Wall clock time and date at job start Mon Mar 30 2020 02:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30584 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48498 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47104 * 300.00245 * 3 2 1 6 6 H 1.48502 * 109.46807 * 59.99966 * 3 2 1 7 7 C 1.40223 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99892 * 180.02562 * 7 2 1 9 9 C 1.41310 * 120.00352 * 359.97438 * 7 2 1 10 10 O 1.21853 * 119.99432 * 0.02562 * 9 7 2 11 11 N 1.34776 * 120.00447 * 179.97438 * 9 7 2 12 12 N 1.40095 * 120.00318 * 179.97438 * 11 9 7 13 13 C 1.30338 * 119.99890 * 180.02562 * 12 11 9 14 14 C 1.47052 * 119.99447 * 180.02562 * 13 12 11 15 15 C 1.41147 * 119.81853 * 359.97438 * 14 13 12 16 16 N 1.31046 * 120.52381 * 180.02562 * 15 14 13 17 17 C 1.33975 * 119.90856 * 0.02562 * 16 15 14 18 18 C 1.40417 * 120.91184 * 179.97438 * 17 16 15 19 19 C 1.36187 * 119.77698 * 180.02562 * 18 17 16 20 20 C 1.39405 * 120.99232 * 359.97021 * 19 18 17 21 21 C 1.36058 * 120.94303 * 0.02562 * 20 19 18 22 22 C 1.40770 * 119.70710 * 0.02562 * 21 20 19 23 23 N 1.32602 * 119.80609 * 180.02562 * 14 13 12 24 24 H 0.97009 * 120.00354 * 0.02562 * 1 2 3 25 25 H 0.97003 * 119.99680 * 0.02562 * 11 9 7 26 26 H 1.07993 * 120.00232 * 359.97438 * 13 12 11 27 27 H 1.08006 * 119.73789 * 0.04374 * 15 14 13 28 28 H 1.08002 * 120.11365 * 359.97438 * 18 17 16 29 29 H 1.07999 * 119.50440 * 179.97438 * 19 18 17 30 30 H 1.08007 * 119.52865 * 179.74426 * 20 19 18 31 31 H 1.08003 * 120.14382 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 3.6998 1.3464 -0.0006 5 1 1.8810 2.3965 -1.2125 6 1 1.8810 2.3964 1.2125 7 6 2.0069 -1.2144 -0.0005 8 1 3.0870 -1.2144 -0.0001 9 6 1.3004 -2.4382 -0.0005 10 8 0.0819 -2.4381 -0.0005 11 7 1.9743 -3.6054 -0.0016 12 7 1.2739 -4.8187 -0.0010 13 6 1.9256 -5.9474 -0.0015 14 6 1.1903 -7.2209 -0.0015 15 6 -0.2212 -7.2163 -0.0005 16 7 -0.8904 -8.3430 0.0001 17 6 -0.2331 -9.5104 0.0001 18 6 -0.9289 -10.7301 0.0012 19 6 -0.2373 -11.9033 0.0017 20 6 1.1567 -11.9148 0.0005 21 6 1.8659 -10.7537 -0.0006 22 6 1.1861 -9.5210 -0.0001 23 7 1.8571 -8.3670 -0.0015 24 1 -0.4851 0.8401 -0.0004 25 1 2.9443 -3.6054 -0.0020 26 1 3.0055 -5.9474 -0.0028 27 1 -0.7539 -6.2768 -0.0003 28 1 -2.0089 -10.7378 0.0024 29 1 -0.7769 -12.8388 0.0029 30 1 1.6812 -12.8590 0.0052 31 1 2.9457 -10.7777 -0.0020 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252608644.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:50 Heat of formation + Delta-G solvation = 48.150777 kcal Electronic energy + Delta-G solvation = -18327.650829 eV Core-core repulsion = 15188.233216 eV Total energy + Delta-G solvation = -3139.417613 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.37863 -39.73853 -38.63101 -37.09882 -35.90458 -34.75757 -33.34154 -31.56869 -31.13181 -28.74743 -26.40173 -25.70803 -23.25586 -23.05667 -21.83999 -19.92379 -19.38241 -19.10817 -17.75581 -17.50084 -17.31588 -16.27225 -16.03769 -15.83084 -15.42569 -15.24547 -15.14525 -14.72870 -14.61382 -13.63225 -13.30428 -12.89204 -12.85736 -12.85596 -12.78281 -12.73519 -12.65951 -12.45392 -11.98287 -11.38544 -11.02967 -10.30367 -10.24041 -10.03427 -9.66015 -9.18828 -8.44790 -7.10976 -1.02082 -0.62120 0.71325 1.12372 1.40077 1.41741 1.59414 1.76517 1.98285 2.26160 2.41249 2.95545 2.99411 3.09591 3.16347 3.58564 3.59741 3.82711 4.06898 4.15567 4.31715 4.38275 4.48434 4.78296 4.90796 4.96765 5.18092 5.18706 5.20577 5.37905 5.73888 5.76149 5.97207 6.14605 6.55730 6.66864 6.75927 7.31955 8.36579 8.52990 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.062836 B = 0.003045 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.497648 B = 9193.457894 C = 9629.113063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.030 3.970 3 Si 1.010 2.990 4 H -0.242 1.242 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.556 4.556 8 H 0.099 0.901 9 C 0.542 3.458 10 O -0.609 6.609 11 N -0.581 5.581 12 N -0.224 5.224 13 C 0.069 3.931 14 C 0.148 3.852 15 C 0.094 3.906 16 N -0.444 5.444 17 C 0.053 3.947 18 C -0.103 4.103 19 C -0.078 4.078 20 C -0.081 4.081 21 C -0.095 4.095 22 C 0.064 3.936 23 N -0.420 5.420 24 H 0.282 0.718 25 H 0.391 0.609 26 H 0.151 0.849 27 H 0.169 0.831 28 H 0.148 0.852 29 H 0.178 0.822 30 H 0.180 0.820 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 -21.791 0.007 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.189 4.189 3 Si 0.828 3.172 4 H -0.165 1.165 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.592 4.592 8 H 0.117 0.883 9 C 0.352 3.648 10 O -0.493 6.493 11 N -0.328 5.328 12 N -0.034 5.034 13 C -0.142 4.142 14 C -0.005 4.005 15 C -0.082 4.082 16 N -0.158 5.158 17 C -0.072 4.072 18 C -0.122 4.122 19 C -0.098 4.098 20 C -0.101 4.101 21 C -0.114 4.114 22 C -0.063 4.063 23 N -0.138 5.138 24 H 0.093 0.907 25 H 0.229 0.771 26 H 0.168 0.832 27 H 0.186 0.814 28 H 0.166 0.834 29 H 0.195 0.805 30 H 0.197 0.803 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.241 -21.292 0.008 21.711 hybrid contribution 1.216 0.970 0.000 1.555 sum 5.456 -20.322 0.007 21.042 Atomic orbital electron populations 1.70160 1.09948 1.29873 1.32787 1.27147 0.95555 1.05349 0.90855 0.84793 0.79381 0.74286 0.78758 1.16481 1.19095 1.19088 1.20463 0.95877 0.89541 1.53320 0.88293 1.17430 0.87445 0.81980 0.77935 1.90647 1.15776 1.86424 1.56432 1.47468 1.08240 1.00980 1.76094 1.74593 1.29265 0.93501 1.06081 1.23658 0.98562 0.88058 1.03930 1.20287 0.91372 0.91515 0.97341 1.24115 0.92370 0.97591 0.94166 1.68684 1.39335 0.98209 1.09537 1.20273 0.92133 0.94065 1.00755 1.21088 1.01512 0.89463 1.00143 1.21579 0.94703 0.98696 0.94775 1.21550 0.94240 0.99135 0.95141 1.21166 1.01793 0.88888 0.99560 1.20099 0.91485 0.93802 1.00898 1.68632 1.38537 0.97183 1.09408 0.90731 0.77062 0.83222 0.81405 0.83412 0.80503 0.80266 0.82626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.62 11.72 21.87 0.26 -47.36 16 2 C 0.03 1.59 5.50 85.36 0.47 2.06 16 3 Si 1.01 38.68 29.56 68.60 2.03 40.71 16 4 H -0.24 -8.44 7.11 99.48 0.71 -7.73 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 6 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 7 C -0.56 -30.42 9.29 23.51 0.22 -30.20 16 8 H 0.10 4.70 7.85 -2.91 -0.02 4.67 16 9 C 0.54 31.89 7.67 85.00 0.65 32.54 16 10 O -0.61 -41.83 15.21 -4.84 -0.07 -41.90 16 11 N -0.58 -27.59 6.26 -180.19 -1.13 -28.72 16 12 N -0.22 -10.04 10.15 -52.21 -0.53 -10.57 16 13 C 0.07 2.44 10.96 87.23 0.96 3.40 16 14 C 0.15 5.11 6.75 42.05 0.28 5.39 16 15 C 0.09 3.40 10.75 85.52 0.92 4.32 16 16 N -0.44 -15.09 10.44 -186.93 -1.95 -17.05 16 17 C 0.05 1.50 6.59 40.26 0.27 1.77 16 18 C -0.10 -2.00 9.97 22.32 0.22 -1.77 16 19 C -0.08 -0.87 9.95 22.07 0.22 -0.65 16 20 C -0.08 -0.86 9.95 22.04 0.22 -0.64 16 21 C -0.09 -1.68 9.99 22.38 0.22 -1.45 16 22 C 0.06 1.75 6.59 40.42 0.27 2.01 16 23 N -0.42 -13.06 10.41 -177.66 -1.85 -14.91 16 24 H 0.28 14.98 8.29 -92.70 -0.77 14.22 16 25 H 0.39 15.14 8.61 -213.32 -1.84 13.30 16 26 H 0.15 4.34 8.03 -2.91 -0.02 4.31 16 27 H 0.17 6.59 7.52 -2.91 -0.02 6.57 16 28 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 30 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 31 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -81.43 291.58 1.02 -80.41 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -0.65 Total: 22.60 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 4.92 Total: 16.78 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -5.20 Total: -118.60 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -0.07 Total: -41.90 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -81.43 1.02 -80.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252608644.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.562 kcal (2) G-P(sol) polarization free energy of solvation -81.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds