Wall clock time and date at job start Mon Mar 30 2020 00:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86797 * 119.99758 * 2 1 4 4 H 1.48502 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47453 * 300.00123 * 3 2 1 6 6 H 1.48505 * 109.47341 * 60.00275 * 3 2 1 7 7 C 1.38793 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00383 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99737 * 179.97438 * 9 7 2 11 11 C 1.50710 * 109.46798 * 180.02562 * 10 9 7 12 12 N 1.31124 * 126.54996 * 90.00120 * 11 10 9 13 13 C 1.34500 * 105.61052 * 180.02562 * 12 11 10 14 14 C 1.50700 * 126.28616 * 179.97438 * 13 12 11 15 15 H 1.09005 * 109.52258 * 359.88077 * 14 13 12 16 16 C 1.53311 * 109.56376 * 239.74955 * 14 13 12 17 17 C 1.53177 * 108.96735 * 183.11099 * 16 14 13 18 18 C 1.53098 * 109.21356 * 56.95427 * 17 16 14 19 19 O 1.42899 * 109.41440 * 302.35638 * 18 17 16 20 20 C 1.42904 * 114.09711 * 61.16120 * 19 18 17 21 21 N 1.29945 * 107.42494 * 0.24302 * 13 12 11 22 22 O 1.21295 * 110.25372 * 359.57798 * 21 13 12 23 23 H 0.96997 * 119.99960 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47248 * 60.00509 * 10 9 7 25 25 H 1.09000 * 109.47373 * 299.99665 * 10 9 7 26 26 H 1.09001 * 109.62384 * 63.23686 * 16 14 13 27 27 H 1.09002 * 109.52711 * 302.93031 * 16 14 13 28 28 H 1.09002 * 109.52487 * 297.01638 * 17 16 14 29 29 H 1.09004 * 109.52023 * 176.89257 * 17 16 14 30 30 H 1.08999 * 109.47859 * 62.34349 * 18 17 16 31 31 H 1.09000 * 109.47836 * 182.37389 * 18 17 16 32 32 H 1.09002 * 109.48461 * 58.81736 * 20 19 18 33 33 H 1.09002 * 109.48312 * 178.85406 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8916 2.3965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9874 -5.3027 -0.0001 12 7 1.7138 -6.0337 -1.0538 13 6 1.2726 -7.2100 -0.5736 14 6 0.8278 -8.3961 -1.3900 15 1 0.9137 -8.1610 -2.4509 16 6 -0.6306 -8.7310 -1.0563 17 6 -1.0442 -9.9840 -1.8343 18 6 -0.0902 -11.1301 -1.4877 19 8 1.2504 -10.7411 -1.7936 20 6 1.7095 -9.6035 -1.0606 21 7 1.2949 -7.1339 0.7234 22 8 1.7074 -6.0482 1.0732 23 1 -0.4850 0.8400 0.0004 24 1 3.1245 -3.7313 0.8906 25 1 3.1245 -3.7313 -0.8895 26 1 -1.2721 -7.8969 -1.3408 27 1 -0.7260 -8.9178 0.0133 28 1 -0.9962 -9.7810 -2.9042 29 1 -2.0623 -10.2624 -1.5618 30 1 -0.1687 -11.3595 -0.4250 31 1 -0.3547 -12.0122 -2.0707 32 1 1.6546 -9.8130 0.0077 33 1 2.7415 -9.3859 -1.3359 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236219985.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:16 Heat of formation + Delta-G solvation = 5.612377 kcal Electronic energy + Delta-G solvation = -17860.187586 eV Core-core repulsion = 14822.076570 eV Total energy + Delta-G solvation = -3038.111016 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.30042 -39.61501 -35.93343 -34.25520 -32.91140 -32.58002 -31.09282 -28.46569 -25.65859 -25.38314 -24.88910 -23.17122 -21.75390 -20.00482 -18.01595 -17.85728 -17.13816 -16.46759 -16.19147 -15.14871 -14.93602 -14.84994 -14.56944 -14.33088 -13.97553 -13.37464 -13.04141 -12.89993 -12.69202 -12.15600 -11.86773 -11.47102 -11.39436 -11.20720 -11.15541 -11.09836 -10.96260 -10.77050 -10.60154 -10.24304 -9.78387 -9.39922 -9.21523 -8.57133 -6.76514 -6.38243 -4.12982 1.32776 2.33758 3.02428 3.14931 3.19520 3.24472 3.37388 3.45320 3.84977 4.04738 4.16913 4.57071 4.61311 4.65897 4.69907 4.94703 4.99539 5.11831 5.13454 5.28967 5.38818 5.45000 5.51008 5.59241 5.68609 5.76176 5.85881 5.90020 6.04092 6.10672 6.26345 6.87502 7.46653 8.20920 8.41900 9.07985 10.69835 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.051228 B = 0.003456 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.440685 B = 8098.901691 C = 8315.794325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.925 3.075 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.525 4.525 8 H 0.081 0.919 9 S -0.083 6.083 10 C -0.043 4.043 11 C 0.229 3.771 12 N -0.479 5.479 13 C 0.171 3.829 14 C -0.027 4.027 15 H 0.109 0.891 16 C -0.116 4.116 17 C -0.153 4.153 18 C 0.056 3.944 19 O -0.377 6.377 20 C 0.073 3.927 21 N -0.389 5.389 22 O 0.077 5.923 23 H 0.270 0.730 24 H 0.103 0.897 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.097 -17.256 -1.625 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.751 3.249 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.673 4.673 8 H 0.099 0.901 9 S 0.143 5.857 10 C -0.192 4.192 11 C 0.008 3.992 12 N -0.214 5.214 13 C -0.102 4.102 14 C -0.047 4.047 15 H 0.128 0.872 16 C -0.154 4.154 17 C -0.191 4.191 18 C -0.020 4.020 19 O -0.295 6.295 20 C -0.005 4.005 21 N -0.099 5.099 22 O 0.020 5.980 23 H 0.080 0.920 24 H 0.121 0.879 25 H 0.129 0.871 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.337 -18.187 -1.668 18.266 hybrid contribution 1.567 1.745 0.245 2.358 sum 1.230 -16.442 -1.423 16.550 Atomic orbital electron populations 1.70011 1.06036 1.27749 1.46418 1.25035 0.95135 0.99275 0.94120 0.86007 0.79620 0.81267 0.78000 1.19363 1.20448 1.20441 1.22750 0.94910 0.89991 1.59697 0.90074 1.85206 1.05211 0.98315 1.96962 1.21993 1.04418 0.85799 1.06999 1.28232 0.93927 0.96828 0.80177 1.71949 1.18671 1.02151 1.28611 1.25438 1.00626 0.95734 0.88440 1.20174 0.96303 0.88781 0.99491 0.87239 1.21682 0.94094 0.98544 1.01129 1.22195 1.00005 0.95361 1.01545 1.22655 0.81996 0.96955 1.00442 1.87964 1.29341 1.46479 1.65697 1.22560 0.97690 0.84004 0.96264 1.74514 1.18744 1.01144 1.15489 1.85294 1.58895 1.18064 1.35778 0.91996 0.87862 0.87057 0.90592 0.90926 0.90552 0.90271 0.92954 0.88588 0.92255 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.82 13.22 55.49 0.73 -24.09 16 2 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 3 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.53 -14.02 9.50 30.94 0.29 -13.72 16 8 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.08 -2.05 21.42 -107.50 -2.30 -4.36 16 10 C -0.04 -0.83 6.30 36.01 0.23 -0.60 16 11 C 0.23 4.23 7.77 -13.06 -0.10 4.13 16 12 N -0.48 -8.84 11.55 -9.87 -0.11 -8.96 16 13 C 0.17 2.78 6.74 -156.37 -1.05 1.73 16 14 C -0.03 -0.35 2.86 -91.56 -0.26 -0.61 16 15 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 16 C -0.12 -1.30 5.31 -26.48 -0.14 -1.45 16 17 C -0.15 -1.32 6.13 -26.59 -0.16 -1.48 16 18 C 0.06 0.48 6.84 37.21 0.25 0.74 16 19 O -0.38 -4.24 10.77 -35.23 -0.38 -4.62 16 20 C 0.07 0.83 6.11 37.21 0.23 1.06 16 21 N -0.39 -6.66 12.16 30.90 0.38 -6.28 16 22 O 0.08 1.39 11.31 18.09 0.20 1.60 16 23 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 25 H 0.11 2.02 8.14 -51.92 -0.42 1.59 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 300.03 15.07 4.52 4.52 Total: -1.00 -30.03 300.03 -6.99 -37.02 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -4.19 Total: -1.96 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -0.81 Total: -8.30 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 1.00 Total: -39.33 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: -0.17 Total: -3.02 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -2.30 Total: -4.36 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.03 -6.99 -37.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236219985.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.635 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds