Wall clock time and date at job start Mon Mar 30 2020 02:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00127 * 2 1 4 4 C 1.40018 * 111.00063 * 123.95896 * 2 1 3 5 5 C 1.38666 * 120.09192 * 299.99761 * 4 2 1 6 6 C 1.38266 * 119.99390 * 179.69680 * 5 4 2 7 7 C 1.38254 * 120.19613 * 0.28277 * 6 5 4 8 8 C 1.38263 * 120.19088 * 0.02562 * 7 6 5 9 9 C 1.38660 * 120.00218 * 359.97438 * 8 7 6 10 10 N 1.40016 * 120.09584 * 179.97438 * 9 8 7 11 11 S 1.65594 * 120.00233 * 326.97182 * 10 9 8 12 12 O 1.42106 * 106.40454 * 181.21495 * 11 10 9 13 13 O 1.42105 * 106.40454 * 314.12949 * 11 10 9 14 14 C 1.76204 * 107.22044 * 67.67079 * 11 10 9 15 15 H 1.07995 * 119.99472 * 0.02562 * 14 11 10 16 16 C 1.37873 * 120.00139 * 180.02562 * 14 11 10 17 17 N 1.31521 * 120.00093 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00231 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.46590 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46910 * 119.99512 * 18 16 14 21 21 H 1.48492 * 109.47105 * 240.00104 * 18 16 14 22 22 H 1.08997 * 109.47174 * 296.04388 * 1 2 3 23 23 H 1.09000 * 109.47177 * 56.04492 * 1 2 3 24 24 H 1.09005 * 109.47465 * 176.04105 * 1 2 3 25 25 H 1.08993 * 109.47218 * 183.95287 * 3 2 1 26 26 H 1.08999 * 109.47044 * 303.96039 * 3 2 1 27 27 H 1.09004 * 109.46751 * 63.95024 * 3 2 1 28 28 H 1.07996 * 120.00043 * 359.97438 * 5 4 2 29 29 H 1.08006 * 119.90004 * 180.25131 * 6 5 4 30 30 H 1.08004 * 119.90206 * 179.97438 * 7 6 5 31 31 H 1.08005 * 119.99954 * 179.97438 * 8 7 6 32 32 H 0.97001 * 119.99685 * 146.97370 * 10 9 8 33 33 H 0.97001 * 120.00300 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9708 -0.7302 1.0842 5 6 1.6600 -0.3510 2.3813 6 6 2.1515 -1.0772 3.4503 7 6 2.9579 -2.1786 3.2308 8 6 3.2780 -2.5599 1.9409 9 6 2.7895 -1.8374 0.8629 10 7 3.1129 -2.2215 -0.4441 11 16 4.5867 -2.9045 -0.7658 12 8 4.6181 -3.1509 -2.1650 13 8 5.5534 -2.1075 -0.0953 14 6 4.6126 -4.4824 0.0180 15 1 3.7532 -4.8217 0.5770 16 6 5.7301 -5.2837 -0.0823 17 7 6.7765 -4.8707 -0.7635 18 14 5.7573 -6.9568 0.7481 19 1 4.4657 -7.1847 1.4446 20 1 5.9607 -8.0138 -0.2749 21 1 6.8667 -7.0020 1.7341 22 1 -0.3633 0.4512 0.9233 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0710 25 1 3.0827 1.3432 -0.0708 26 1 1.5897 1.9163 -0.8524 27 1 1.7043 1.8723 0.9233 28 1 1.0304 0.5088 2.5564 29 1 1.9051 -0.7829 4.4599 30 1 3.3395 -2.7422 4.0693 31 1 3.9085 -3.4205 1.7729 32 1 2.4736 -2.0874 -1.1612 33 1 7.5629 -5.4343 -0.8338 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234266970.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:52 Heat of formation + Delta-G solvation = -52.465627 kcal Electronic energy + Delta-G solvation = -19152.832096 eV Core-core repulsion = 16112.202628 eV Total energy + Delta-G solvation = -3040.629468 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.70199 -36.35811 -35.26734 -34.26015 -34.03073 -33.16164 -29.71825 -28.35476 -27.50272 -26.30020 -24.31263 -22.04936 -20.79715 -18.86830 -17.79320 -17.20314 -16.25384 -16.14838 -15.23652 -14.93202 -14.68898 -14.30839 -14.06654 -13.82880 -13.48511 -13.14543 -12.57007 -12.19708 -12.12475 -12.02882 -11.74788 -11.61364 -11.28292 -11.25380 -10.86780 -10.61957 -10.60665 -10.36571 -10.25318 -10.05438 -9.30176 -8.85085 -8.45494 -8.36622 -7.58536 -6.76598 -5.40013 1.64481 1.80928 2.20696 3.02880 3.11743 3.18607 3.99128 4.01219 4.12983 4.56646 4.63524 5.15014 5.23805 5.34900 5.38156 5.49714 5.54806 5.59262 5.72475 5.85739 5.91294 5.94184 5.99680 6.22195 6.41035 6.57480 6.66571 6.91099 6.95621 6.99498 7.17670 7.25708 7.61511 7.88014 7.95598 8.80749 10.17293 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025150 B = 0.007187 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.074988 B = 3895.101813 C = 4536.839420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.504 5.504 3 C 0.030 3.970 4 C 0.037 3.963 5 C -0.126 4.126 6 C -0.150 4.150 7 C -0.087 4.087 8 C -0.168 4.168 9 C 0.223 3.777 10 N -1.059 6.059 11 S 2.704 3.296 12 O -0.998 6.998 13 O -0.992 6.992 14 C -1.023 5.023 15 H 0.110 0.890 16 C 0.134 3.866 17 N -0.841 5.841 18 Si 0.921 3.079 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.270 1.270 22 H 0.027 0.973 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.028 0.972 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.164 0.836 32 H 0.417 0.583 33 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.732 6.520 6.144 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.225 5.225 3 C -0.117 4.117 4 C -0.061 4.061 5 C -0.147 4.147 6 C -0.170 4.170 7 C -0.106 4.106 8 C -0.189 4.189 9 C 0.123 3.877 10 N -0.800 5.800 11 S 2.804 3.196 12 O -0.989 6.989 13 O -0.982 6.982 14 C -1.156 5.156 15 H 0.128 0.872 16 C -0.085 4.085 17 N -0.470 5.470 18 Si 0.744 3.256 19 H -0.184 1.184 20 H -0.195 1.195 21 H -0.195 1.195 22 H 0.046 0.954 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.046 0.954 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.143 0.857 31 H 0.181 0.819 32 H 0.251 0.749 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.562 6.673 5.107 12.730 hybrid contribution -0.784 -0.779 1.104 1.562 sum -10.345 5.894 6.211 13.429 Atomic orbital electron populations 1.22454 0.86604 1.02507 1.00339 1.59445 1.07773 1.13964 1.41339 1.22437 1.01539 0.87514 1.00225 1.18527 1.02939 0.95660 0.88988 1.21256 1.00909 0.99910 0.92631 1.20846 1.00783 0.97252 0.98121 1.20964 0.96887 0.96403 0.96327 1.21940 1.03371 1.01858 0.91772 1.17296 0.94566 0.91198 0.84644 1.54125 1.37798 1.75761 1.12292 1.00969 0.69642 0.75502 0.73489 1.93391 1.84707 1.87007 1.33779 1.93401 1.56826 1.71649 1.76316 1.30626 1.09397 1.25535 1.50006 0.87173 1.24754 0.92820 0.99580 0.91307 1.69901 1.04687 1.38566 1.33846 0.86118 0.79367 0.80607 0.79485 1.18386 1.19549 1.19489 0.95402 0.91257 0.91223 0.90878 0.91235 0.95353 0.86772 0.86559 0.85731 0.81914 0.74882 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.35 60.06 0.56 0.89 16 2 N -0.50 -7.52 4.44 -186.64 -0.83 -8.35 16 3 C 0.03 0.39 9.39 60.06 0.56 0.95 16 4 C 0.04 0.62 4.76 -83.50 -0.40 0.22 16 5 C -0.13 -1.84 8.58 -39.41 -0.34 -2.18 16 6 C -0.15 -2.12 10.04 -39.57 -0.40 -2.52 16 7 C -0.09 -1.40 10.04 -39.57 -0.40 -1.79 16 8 C -0.17 -3.30 8.94 -39.42 -0.35 -3.65 16 9 C 0.22 4.44 6.21 -83.50 -0.52 3.92 16 10 N -1.06 -22.59 5.66 32.54 0.18 -22.40 16 11 S 2.70 72.10 4.63 -107.50 -0.50 71.60 16 12 O -1.00 -29.34 18.02 -57.17 -1.03 -30.37 16 13 O -0.99 -29.08 17.45 -57.17 -1.00 -30.08 16 14 C -1.02 -27.23 7.59 30.60 0.23 -27.00 16 15 H 0.11 2.66 6.89 -52.49 -0.36 2.30 16 16 C 0.13 3.63 5.46 -17.82 -0.10 3.54 16 17 N -0.84 -24.22 13.19 55.43 0.73 -23.49 16 18 Si 0.92 19.94 29.54 -169.99 -5.02 14.92 16 19 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H 0.03 0.29 7.13 -51.93 -0.37 -0.08 16 23 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 27 H 0.03 0.33 7.35 -51.93 -0.38 -0.06 16 28 H 0.11 1.38 7.02 -52.49 -0.37 1.01 16 29 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 31 H 0.16 3.49 4.48 -52.48 -0.23 3.25 16 32 H 0.42 7.97 8.59 -34.47 -0.30 7.68 16 33 H 0.29 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 293.00 15.07 4.42 4.42 Total: -1.00 -33.99 293.00 -7.87 -41.86 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -3.68 Total: 9.51 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: -1.14 Total: -27.63 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.09 Total: -54.24 kcal Atomic # 8 Polarization: -58.41 SS G_CDS: -2.03 Total: -60.44 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 72.10 SS G_CDS: -0.50 Total: 71.60 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.99 -7.87 -41.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234266970.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.610 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds