Wall clock time and date at job start Mon Mar 30 2020 02:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30584 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48498 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47104 * 300.00245 * 3 2 1 6 6 H 1.48502 * 109.46807 * 59.99966 * 3 2 1 7 7 C 1.40223 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99892 * 180.02562 * 7 2 1 9 9 C 1.41310 * 120.00352 * 359.97438 * 7 2 1 10 10 O 1.21853 * 119.99432 * 0.02562 * 9 7 2 11 11 N 1.34776 * 120.00447 * 179.97438 * 9 7 2 12 12 N 1.40095 * 120.00318 * 179.97438 * 11 9 7 13 13 C 1.30338 * 119.99890 * 180.02562 * 12 11 9 14 14 C 1.47052 * 119.99447 * 180.02562 * 13 12 11 15 15 C 1.41147 * 119.81853 * 359.97438 * 14 13 12 16 16 N 1.31046 * 120.52381 * 180.02562 * 15 14 13 17 17 C 1.33975 * 119.90856 * 0.02562 * 16 15 14 18 18 C 1.40417 * 120.91184 * 179.97438 * 17 16 15 19 19 C 1.36187 * 119.77698 * 180.02562 * 18 17 16 20 20 C 1.39405 * 120.99232 * 359.97021 * 19 18 17 21 21 C 1.36058 * 120.94303 * 0.02562 * 20 19 18 22 22 C 1.40770 * 119.70710 * 0.02562 * 21 20 19 23 23 N 1.32602 * 119.80609 * 180.02562 * 14 13 12 24 24 H 0.97009 * 120.00354 * 0.02562 * 1 2 3 25 25 H 0.97003 * 119.99680 * 0.02562 * 11 9 7 26 26 H 1.07993 * 120.00232 * 359.97438 * 13 12 11 27 27 H 1.08006 * 119.73789 * 0.04374 * 15 14 13 28 28 H 1.08002 * 120.11365 * 359.97438 * 18 17 16 29 29 H 1.07999 * 119.50440 * 179.97438 * 19 18 17 30 30 H 1.08007 * 119.52865 * 179.74426 * 20 19 18 31 31 H 1.08003 * 120.14382 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 3.6998 1.3464 -0.0006 5 1 1.8810 2.3965 -1.2125 6 1 1.8810 2.3964 1.2125 7 6 2.0069 -1.2144 -0.0005 8 1 3.0870 -1.2144 -0.0001 9 6 1.3004 -2.4382 -0.0005 10 8 0.0819 -2.4381 -0.0005 11 7 1.9743 -3.6054 -0.0016 12 7 1.2739 -4.8187 -0.0010 13 6 1.9256 -5.9474 -0.0015 14 6 1.1903 -7.2209 -0.0015 15 6 -0.2212 -7.2163 -0.0005 16 7 -0.8904 -8.3430 0.0001 17 6 -0.2331 -9.5104 0.0001 18 6 -0.9289 -10.7301 0.0012 19 6 -0.2373 -11.9033 0.0017 20 6 1.1567 -11.9148 0.0005 21 6 1.8659 -10.7537 -0.0006 22 6 1.1861 -9.5210 -0.0001 23 7 1.8571 -8.3670 -0.0015 24 1 -0.4851 0.8401 -0.0004 25 1 2.9443 -3.6054 -0.0020 26 1 3.0055 -5.9474 -0.0028 27 1 -0.7539 -6.2768 -0.0003 28 1 -2.0089 -10.7378 0.0024 29 1 -0.7769 -12.8388 0.0029 30 1 1.6812 -12.8590 0.0052 31 1 2.9457 -10.7777 -0.0020 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252608644.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:50 Heat of formation + Delta-G solvation = 74.241796 kcal Electronic energy + Delta-G solvation = -18326.519438 eV Core-core repulsion = 15188.233216 eV Total energy + Delta-G solvation = -3138.286222 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27154 -37.99005 -37.48425 -35.46467 -34.68755 -32.78313 -31.80113 -30.65694 -29.74450 -26.91521 -25.09237 -24.56953 -22.29034 -21.59652 -20.10298 -18.54622 -18.21771 -17.61717 -16.36202 -15.97729 -15.63911 -15.08956 -14.94952 -14.54576 -14.29251 -13.89136 -13.55926 -13.43498 -12.79285 -12.26249 -11.96799 -11.86988 -11.76886 -11.58622 -11.48797 -11.34223 -10.91245 -10.76668 -10.41578 -9.93264 -9.20408 -9.00934 -8.97562 -8.71448 -7.91180 -7.59615 -6.49636 -5.04471 0.07444 0.46648 1.78667 2.33661 2.98069 3.05266 3.08296 3.11578 3.27607 3.93787 4.07914 4.12398 4.23130 4.31220 4.35125 4.66148 4.72203 4.98544 5.10097 5.21230 5.37659 5.62514 5.73405 5.81795 5.88504 5.93193 6.15175 6.22518 6.32218 6.61200 7.13006 7.32586 7.65803 7.77007 7.88720 8.39349 8.67341 9.10972 10.28776 10.48963 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.062836 B = 0.003045 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.497648 B = 9193.457894 C = 9629.113063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.087 3.913 3 Si 0.919 3.081 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.074 0.926 9 C 0.553 3.447 10 O -0.547 6.547 11 N -0.574 5.574 12 N -0.163 5.163 13 C 0.017 3.983 14 C 0.180 3.820 15 C 0.111 3.889 16 N -0.429 5.429 17 C 0.067 3.933 18 C -0.079 4.079 19 C -0.109 4.109 20 C -0.104 4.104 21 C -0.084 4.084 22 C 0.088 3.912 23 N -0.429 5.429 24 H 0.276 0.724 25 H 0.375 0.625 26 H 0.123 0.877 27 H 0.188 0.812 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 -18.350 0.005 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.137 4.137 3 Si 0.742 3.258 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.092 0.908 9 C 0.362 3.638 10 O -0.426 6.426 11 N -0.321 5.321 12 N 0.022 4.978 13 C -0.192 4.192 14 C 0.026 3.974 15 C -0.066 4.066 16 N -0.141 5.141 17 C -0.057 4.057 18 C -0.098 4.098 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.104 4.104 22 C -0.038 4.038 23 N -0.146 5.146 24 H 0.087 0.913 25 H 0.211 0.789 26 H 0.140 0.860 27 H 0.205 0.795 28 H 0.155 0.845 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.022 -17.840 0.006 17.954 hybrid contribution 1.894 0.596 0.000 1.986 sum 3.916 -17.244 0.006 17.683 Atomic orbital electron populations 1.69996 1.07383 1.28211 1.31396 1.25784 0.94729 1.00780 0.92416 0.86126 0.80424 0.80629 0.78573 1.18454 1.19775 1.19773 1.19904 0.94545 0.89214 1.53210 0.90781 1.17075 0.87928 0.80199 0.78581 1.90709 1.13399 1.84917 1.53570 1.48293 1.07877 1.01179 1.74736 1.74523 1.28532 0.93232 1.01465 1.23245 0.97281 0.88737 1.09944 1.20477 0.91564 0.91371 0.94004 1.24414 0.92066 0.97771 0.92369 1.68737 1.38658 0.97613 1.09130 1.19713 0.91429 0.93621 1.00984 1.20795 1.00594 0.89844 0.98609 1.20974 0.94332 0.98142 0.99463 1.20947 0.94205 0.98249 0.98993 1.20826 1.00598 0.89679 0.99260 1.19545 0.91124 0.93085 1.00074 1.68681 1.38292 0.96965 1.10705 0.91339 0.78930 0.85966 0.79484 0.84472 0.85002 0.84966 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.07 11.72 55.56 0.65 -20.42 16 2 C 0.09 2.27 5.50 -17.34 -0.10 2.18 16 3 Si 0.92 18.75 29.56 -169.99 -5.02 13.72 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.53 -14.11 9.29 -37.67 -0.35 -14.46 16 8 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 9 C 0.55 15.36 7.67 -15.09 -0.12 15.24 16 10 O -0.55 -17.51 15.21 5.05 0.08 -17.43 16 11 N -0.57 -12.93 6.26 29.04 0.18 -12.75 16 12 N -0.16 -3.44 10.15 32.15 0.33 -3.11 16 13 C 0.02 0.29 10.96 -14.61 -0.16 0.13 16 14 C 0.18 3.00 6.75 -82.86 -0.56 2.44 16 15 C 0.11 1.88 10.75 -16.78 -0.18 1.70 16 16 N -0.43 -6.99 10.44 -10.43 -0.11 -7.10 16 17 C 0.07 0.97 6.59 -84.70 -0.56 0.42 16 18 C -0.08 -0.88 9.97 -39.50 -0.39 -1.27 16 19 C -0.11 -0.92 9.95 -39.88 -0.40 -1.31 16 20 C -0.10 -0.86 9.95 -39.93 -0.40 -1.26 16 21 C -0.08 -0.91 9.99 -39.41 -0.39 -1.30 16 22 C 0.09 1.26 6.59 -84.78 -0.56 0.70 16 23 N -0.43 -6.77 10.41 -7.51 -0.08 -6.85 16 24 H 0.28 6.98 8.29 -40.82 -0.34 6.64 16 25 H 0.37 7.02 8.61 -182.60 -1.57 5.44 16 26 H 0.12 1.81 8.03 -52.49 -0.42 1.38 16 27 H 0.19 3.24 7.52 -52.48 -0.39 2.84 16 28 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 30 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 31 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 291.58 15.07 4.39 4.39 Total: -1.00 -33.91 291.58 -7.37 -41.27 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -3.63 Total: 5.08 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -4.16 Total: 3.20 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.97 Total: -50.24 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.08 Total: -17.43 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.91 -7.37 -41.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252608644.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.516 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds