Wall clock time and date at job start Mon Mar 30 2020 00:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00010 * 2 1 4 4 H 1.48500 * 109.47431 * 269.99626 * 3 2 1 5 5 H 1.48498 * 109.47309 * 30.00011 * 3 2 1 6 6 H 1.48503 * 109.47069 * 149.99737 * 3 2 1 7 7 C 1.38798 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00130 * 180.02562 * 7 2 1 9 9 S 1.76206 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99976 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47121 * 180.02562 * 10 9 7 12 12 N 1.31129 * 126.55415 * 90.29971 * 11 10 9 13 13 C 1.34500 * 105.61310 * 180.12355 * 12 11 10 14 14 C 1.50698 * 126.28891 * 179.90579 * 13 12 11 15 15 H 1.09004 * 109.57143 * 359.86416 * 14 13 12 16 16 C 1.53177 * 109.53626 * 120.01776 * 14 13 12 17 17 C 1.53173 * 109.04588 * 176.87704 * 16 14 13 18 18 C 1.53095 * 109.16329 * 303.02563 * 17 16 14 19 19 O 1.42901 * 109.41489 * 57.60980 * 18 17 16 20 20 C 1.42905 * 114.09770 * 298.84274 * 19 18 17 21 21 N 1.29950 * 107.42353 * 359.63940 * 13 12 11 22 22 O 1.21295 * 110.25084 * 0.22775 * 21 13 12 23 23 H 0.97003 * 119.99751 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47233 * 60.00060 * 10 9 7 25 25 H 1.09008 * 109.46894 * 300.00438 * 10 9 7 26 26 H 1.08995 * 109.53065 * 57.00471 * 16 14 13 27 27 H 1.09003 * 109.53968 * 296.75073 * 16 14 13 28 28 H 1.09001 * 109.52011 * 183.12252 * 17 16 14 29 29 H 1.09000 * 109.57458 * 62.96312 * 17 16 14 30 30 H 1.09002 * 109.47669 * 297.62672 * 18 17 16 31 31 H 1.08998 * 109.47829 * 177.59734 * 18 17 16 32 32 H 1.09002 * 109.48053 * 181.14179 * 20 19 18 33 33 H 1.08999 * 109.48097 * 301.16746 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9872 -5.3027 0.0017 12 7 1.7196 -6.0362 -1.0518 13 6 1.2736 -7.2106 -0.5715 14 6 0.8312 -8.3978 -1.3875 15 1 0.9228 -8.1660 -2.4487 16 6 1.7089 -9.6070 -1.0503 17 6 1.2006 -10.8256 -1.8267 18 6 -0.2721 -11.0626 -1.4822 19 8 -1.0270 -9.8894 -1.7917 20 6 -0.6273 -8.7285 -1.0603 21 7 1.2997 -7.1357 0.7256 22 8 1.7066 -6.0478 1.0751 23 1 -0.4850 0.8401 -0.0004 24 1 3.1236 -3.7311 0.8925 25 1 3.1251 -3.7317 -0.8875 26 1 1.6563 -9.8083 0.0196 27 1 2.7407 -9.3987 -1.3332 28 1 1.7851 -11.7032 -1.5503 29 1 1.2997 -10.6441 -2.8969 30 1 -0.3655 -11.2850 -0.4192 31 1 -0.6509 -11.9027 -2.0642 32 1 -1.2622 -7.8872 -1.3384 33 1 -0.7255 -8.9204 0.0082 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236220079.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:19 Heat of formation + Delta-G solvation = 5.807736 kcal Electronic energy + Delta-G solvation = -17861.133665 eV Core-core repulsion = 14823.031120 eV Total energy + Delta-G solvation = -3038.102545 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.30152 -39.60971 -35.93278 -34.26257 -32.92173 -32.57555 -31.08611 -28.46582 -25.65148 -25.39076 -24.87696 -23.17312 -21.76487 -20.01030 -18.01303 -17.85674 -17.13702 -16.46135 -16.16356 -15.13457 -14.93004 -14.86650 -14.61546 -14.23808 -14.04629 -13.37632 -13.03788 -12.90617 -12.68596 -12.16663 -11.84322 -11.48714 -11.42305 -11.19806 -11.17489 -11.12763 -10.93745 -10.75431 -10.59808 -10.24502 -9.78270 -9.39829 -9.20066 -8.57103 -6.75967 -6.37473 -4.12363 1.32762 2.33645 3.02013 3.16264 3.19761 3.24090 3.38403 3.45914 3.86488 4.05365 4.16757 4.54072 4.59288 4.64008 4.70057 4.95288 5.00139 5.12497 5.13536 5.29614 5.38814 5.46668 5.50077 5.58854 5.65072 5.75069 5.82227 5.89526 6.01372 6.10447 6.26157 6.90943 7.46834 8.21182 8.41759 9.08520 10.70527 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.050594 B = 0.003467 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.297013 B = 8074.388311 C = 8298.892022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.925 3.075 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.080 0.920 9 S -0.081 6.081 10 C -0.044 4.044 11 C 0.229 3.771 12 N -0.480 5.480 13 C 0.171 3.829 14 C -0.027 4.027 15 H 0.110 0.890 16 C -0.114 4.114 17 C -0.153 4.153 18 C 0.056 3.944 19 O -0.375 6.375 20 C 0.071 3.929 21 N -0.389 5.389 22 O 0.077 5.923 23 H 0.271 0.729 24 H 0.103 0.897 25 H 0.111 0.889 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.009 -17.951 -1.615 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.751 3.249 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.675 4.675 8 H 0.099 0.901 9 S 0.144 5.856 10 C -0.192 4.192 11 C 0.009 3.991 12 N -0.214 5.214 13 C -0.102 4.102 14 C -0.047 4.047 15 H 0.128 0.872 16 C -0.153 4.153 17 C -0.191 4.191 18 C -0.021 4.021 19 O -0.293 6.293 20 C -0.007 4.007 21 N -0.099 5.099 22 O 0.020 5.980 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.129 0.871 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.316 -18.785 -1.653 18.903 hybrid contribution 2.143 1.530 0.239 2.643 sum 3.458 -17.255 -1.414 17.655 Atomic orbital electron populations 1.69998 1.06034 1.27866 1.46280 1.25030 0.95128 0.99250 0.94111 0.86063 0.79388 0.80970 0.78517 1.20096 1.20666 1.19458 1.22707 0.94871 0.90024 1.59866 0.90142 1.85207 1.05135 0.98259 1.96966 1.21991 1.04442 0.85830 1.06970 1.28226 0.93904 0.96833 0.80173 1.71950 1.18667 1.02169 1.28613 1.25433 1.00722 0.95636 0.88438 1.20147 0.96567 0.88520 0.99509 0.87223 1.21646 0.99314 0.93219 1.01109 1.22193 0.97053 0.98335 1.01516 1.22647 0.90905 0.88139 1.00427 1.87982 1.58030 1.17705 1.65621 1.22590 0.93046 0.88705 0.96343 1.74518 1.18881 1.01010 1.15487 1.85293 1.59088 1.17869 1.35779 0.91927 0.87886 0.87078 0.90956 0.90945 0.90372 0.90570 0.92969 0.88605 0.88056 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.85 13.22 55.49 0.73 -24.11 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 20.45 29.55 -169.99 -5.02 15.43 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.53 -14.06 9.50 30.94 0.29 -13.76 16 8 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.08 -2.02 21.42 -107.50 -2.30 -4.32 16 10 C -0.04 -0.83 6.30 36.00 0.23 -0.60 16 11 C 0.23 4.23 7.77 -13.06 -0.10 4.13 16 12 N -0.48 -8.84 11.55 -9.87 -0.11 -8.96 16 13 C 0.17 2.78 6.73 -156.37 -1.05 1.73 16 14 C -0.03 -0.35 2.86 -91.63 -0.26 -0.61 16 15 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 16 C -0.11 -1.19 5.29 -26.55 -0.14 -1.33 16 17 C -0.15 -1.24 6.14 -26.59 -0.16 -1.40 16 18 C 0.06 0.48 6.84 37.21 0.25 0.73 16 19 O -0.38 -4.43 10.77 -35.23 -0.38 -4.81 16 20 C 0.07 0.87 6.11 37.20 0.23 1.10 16 21 N -0.39 -6.65 12.16 30.90 0.38 -6.28 16 22 O 0.08 1.39 11.31 18.10 0.20 1.60 16 23 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 25 H 0.11 2.01 8.14 -51.91 -0.42 1.59 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 300.01 15.07 4.52 4.52 Total: -1.00 -30.02 300.01 -6.99 -37.01 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -4.19 Total: -1.99 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -0.81 Total: -8.09 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 1.00 Total: -39.35 kcal Atomic # 8 Polarization: -3.04 SS G_CDS: -0.17 Total: -3.21 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: -2.02 SS G_CDS: -2.30 Total: -4.32 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.02 -6.99 -37.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236220079.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.822 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds