Wall clock time and date at job start Mon Mar 30 2020 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99874 * 2 1 4 4 C 1.53002 * 109.47331 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46763 * 64.99944 * 4 3 2 6 6 C 1.46506 * 119.99882 * 262.48735 * 5 4 3 7 7 C 1.50695 * 109.47041 * 265.01398 * 6 5 4 8 8 H 1.07999 * 120.00401 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99494 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00481 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99771 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46755 * 60.00035 * 11 9 7 13 13 H 1.48499 * 109.47032 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47022 * 300.00314 * 11 9 7 15 15 C 1.34775 * 119.99942 * 82.49004 * 5 4 3 16 16 O 1.21687 * 119.99617 * 182.38860 * 15 5 4 17 17 C 1.46678 * 120.00211 * 2.39232 * 15 5 4 18 18 C 1.35662 * 126.12961 * 172.40452 * 17 15 5 19 19 N 1.30947 * 114.18661 * 180.02562 * 18 17 15 20 20 C 1.29429 * 117.36951 * 0.02562 * 19 18 17 21 21 S 1.70951 * 110.38822 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.46547 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47516 * 300.00015 * 1 2 3 24 24 H 1.08996 * 109.46940 * 60.00755 * 1 2 3 25 25 H 1.09000 * 109.47372 * 59.99617 * 3 2 1 26 26 H 1.08997 * 109.47190 * 299.99654 * 3 2 1 27 27 H 1.09002 * 109.47098 * 305.00136 * 4 3 2 28 28 H 1.08999 * 109.47462 * 184.99635 * 4 3 2 29 29 H 1.08997 * 109.46740 * 25.01396 * 6 5 4 30 30 H 1.08995 * 109.46634 * 145.00980 * 6 5 4 31 31 H 0.96992 * 120.00445 * 180.02562 * 10 9 7 32 32 H 1.07992 * 122.90632 * 0.02562 * 18 17 15 33 33 H 1.07991 * 124.80477 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2648 -0.8718 -1.2947 7 6 5.7401 -1.0947 -1.0833 8 1 6.3973 -0.2513 -0.9311 9 6 6.2507 -2.3755 -1.0832 10 7 5.4503 -3.4025 -1.2681 11 14 8.0796 -2.6518 -0.8218 12 1 8.4785 -2.1064 0.5005 13 1 8.3716 -4.1071 -0.8661 14 1 8.8425 -1.9615 -1.8926 15 6 4.1175 1.3138 -2.3620 16 8 4.4418 0.7909 -3.4118 17 6 3.8798 2.7601 -2.3057 18 6 4.1224 3.6499 -3.3006 19 7 3.8233 4.8882 -2.9977 20 6 3.3446 5.1128 -1.8163 21 16 3.2291 3.6536 -0.9332 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.6885 1.8464 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 3.8508 0.5686 0.8427 28 1 3.9784 2.1766 0.0901 29 1 3.7045 -1.3788 -0.5093 30 1 3.9723 -1.2715 -2.2657 31 1 5.8094 -4.3035 -1.2676 32 1 4.5271 3.3619 -4.2595 33 1 3.0580 6.0843 -1.4417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224930790.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:10 Heat of formation + Delta-G solvation = -18.893244 kcal Electronic energy + Delta-G solvation = -18852.222439 eV Core-core repulsion = 15813.048779 eV Total energy + Delta-G solvation = -3039.173660 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.82198 -38.87692 -37.53042 -35.01996 -32.80539 -30.61320 -29.72243 -27.36609 -26.20285 -25.54768 -23.22085 -22.90686 -20.61292 -19.38336 -17.96944 -16.67829 -16.51550 -16.41368 -15.55478 -15.45612 -15.02579 -14.74031 -14.34470 -13.98116 -13.85159 -13.61193 -13.24770 -12.37103 -12.27921 -12.02261 -11.87353 -11.42823 -11.32634 -11.03526 -10.90473 -10.52831 -10.16939 -9.73551 -9.69792 -9.47893 -9.25417 -9.16669 -8.89174 -8.40321 -7.77732 -6.01862 -4.06830 0.41029 1.29090 1.68610 2.70352 3.33643 3.38108 3.40821 3.65218 3.76105 3.89485 4.33269 4.46704 4.86710 5.12077 5.20679 5.28045 5.32254 5.33199 5.41473 5.44265 5.46289 5.52776 5.77522 6.01802 6.18702 7.04736 7.27599 7.42429 7.51496 7.67286 7.94017 8.21245 8.28117 8.79547 8.98963 9.57399 11.06182 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.006936 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.933203 B = 4036.015882 C = 5048.296244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.038 3.962 4 C 0.100 3.900 5 N -0.579 5.579 6 C 0.254 3.746 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.063 3.937 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.578 3.422 16 O -0.519 6.519 17 C -0.268 4.268 18 C 0.098 3.902 19 N -0.478 5.478 20 C -0.018 4.018 21 S 0.179 5.821 22 H 0.086 0.914 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.186 0.814 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 14.131 5.455 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.040 4.040 4 C -0.026 4.026 5 N -0.309 5.309 6 C 0.136 3.864 7 C -0.569 4.569 8 H 0.074 0.926 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.202 1.202 15 C 0.363 3.637 16 O -0.397 6.397 17 C -0.392 4.392 18 C -0.058 4.058 19 N -0.192 5.192 20 C -0.312 4.312 21 S 0.434 5.566 22 H 0.104 0.896 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.128 0.872 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.203 0.797 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -9.282 13.714 5.542 17.463 hybrid contribution 1.118 0.014 -0.559 1.250 sum -8.164 13.728 4.983 16.731 Atomic orbital electron populations 1.22724 0.81657 1.02782 0.99341 1.88075 1.19033 1.26593 1.95182 1.23309 0.94674 0.85703 1.00338 1.21865 0.91850 0.98400 0.90499 1.48103 1.63777 1.12012 1.07018 1.19367 0.95941 0.71841 0.99243 1.21409 0.93122 0.92471 1.49946 0.92555 1.24903 0.98086 0.95809 0.95088 1.69924 1.35022 0.98710 1.49446 0.86571 0.85229 0.77027 0.78670 1.20265 1.21145 1.20187 1.16755 0.78995 0.83059 0.84933 1.90825 1.47642 1.71916 1.29298 1.26313 1.13726 1.00674 0.98470 1.22196 0.97670 0.85578 1.00319 1.66333 1.13867 1.21525 1.17447 1.29155 1.01932 1.05912 0.94242 1.84468 1.57268 0.98435 1.16471 0.89582 0.94430 0.94460 0.92134 0.93097 0.87247 0.89987 0.93582 0.93955 0.92646 0.79689 0.78855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -6.05 10.60 -35.23 -0.37 -6.43 16 3 C 0.04 0.53 4.84 37.16 0.18 0.71 16 4 C 0.10 1.62 5.32 -4.04 -0.02 1.60 16 5 N -0.58 -12.43 2.44 -176.60 -0.43 -12.86 16 6 C 0.25 6.71 5.10 -5.19 -0.03 6.68 16 7 C -0.53 -15.12 9.35 -34.44 -0.32 -15.44 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 11 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.58 12.53 7.52 -12.85 -0.10 12.43 16 16 O -0.52 -13.38 16.52 5.20 0.09 -13.29 16 17 C -0.27 -4.51 6.08 -37.10 -0.23 -4.74 16 18 C 0.10 1.57 11.10 -18.85 -0.21 1.36 16 19 N -0.48 -6.89 10.51 -15.38 -0.16 -7.05 16 20 C -0.02 -0.20 12.22 51.75 0.63 0.43 16 21 S 0.18 2.07 15.77 -107.50 -1.69 0.38 16 22 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.69 6.30 -51.40 -0.32 0.37 16 27 H 0.11 1.80 8.01 -51.93 -0.42 1.38 16 28 H 0.08 1.14 4.45 -22.52 -0.10 1.04 16 29 H 0.05 1.24 7.98 -51.93 -0.41 0.83 16 30 H 0.04 1.26 7.54 -51.93 -0.39 0.87 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.19 2.89 8.06 -52.49 -0.42 2.46 16 33 H 0.19 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 297.07 15.07 4.48 4.48 Total: -1.00 -34.48 297.07 -5.18 -39.66 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -3.73 Total: -2.20 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 0.93 Total: 6.24 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.14 Total: -45.80 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.29 Total: -19.72 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.69 Total: 0.38 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.48 -5.18 -39.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224930790.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.771 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds