Wall clock time and date at job start Mon Mar 30 2020 01:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34817 * 117.00066 * 2 1 4 4 O 1.21565 * 120.00000 * 359.97438 * 3 2 1 5 5 C 1.47085 * 119.99951 * 179.97438 * 3 2 1 6 6 C 1.36299 * 126.13815 * 179.97438 * 5 3 2 7 7 N 1.36384 * 106.94053 * 179.97438 * 6 5 3 8 8 H 0.97001 * 126.20333 * 179.97438 * 7 6 5 9 9 C 1.36414 * 107.58457 * 0.26110 * 7 6 5 10 10 S 1.76208 * 125.58213 * 179.73453 * 9 7 6 11 11 C 1.80997 * 100.00010 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.46993 * 55.00569 * 11 10 9 13 13 C 1.52993 * 109.47347 * 295.00307 * 11 10 9 14 14 C 1.53006 * 109.46771 * 175.00077 * 11 10 9 15 15 C 1.50697 * 109.47422 * 295.00165 * 14 11 10 16 16 H 1.08002 * 119.99575 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00103 * 180.02562 * 15 14 11 18 18 N 1.31511 * 119.99781 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99849 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47175 * 89.99995 * 19 17 15 21 21 H 1.48501 * 109.47076 * 209.99774 * 19 17 15 22 22 H 1.48490 * 109.47410 * 329.99814 * 19 17 15 23 23 N 1.30951 * 108.83268 * 359.56085 * 9 7 6 24 24 H 1.09000 * 109.46824 * 60.00153 * 1 2 3 25 25 H 1.08993 * 109.47004 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47101 * 300.01081 * 1 2 3 27 27 H 1.07997 * 126.53319 * 359.97096 * 6 5 3 28 28 H 1.08996 * 109.47290 * 180.02562 * 13 11 10 29 29 H 1.09003 * 109.47622 * 300.00106 * 13 11 10 30 30 H 1.08995 * 109.47070 * 59.99821 * 13 11 10 31 31 H 1.08996 * 109.46661 * 55.00618 * 14 11 10 32 32 H 1.08998 * 109.46715 * 175.00014 * 14 11 10 33 33 H 0.97008 * 119.99866 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4020 2.2208 -0.0005 5 6 3.5329 1.2782 0.0006 6 6 4.2780 2.4195 0.0001 7 7 5.5877 2.0390 0.0015 8 1 6.3562 2.6308 0.0013 9 6 5.6207 0.6753 -0.0032 10 16 7.0781 -0.3151 -0.0102 11 6 6.3363 -1.9660 -0.0131 12 1 5.6475 -2.0533 -0.8533 13 6 5.5748 -2.1853 1.2956 14 6 7.4378 -3.0198 -0.1451 15 6 8.1073 -2.8812 -1.4880 16 1 7.7802 -2.1176 -2.1782 17 6 9.1374 -3.7292 -1.8355 18 7 9.5360 -4.6586 -0.9948 19 14 9.9678 -3.5568 -3.4999 20 1 11.1114 -2.6161 -3.3876 21 1 10.4610 -4.8844 -3.9469 22 1 8.9914 -3.0331 -4.4885 23 7 4.3919 0.2227 0.0022 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 3.9028 3.4322 -0.0011 28 1 5.1285 -3.1797 1.2941 29 1 6.2637 -2.0980 2.1359 30 1 4.7902 -1.4346 1.3896 31 1 8.1747 -2.8758 0.6450 32 1 7.0011 -4.0146 -0.0577 33 1 10.2610 -5.2550 -1.2392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193546874.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:20 Heat of formation + Delta-G solvation = -59.455378 kcal Electronic energy + Delta-G solvation = -17922.466140 eV Core-core repulsion = 14881.533574 eV Total energy + Delta-G solvation = -3040.932566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.04643 -41.06161 -37.46428 -36.45180 -34.22211 -33.68162 -31.25811 -29.29682 -28.65486 -25.22772 -24.83840 -23.61167 -22.27956 -21.26869 -20.18895 -18.47618 -18.38616 -17.47152 -17.36836 -17.04777 -16.53180 -16.19630 -15.96754 -15.14616 -14.71934 -14.61949 -14.25087 -14.15664 -13.62398 -13.26935 -13.06137 -12.91661 -12.61238 -12.41302 -12.36550 -11.89487 -11.78424 -11.57842 -11.44506 -11.30772 -11.11220 -11.06541 -10.52228 -10.51793 -8.40741 -8.17205 -6.26122 0.24478 0.30804 0.98859 1.30812 1.43872 1.44376 1.55298 1.67043 2.16936 2.29606 2.44267 3.18151 3.47965 3.98075 4.15948 4.23277 4.29578 4.29731 4.35349 4.56258 4.61231 4.69548 4.97234 5.00174 5.10713 5.28383 5.36046 5.43879 5.54384 5.80629 5.99407 6.20425 6.44428 6.79767 6.86322 7.42258 8.94375 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026154 B = 0.004413 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.334596 B = 6343.761549 C = 6643.891625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.559 3.441 4 O -0.529 6.529 5 C -0.087 4.087 6 C 0.087 3.913 7 N -0.532 5.532 8 H 0.448 0.552 9 C 0.191 3.809 10 S -0.001 6.001 11 C -0.044 4.044 12 H 0.077 0.923 13 C -0.136 4.136 14 C 0.043 3.957 15 C -0.533 4.533 16 H 0.064 0.936 17 C 0.008 3.992 18 N -0.930 5.930 19 Si 0.957 3.043 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.266 1.266 23 N -0.470 5.470 24 H 0.067 0.933 25 H 0.126 0.874 26 H 0.069 0.931 27 H 0.238 0.762 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.007 0.993 32 H 0.016 0.984 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.764 14.471 3.046 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.405 3.595 4 O -0.420 6.420 5 C -0.215 4.215 6 C -0.057 4.057 7 N -0.139 5.139 8 H 0.292 0.708 9 C -0.183 4.183 10 S 0.230 5.770 11 C -0.174 4.174 12 H 0.095 0.905 13 C -0.195 4.195 14 C 0.005 3.995 15 C -0.571 4.571 16 H 0.083 0.917 17 C -0.190 4.190 18 N -0.570 5.570 19 Si 0.782 3.218 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.190 1.190 23 N -0.194 5.194 24 H 0.086 0.914 25 H 0.144 0.856 26 H 0.088 0.912 27 H 0.254 0.746 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.026 0.974 32 H 0.035 0.965 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.012 14.048 3.065 18.111 hybrid contribution -0.357 0.283 -0.764 0.889 sum -11.369 14.331 2.301 18.437 Atomic orbital electron populations 1.23597 0.74236 1.05650 1.02930 1.86697 1.25248 1.31924 1.83475 1.19677 0.86779 0.81492 0.71544 1.90823 1.66284 1.36238 1.48665 1.19726 0.91211 0.91302 1.19256 1.23338 0.81749 1.00822 0.99747 1.43251 1.09068 1.06232 1.55317 0.70845 1.25712 0.98973 0.85619 1.07971 1.85844 0.98679 1.00083 1.92435 1.23254 1.00076 0.92377 1.01659 0.90494 1.22020 1.00030 1.02588 0.94853 1.18894 0.91794 0.92292 0.96539 1.21586 1.17167 1.16398 1.01955 0.91745 1.25815 0.97675 0.94807 1.00734 1.70073 1.29140 1.20209 1.37591 0.85567 0.78908 0.77439 0.79920 1.19700 1.21008 1.19048 1.71243 0.98372 1.30338 1.19457 0.91434 0.85609 0.91243 0.74626 0.91903 0.92244 0.90977 0.97443 0.96544 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.57 113.37 1.20 1.74 16 2 O -0.36 -10.27 10.58 -57.29 -0.61 -10.87 16 3 C 0.56 16.42 7.95 70.14 0.56 16.98 16 4 O -0.53 -15.67 16.67 19.62 0.33 -15.34 16 5 C -0.09 -2.53 7.00 40.35 0.28 -2.25 16 6 C 0.09 1.78 11.76 83.53 0.98 2.76 16 7 N -0.53 -11.15 6.16 -193.62 -1.19 -12.34 16 8 H 0.45 5.91 8.96 -92.71 -0.83 5.08 16 9 C 0.19 5.91 7.95 179.69 1.43 7.34 16 10 S 0.00 -0.03 21.06 -56.49 -1.19 -1.22 16 11 C -0.04 -1.83 2.26 30.59 0.07 -1.76 16 12 H 0.08 3.39 8.14 -2.40 -0.02 3.37 16 13 C -0.14 -4.93 9.01 71.98 0.65 -4.28 16 14 C 0.04 2.20 4.44 29.85 0.13 2.33 16 15 C -0.53 -29.03 8.53 25.60 0.22 -28.81 16 16 H 0.06 3.43 7.60 -2.91 -0.02 3.41 16 17 C 0.01 0.44 5.46 84.65 0.46 0.91 16 18 N -0.93 -54.84 13.29 21.45 0.28 -54.56 16 19 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 N -0.47 -15.99 8.76 -185.42 -1.62 -17.62 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.24 2.70 8.06 -2.91 -0.02 2.68 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.07 2.56 5.87 -2.39 -0.01 2.55 16 31 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 Total: -1.00 -69.59 306.22 4.31 -65.29 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 0.30 Total: 6.25 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 5.98 Total: -5.05 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.53 Total: -84.51 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.28 Total: -26.21 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -1.19 Total: -1.22 kcal Total: -69.59 4.31 -65.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193546874.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.830 kcal (2) G-P(sol) polarization free energy of solvation -69.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds