Wall clock time and date at job start Mon Mar 30 2020 02:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00127 * 2 1 4 4 C 1.40018 * 111.00063 * 123.95896 * 2 1 3 5 5 C 1.38666 * 120.09192 * 299.99761 * 4 2 1 6 6 C 1.38266 * 119.99390 * 179.69680 * 5 4 2 7 7 C 1.38254 * 120.19613 * 0.28277 * 6 5 4 8 8 C 1.38263 * 120.19088 * 0.02562 * 7 6 5 9 9 C 1.38660 * 120.00218 * 359.97438 * 8 7 6 10 10 N 1.40016 * 120.09584 * 179.97438 * 9 8 7 11 11 S 1.65594 * 120.00233 * 326.97182 * 10 9 8 12 12 O 1.42106 * 106.40454 * 181.21495 * 11 10 9 13 13 O 1.42105 * 106.40454 * 314.12949 * 11 10 9 14 14 C 1.76204 * 107.22044 * 67.67079 * 11 10 9 15 15 H 1.07995 * 119.99472 * 0.02562 * 14 11 10 16 16 C 1.37873 * 120.00139 * 180.02562 * 14 11 10 17 17 N 1.31521 * 120.00093 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00231 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.46590 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46910 * 119.99512 * 18 16 14 21 21 H 1.48492 * 109.47105 * 240.00104 * 18 16 14 22 22 H 1.08997 * 109.47174 * 296.04388 * 1 2 3 23 23 H 1.09000 * 109.47177 * 56.04492 * 1 2 3 24 24 H 1.09005 * 109.47465 * 176.04105 * 1 2 3 25 25 H 1.08993 * 109.47218 * 183.95287 * 3 2 1 26 26 H 1.08999 * 109.47044 * 303.96039 * 3 2 1 27 27 H 1.09004 * 109.46751 * 63.95024 * 3 2 1 28 28 H 1.07996 * 120.00043 * 359.97438 * 5 4 2 29 29 H 1.08006 * 119.90004 * 180.25131 * 6 5 4 30 30 H 1.08004 * 119.90206 * 179.97438 * 7 6 5 31 31 H 1.08005 * 119.99954 * 179.97438 * 8 7 6 32 32 H 0.97001 * 119.99685 * 146.97370 * 10 9 8 33 33 H 0.97001 * 120.00300 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9708 -0.7302 1.0842 5 6 1.6600 -0.3510 2.3813 6 6 2.1515 -1.0772 3.4503 7 6 2.9579 -2.1786 3.2308 8 6 3.2780 -2.5599 1.9409 9 6 2.7895 -1.8374 0.8629 10 7 3.1129 -2.2215 -0.4441 11 16 4.5867 -2.9045 -0.7658 12 8 4.6181 -3.1509 -2.1650 13 8 5.5534 -2.1075 -0.0953 14 6 4.6126 -4.4824 0.0180 15 1 3.7532 -4.8217 0.5770 16 6 5.7301 -5.2837 -0.0823 17 7 6.7765 -4.8707 -0.7635 18 14 5.7573 -6.9568 0.7481 19 1 4.4657 -7.1847 1.4446 20 1 5.9607 -8.0138 -0.2749 21 1 6.8667 -7.0020 1.7341 22 1 -0.3633 0.4512 0.9233 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0710 25 1 3.0827 1.3432 -0.0708 26 1 1.5897 1.9163 -0.8524 27 1 1.7043 1.8723 0.9233 28 1 1.0304 0.5088 2.5564 29 1 1.9051 -0.7829 4.4599 30 1 3.3395 -2.7422 4.0693 31 1 3.9085 -3.4205 1.7729 32 1 2.4736 -2.0874 -1.1612 33 1 7.5629 -5.4343 -0.8338 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234266970.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:51 Heat of formation + Delta-G solvation = -79.458297 kcal Electronic energy + Delta-G solvation = -19154.002586 eV Core-core repulsion = 16112.202628 eV Total energy + Delta-G solvation = -3041.799958 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95050 -37.69198 -37.29737 -36.25265 -35.78559 -35.20028 -30.96867 -29.72354 -28.45494 -28.36680 -25.43530 -23.43515 -22.06265 -20.80945 -19.61573 -18.72292 -18.22337 -17.45308 -16.99641 -16.30440 -15.90834 -15.89710 -15.79081 -15.40784 -14.81674 -14.51654 -14.05667 -13.83067 -13.42714 -13.16128 -13.09341 -13.05197 -12.85526 -12.61927 -12.60365 -12.53866 -12.44408 -12.28169 -12.12999 -11.57850 -11.25905 -10.89360 -9.70079 -9.42676 -9.02934 -8.76650 -7.52139 0.14792 0.39450 0.56025 1.34092 1.35285 1.53591 2.19598 2.54890 2.78442 2.84033 2.98101 3.63643 4.02662 4.16597 4.21487 4.30652 4.41936 4.43746 4.47280 4.64942 4.69195 4.75620 4.91283 4.98415 5.01464 5.17515 5.28805 5.39338 5.55901 5.65676 5.85204 5.91265 6.02119 6.26337 6.53781 6.73226 8.18518 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025150 B = 0.007187 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.074988 B = 3895.101813 C = 4536.839420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.529 5.529 3 C 0.030 3.970 4 C 0.040 3.960 5 C -0.122 4.122 6 C -0.133 4.133 7 C -0.093 4.093 8 C -0.199 4.199 9 C 0.179 3.821 10 N -1.049 6.049 11 S 2.710 3.290 12 O -1.039 7.039 13 O -1.030 7.030 14 C -1.031 5.031 15 H 0.128 0.872 16 C 0.073 3.927 17 N -0.892 5.892 18 Si 0.993 3.007 19 H -0.244 1.244 20 H -0.260 1.260 21 H -0.257 1.257 22 H 0.046 0.954 23 H 0.087 0.913 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.149 0.851 29 H 0.159 0.841 30 H 0.149 0.851 31 H 0.136 0.864 32 H 0.424 0.576 33 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.901 6.871 8.580 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.250 5.250 3 C -0.117 4.117 4 C -0.058 4.058 5 C -0.142 4.142 6 C -0.152 4.152 7 C -0.111 4.111 8 C -0.220 4.220 9 C 0.080 3.920 10 N -0.795 5.795 11 S 2.812 3.188 12 O -1.029 7.029 13 O -1.020 7.020 14 C -1.165 5.165 15 H 0.146 0.854 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.810 3.190 19 H -0.167 1.167 20 H -0.185 1.185 21 H -0.181 1.181 22 H 0.064 0.936 23 H 0.106 0.894 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.166 0.834 29 H 0.177 0.823 30 H 0.167 0.833 31 H 0.154 0.846 32 H 0.260 0.740 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.751 7.061 7.539 15.646 hybrid contribution -0.217 -0.747 0.404 0.877 sum -11.969 6.314 7.944 15.691 Atomic orbital electron populations 1.22513 0.84405 1.02689 1.02123 1.59392 1.09770 1.14778 1.41105 1.22464 0.99979 0.86969 1.02277 1.18703 1.01783 0.94603 0.90740 1.21653 1.00504 1.00574 0.91493 1.21334 0.98379 0.95432 1.00087 1.21291 0.97042 0.97387 0.95397 1.21921 1.04418 1.02024 0.93670 1.17660 0.97335 0.93532 0.83447 1.53366 1.36221 1.76099 1.13769 1.00390 0.70210 0.75701 0.72490 1.93322 1.85943 1.87581 1.36038 1.93334 1.59396 1.72618 1.76662 1.30849 1.10301 1.25330 1.49980 0.85445 1.26038 0.92084 1.04272 0.91684 1.69996 1.05849 1.40729 1.35727 0.85066 0.80453 0.74726 0.78749 1.16676 1.18484 1.18078 0.93589 0.89392 0.91939 0.93576 0.89062 0.93355 0.83355 0.82333 0.83319 0.84598 0.74037 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.35 127.69 1.19 1.79 16 2 N -0.53 -14.91 4.44 -744.41 -3.31 -18.21 16 3 C 0.03 0.71 9.39 127.69 1.20 1.91 16 4 C 0.04 1.28 4.76 38.23 0.18 1.46 16 5 C -0.12 -3.10 8.58 22.38 0.19 -2.91 16 6 C -0.13 -3.23 10.04 22.28 0.22 -3.00 16 7 C -0.09 -2.79 10.04 22.28 0.22 -2.57 16 8 C -0.20 -7.88 8.94 22.38 0.20 -7.68 16 9 C 0.18 7.19 6.21 38.23 0.24 7.43 16 10 N -1.05 -46.53 5.66 -50.97 -0.29 -46.82 16 11 S 2.71 151.61 4.63 -56.49 -0.26 151.35 16 12 O -1.04 -64.21 18.02 -128.00 -2.31 -66.52 16 13 O -1.03 -63.66 17.45 -128.00 -2.23 -65.89 16 14 C -1.03 -56.48 7.59 67.73 0.51 -55.97 16 15 H 0.13 6.30 6.89 -2.91 -0.02 6.28 16 16 C 0.07 4.00 5.46 84.65 0.46 4.46 16 17 N -0.89 -53.06 13.19 21.45 0.28 -52.78 16 18 Si 0.99 40.61 29.54 68.60 2.03 42.63 16 19 H -0.24 -9.23 7.11 99.48 0.71 -8.52 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 H 0.05 0.77 7.13 -2.39 -0.02 0.76 16 23 H 0.09 1.46 8.12 -2.39 -0.02 1.44 16 24 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.76 8.12 -2.39 -0.02 1.74 16 27 H 0.05 0.95 7.35 -2.38 -0.02 0.94 16 28 H 0.15 2.77 7.02 -2.91 -0.02 2.75 16 29 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 30 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 31 H 0.14 6.04 4.48 -2.91 -0.01 6.03 16 32 H 0.42 16.94 8.59 -96.75 -0.83 16.11 16 33 H 0.30 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -77.30 293.00 -1.15 -78.45 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.31 Total: 32.86 kcal Atomic # 6 Polarization: -59.70 SS G_CDS: 4.63 Total: -55.07 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -3.31 Total: -117.81 kcal Atomic # 8 Polarization: -127.87 SS G_CDS: -4.54 Total: -132.41 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 16 Polarization: 151.61 SS G_CDS: -0.26 Total: 151.35 kcal Total: -77.30 -1.15 -78.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234266970.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.004 kcal (2) G-P(sol) polarization free energy of solvation -77.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds