Wall clock time and date at job start Mon Mar 30 2020 01:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34817 * 117.00066 * 2 1 4 4 O 1.21565 * 120.00000 * 359.97438 * 3 2 1 5 5 C 1.47085 * 119.99951 * 179.97438 * 3 2 1 6 6 C 1.36299 * 126.13815 * 179.97438 * 5 3 2 7 7 N 1.36384 * 106.94053 * 179.97438 * 6 5 3 8 8 H 0.97001 * 126.20333 * 179.97438 * 7 6 5 9 9 C 1.36414 * 107.58457 * 0.26110 * 7 6 5 10 10 S 1.76208 * 125.58213 * 179.73453 * 9 7 6 11 11 C 1.80997 * 100.00010 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.46993 * 55.00569 * 11 10 9 13 13 C 1.52993 * 109.47347 * 295.00307 * 11 10 9 14 14 C 1.53006 * 109.46771 * 175.00077 * 11 10 9 15 15 C 1.50697 * 109.47422 * 295.00165 * 14 11 10 16 16 H 1.08002 * 119.99575 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00103 * 180.02562 * 15 14 11 18 18 N 1.31511 * 119.99781 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99849 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47175 * 89.99995 * 19 17 15 21 21 H 1.48501 * 109.47076 * 209.99774 * 19 17 15 22 22 H 1.48490 * 109.47410 * 329.99814 * 19 17 15 23 23 N 1.30951 * 108.83268 * 359.56085 * 9 7 6 24 24 H 1.09000 * 109.46824 * 60.00153 * 1 2 3 25 25 H 1.08993 * 109.47004 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47101 * 300.01081 * 1 2 3 27 27 H 1.07997 * 126.53319 * 359.97096 * 6 5 3 28 28 H 1.08996 * 109.47290 * 180.02562 * 13 11 10 29 29 H 1.09003 * 109.47622 * 300.00106 * 13 11 10 30 30 H 1.08995 * 109.47070 * 59.99821 * 13 11 10 31 31 H 1.08996 * 109.46661 * 55.00618 * 14 11 10 32 32 H 1.08998 * 109.46715 * 175.00014 * 14 11 10 33 33 H 0.97008 * 119.99866 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4020 2.2208 -0.0005 5 6 3.5329 1.2782 0.0006 6 6 4.2780 2.4195 0.0001 7 7 5.5877 2.0390 0.0015 8 1 6.3562 2.6308 0.0013 9 6 5.6207 0.6753 -0.0032 10 16 7.0781 -0.3151 -0.0102 11 6 6.3363 -1.9660 -0.0131 12 1 5.6475 -2.0533 -0.8533 13 6 5.5748 -2.1853 1.2956 14 6 7.4378 -3.0198 -0.1451 15 6 8.1073 -2.8812 -1.4880 16 1 7.7802 -2.1176 -2.1782 17 6 9.1374 -3.7292 -1.8355 18 7 9.5360 -4.6586 -0.9948 19 14 9.9678 -3.5568 -3.4999 20 1 11.1114 -2.6161 -3.3876 21 1 10.4610 -4.8844 -3.9469 22 1 8.9914 -3.0331 -4.4885 23 7 4.3919 0.2227 0.0022 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 3.9028 3.4322 -0.0011 28 1 5.1285 -3.1797 1.2941 29 1 6.2637 -2.0980 2.1359 30 1 4.7902 -1.4346 1.3896 31 1 8.1747 -2.8758 0.6450 32 1 7.0011 -4.0146 -0.0577 33 1 10.2610 -5.2550 -1.2392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193546874.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:21 Heat of formation + Delta-G solvation = -39.847187 kcal Electronic energy + Delta-G solvation = -17921.615865 eV Core-core repulsion = 14881.533574 eV Total energy + Delta-G solvation = -3040.082291 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.92376 -39.98160 -36.38320 -34.62454 -32.78701 -32.01033 -30.09851 -27.81859 -27.38897 -23.80451 -23.29082 -22.36237 -20.77446 -20.06759 -19.02777 -17.26228 -16.41114 -16.37760 -16.28254 -15.68382 -15.08343 -14.64281 -14.45505 -14.05824 -13.64056 -13.25007 -12.94655 -12.52463 -12.15132 -11.81911 -11.58158 -11.21388 -10.85173 -10.80753 -10.79276 -10.63721 -10.55256 -10.23913 -10.11811 -9.56290 -9.53192 -9.33683 -9.12835 -8.41415 -7.03668 -6.06122 -4.08531 1.28894 1.64511 2.18097 2.56972 2.87287 3.30704 3.31079 3.32752 3.37320 3.41425 4.42914 4.54446 4.90652 5.04078 5.10930 5.19469 5.31350 5.43679 5.65291 5.79182 5.91769 6.12160 6.20049 6.35839 6.60886 6.65695 6.84272 6.95231 7.50218 7.53036 7.55101 7.90274 7.91086 8.27479 8.96651 9.56024 11.04875 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026154 B = 0.004413 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.334596 B = 6343.761549 C = 6643.891625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.337 6.337 3 C 0.560 3.440 4 O -0.519 6.519 5 C -0.046 4.046 6 C 0.045 3.955 7 N -0.552 5.552 8 H 0.429 0.571 9 C 0.209 3.791 10 S 0.000 6.000 11 C -0.048 4.048 12 H 0.092 0.908 13 C -0.147 4.147 14 C 0.036 3.964 15 C -0.523 4.523 16 H 0.064 0.936 17 C 0.061 3.939 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 N -0.444 5.444 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.194 0.806 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.041 0.959 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 12.361 3.576 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.252 6.252 3 C 0.405 3.595 4 O -0.408 6.408 5 C -0.175 4.175 6 C -0.098 4.098 7 N -0.158 5.158 8 H 0.269 0.731 9 C -0.164 4.164 10 S 0.231 5.769 11 C -0.177 4.177 12 H 0.110 0.890 13 C -0.206 4.206 14 C -0.003 4.003 15 C -0.562 4.562 16 H 0.082 0.918 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.197 1.197 23 N -0.168 5.168 24 H 0.080 0.920 25 H 0.120 0.880 26 H 0.080 0.920 27 H 0.211 0.789 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.531 11.928 3.595 16.313 hybrid contribution -0.392 0.850 -0.956 1.338 sum -10.924 12.777 2.639 17.016 Atomic orbital electron populations 1.23285 0.76452 1.03779 1.02290 1.86722 1.22877 1.31917 1.83678 1.19643 0.86675 0.81422 0.71784 1.90844 1.66087 1.36114 1.47795 1.19399 0.90938 0.90614 1.16568 1.22669 0.82704 1.00001 1.04413 1.43311 1.08061 1.07509 1.56915 0.73109 1.26310 1.00176 0.84187 1.05750 1.86114 0.97796 1.01451 1.91513 1.23599 1.01679 0.91437 1.01010 0.88964 1.22127 1.00180 1.02340 0.95992 1.19117 0.91301 0.91905 0.97996 1.21270 1.17130 1.16617 1.01148 0.91817 1.24981 0.96898 0.95098 0.97122 1.69955 1.28399 1.19252 1.35633 0.86585 0.79801 0.77357 0.84285 1.20596 1.21259 1.19741 1.71373 0.97560 1.28533 1.19381 0.91969 0.87972 0.91998 0.78921 0.92083 0.92804 0.91444 0.95517 0.94113 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.57 101.05 1.07 1.43 16 2 O -0.34 -4.96 10.58 -40.81 -0.43 -5.39 16 3 C 0.56 8.59 7.95 34.32 0.27 8.86 16 4 O -0.52 -8.15 16.67 -19.32 -0.32 -8.48 16 5 C -0.05 -0.72 7.00 -83.09 -0.58 -1.30 16 6 C 0.04 0.54 11.76 -16.23 -0.19 0.35 16 7 N -0.55 -6.62 6.16 -12.55 -0.08 -6.70 16 8 H 0.43 3.59 8.96 -40.82 -0.37 3.22 16 9 C 0.21 3.38 7.95 -88.73 -0.71 2.67 16 10 S 0.00 0.01 21.06 -107.50 -2.26 -2.26 16 11 C -0.05 -0.98 2.26 -26.73 -0.06 -1.04 16 12 H 0.09 1.98 8.14 -51.92 -0.42 1.56 16 13 C -0.15 -2.65 9.01 37.15 0.33 -2.31 16 14 C 0.04 0.87 4.44 -27.88 -0.12 0.75 16 15 C -0.52 -14.05 8.53 -34.44 -0.29 -14.34 16 16 H 0.06 1.69 7.60 -52.49 -0.40 1.29 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 19 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 N -0.44 -7.79 8.76 -9.96 -0.09 -7.87 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.19 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.20 5.87 -51.93 -0.30 0.90 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 306.22 15.07 4.61 4.61 Total: -1.00 -32.01 306.22 -7.24 -39.25 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.01 Total: -0.81 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.38 Total: -3.36 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.57 Total: -39.73 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.75 Total: -13.87 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.26 Total: -2.26 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.01 -7.24 -39.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193546874.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.598 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds