 3.293 14 O -1.000 7.000 15 O -0.998 6.998 16 C -0.739 4.739 17 C 0.015 3.985 18 C -0.222 4.222 19 C 0.267 3.733 20 N -0.850 5.850 21 C -0.226 4.226 22 C 0.012 3.988 23 H 0.071 0.929 24 H 0.028 0.972 25 H 0.037 0.963 26 H 0.264 0.736 27 H 0.415 0.585 28 H 0.146 0.854 29 H 0.159 0.841 30 H 0.414 0.586 31 H 0.412 0.588 32 H 0.147 0.853 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.282 4.251 -5.682 14.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.173 3.827 3 H 0.044 0.956 4 C -0.575 4.575 5 H 0.085 0.915 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.785 3.215 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.863 5.863 13 S 2.801 3.199 14 O -0.990 6.990 15 O -0.988 6.988 16 C -0.832 4.832 17 C -0.006 4.006 18 C -0.245 4.245 19 C 0.156 3.844 20 N -0.388 5.388 21 C -0.250 4.250 22 C -0.009 4.009 23 H 0.090 0.910 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.249 0.751 28 H 0.164 0.836 29 H 0.177 0.823 30 H 0.245 0.755 31 H 0.242 0.758 32 H 0.165 0.835 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.754 4.524 -6.356 14.107 hybrid contribution 0.664 -0.181 1.459 1.613 sum 12.417 4.344 -4.897 14.037 Atomic orbital electron populations 1.22153 0.98621 0.99920 1.00570 1.18250 0.90997 0.91696 0.81737 0.95569 1.21641 1.31711 1.13282 0.90886 0.91471 1.25657 0.95113 0.95696 1.01735 1.70007 1.37102 1.23832 1.24336 0.85484 0.78073 0.78660 0.79250 1.19035 1.20810 1.20736 1.55389 1.81615 1.18882 1.30377 1.00896 0.73794 0.72890 0.72297 1.93493 1.53191 1.67533 1.84769 1.93471 1.82837 1.62677 1.59826 1.30280 1.16150 1.11517 1.25235 1.20837 0.90299 0.99165 0.90277 1.20954 1.00244 0.94218 1.09093 1.18103 0.88327 0.90298 0.87630 1.42585 1.05986 1.18482 1.71707 1.20886 0.91010 1.02664 1.10416 1.20748 0.99887 0.91311 0.88951 0.91002 0.95296 0.94433 0.92622 0.75058 0.83619 0.82323 0.75528 0.75780 0.83498 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.59 9.29 71.98 0.67 -6.92 16 2 C 0.28 13.72 2.76 44.25 0.12 13.84 16 3 H 0.03 1.38 7.22 -2.39 -0.02 1.36 16 4 C -0.54 -27.86 8.76 25.60 0.22 -27.63 16 5 H 0.07 3.37 7.81 -2.91 -0.02 3.35 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.91 -50.21 11.32 21.45 0.24 -49.96 16 8 Si 0.96 41.61 29.54 68.60 2.03 43.63 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 12 N -1.10 -46.12 5.46 -172.52 -0.94 -47.06 16 13 S 2.71 107.91 5.65 -56.49 -0.32 107.59 16 14 O -1.00 -45.20 16.54 -128.00 -2.12 -47.31 16 15 O -1.00 -40.60 17.27 -128.00 -2.21 -42.81 16 16 C -0.74 -26.69 5.82 22.29 0.13 -26.56 16 17 C 0.01 0.45 9.51 22.25 0.21 0.66 16 18 C -0.22 -5.50 9.90 22.40 0.22 -5.27 16 19 C 0.27 6.37 6.75 38.22 0.26 6.62 16 20 N -0.85 -12.12 9.09 -51.37 -0.47 -12.59 16 21 C -0.23 -6.43 9.90 22.40 0.22 -6.21 16 22 C 0.01 0.41 8.88 22.25 0.20 0.60 16 23 H 0.07 3.84 6.07 -2.38 -0.01 3.83 16 24 H 0.03 1.36 7.64 -2.39 -0.02 1.34 16 25 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 27 H 0.41 15.67 8.83 -96.75 -0.85 14.82 16 28 H 0.15 4.01 7.61 -2.91 -0.02 3.99 16 29 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.41 3.82 8.84 -92.71 -0.82 3.00 16 31 H 0.41 4.36 8.84 -92.70 -0.82 3.54 16 32 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.13 4.61 7.61 -2.91 -0.02 4.59 16 Total: -1.00 -68.09 296.10 -2.41 -70.50 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -1.33 Total: 27.48 kcal Atomic # 6 Polarization: -52.18 SS G_CDS: 2.70 Total: -49.47 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -1.17 Total: -109.61 kcal Atomic # 8 Polarization: -85.80 SS G_CDS: -4.33 Total: -90.13 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 107.91 SS G_CDS: -0.32 Total: 107.59 kcal Total: -68.09 -2.41 -70.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185930502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.569 kcal (2) G-P(sol) polarization free energy of solvation -68.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds