Wall clock time and date at job start Mon Mar 30 2020 01:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47008 * 2 1 4 4 C 1.39706 * 120.00483 * 84.99827 * 3 2 1 5 5 C 1.39310 * 120.48916 * 60.99851 * 4 3 2 6 6 C 1.38502 * 118.35594 * 179.97438 * 5 4 3 7 7 C 1.38270 * 119.24205 * 0.25766 * 6 5 4 8 8 N 1.31853 * 120.92543 * 359.49269 * 7 6 5 9 9 C 1.31817 * 121.80404 * 0.49587 * 8 7 6 10 10 S 1.65603 * 119.99865 * 264.99877 * 3 2 1 11 11 O 1.42101 * 104.27710 * 31.64075 * 10 3 2 12 12 O 1.42102 * 104.27707 * 159.50004 * 10 3 2 13 13 C 1.81405 * 104.45090 * 275.57083 * 10 3 2 14 14 C 1.50697 * 109.47060 * 179.97438 * 13 10 3 15 15 H 1.07998 * 120.00205 * 359.97438 * 14 13 10 16 16 C 1.37879 * 119.99728 * 179.97438 * 14 13 10 17 17 N 1.31518 * 120.00003 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00016 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47401 * 89.99752 * 18 16 14 20 20 H 1.48505 * 109.47050 * 210.00091 * 18 16 14 21 21 H 1.48505 * 109.47296 * 329.99755 * 18 16 14 22 22 H 1.08999 * 109.47053 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47425 * 300.00061 * 1 2 3 24 24 H 1.08997 * 109.46877 * 60.00533 * 1 2 3 25 25 H 1.08998 * 109.47425 * 239.99939 * 2 1 3 26 26 H 1.08999 * 109.47381 * 119.99510 * 2 1 3 27 27 H 1.08006 * 120.82478 * 359.96286 * 5 4 3 28 28 H 1.08005 * 120.37587 * 179.97438 * 6 5 4 29 29 H 1.07997 * 119.53142 * 179.72599 * 7 6 5 30 30 H 1.08000 * 119.67781 * 179.74732 * 9 8 7 31 31 H 1.08999 * 109.46862 * 300.00410 * 13 10 3 32 32 H 1.09003 * 109.47019 * 59.99840 * 13 10 3 33 33 H 0.96991 * 119.99794 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1517 2.0751 1.2052 5 6 3.0134 1.6107 2.1965 6 6 3.1119 2.3334 3.3739 7 6 2.3541 3.4797 3.5283 8 7 1.5510 3.8954 2.5687 9 6 1.4276 3.2382 1.4327 10 16 2.4121 2.1202 -1.4287 11 8 1.5267 1.5421 -2.3780 12 8 2.3619 3.5087 -1.1306 13 6 4.1197 1.6000 -1.7518 14 6 4.5966 2.2151 -3.0422 15 1 3.9382 2.8547 -3.6113 16 6 5.8735 1.9614 -3.4963 17 7 6.2896 2.4978 -4.6227 18 14 7.0120 0.8545 -2.5123 19 1 6.8415 -0.5520 -2.9573 20 1 8.4198 1.2750 -2.7285 21 1 6.6799 0.9607 -1.0688 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 3.5903 0.7094 2.0506 28 1 3.7696 2.0029 4.1642 29 1 2.4239 4.0443 4.4462 30 1 0.7564 3.6076 0.6715 31 1 4.7605 1.9284 -0.9335 32 1 4.1597 0.5135 -1.8310 33 1 7.1880 2.3196 -4.9419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253431906.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:42 Heat of formation + Delta-G solvation = -33.355550 kcal Electronic energy + Delta-G solvation = -19064.417071 eV Core-core repulsion = 16024.616279 eV Total energy + Delta-G solvation = -3039.800792 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.20718 -36.76941 -36.39803 -35.22223 -33.32699 -32.22667 -31.39367 -29.89208 -28.71208 -24.01874 -23.41459 -23.10726 -22.01766 -18.96559 -17.78078 -17.21628 -16.79106 -16.40241 -16.32006 -15.44813 -14.78092 -14.30145 -14.20036 -13.73687 -13.62478 -13.17422 -13.06871 -12.78972 -12.61734 -12.60991 -11.86479 -11.71573 -11.58127 -11.36656 -11.30879 -10.95178 -10.91189 -10.41288 -10.22882 -9.98227 -9.74933 -9.52557 -9.26854 -8.90358 -8.43264 -6.38223 -4.48128 0.78011 1.21313 1.30153 3.07609 3.11324 3.15300 3.18181 3.82538 4.15066 4.48046 4.52463 4.68551 4.81044 4.86777 4.92112 4.98955 5.10582 5.24913 5.31992 5.35964 5.52495 5.72878 5.84046 6.01355 6.05176 6.11968 6.17250 6.28365 6.33319 6.47333 6.99077 7.10323 7.93333 8.01725 8.52688 9.16264 10.72775 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020297 B = 0.007208 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.168307 B = 3883.800508 C = 4321.658921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.120 3.880 3 N -0.959 5.959 4 C 0.106 3.894 5 C -0.084 4.084 6 C -0.166 4.166 7 C 0.088 3.912 8 N -0.474 5.474 9 C 0.120 3.880 10 S 2.591 3.409 11 O -0.958 6.958 12 O -0.958 6.958 13 C -0.466 4.466 14 C -0.535 4.535 15 H 0.086 0.914 16 C 0.090 3.910 17 N -0.878 5.878 18 Si 0.883 3.117 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.264 1.264 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.156 0.844 30 H 0.160 0.840 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.155 -6.114 15.579 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.004 4.004 3 N -0.787 5.787 4 C 0.009 3.991 5 C -0.113 4.113 6 C -0.186 4.186 7 C -0.070 4.070 8 N -0.182 5.182 9 C -0.040 4.040 10 S 2.692 3.308 11 O -0.948 6.948 12 O -0.948 6.948 13 C -0.600 4.600 14 C -0.574 4.574 15 H 0.104 0.896 16 C -0.117 4.117 17 N -0.513 5.513 18 Si 0.709 3.291 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.188 1.188 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.156 0.844 28 H 0.154 0.846 29 H 0.173 0.827 30 H 0.177 0.823 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.119 -4.814 15.021 17.305 hybrid contribution 1.861 -1.739 0.421 2.582 sum -5.258 -6.553 15.442 17.580 Atomic orbital electron populations 1.22203 0.95548 1.02295 1.03036 1.21335 0.95135 0.80654 1.03247 1.55970 1.78985 1.23561 1.20161 1.18404 0.97429 0.95245 0.88042 1.21762 0.95767 1.00424 0.93384 1.22032 1.01448 0.96888 0.98242 1.22780 0.92580 0.94001 0.97597 1.67716 1.18639 1.30940 1.00952 1.23122 0.95580 0.91379 0.93959 1.05903 0.78913 0.74321 0.71711 1.93512 1.63165 1.78861 1.59295 1.93528 1.87934 1.30740 1.82628 1.28200 1.17708 1.06923 1.07218 1.20055 1.01367 1.32749 1.03258 0.89573 1.24887 0.97346 0.94949 0.94543 1.69861 1.18870 1.42466 1.20092 0.86721 0.80269 0.81155 0.80996 1.19522 1.20487 1.18807 0.91539 0.92623 0.91057 0.89404 0.90643 0.84443 0.84623 0.82719 0.82264 0.89749 0.90214 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.22 37.16 0.38 -1.66 16 2 C 0.12 1.50 5.90 -4.04 -0.02 1.48 16 3 N -0.96 -15.05 2.79 -58.52 -0.16 -15.22 16 4 C 0.11 1.60 5.23 -83.63 -0.44 1.16 16 5 C -0.08 -1.05 9.59 -39.09 -0.37 -1.42 16 6 C -0.17 -1.78 10.10 -39.47 -0.40 -2.18 16 7 C 0.09 1.05 11.18 -17.53 -0.20 0.86 16 8 N -0.47 -7.26 10.35 -13.08 -0.14 -7.39 16 9 C 0.12 1.94 9.74 -17.32 -0.17 1.78 16 10 S 2.59 53.03 5.22 -107.50 -0.56 52.47 16 11 O -0.96 -21.29 16.77 -57.54 -0.97 -22.26 16 12 O -0.96 -21.95 15.49 -57.54 -0.89 -22.84 16 13 C -0.47 -10.34 5.00 36.00 0.18 -10.16 16 14 C -0.54 -14.86 9.68 -34.44 -0.33 -15.20 16 15 H 0.09 2.59 7.96 -52.49 -0.42 2.17 16 16 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 17 N -0.88 -25.88 13.96 55.43 0.77 -25.10 16 18 Si 0.88 20.16 27.47 -169.99 -4.67 15.49 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.99 7.70 -51.93 -0.40 0.59 16 25 H 0.09 1.07 7.77 -51.93 -0.40 0.67 16 26 H 0.08 0.73 7.69 -51.93 -0.40 0.33 16 27 H 0.14 1.40 8.04 -52.48 -0.42 0.98 16 28 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 29 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 30 H 0.16 2.66 7.43 -52.49 -0.39 2.27 16 31 H 0.08 1.78 7.20 -51.92 -0.37 1.40 16 32 H 0.08 1.58 7.57 -51.92 -0.39 1.19 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 296.97 15.07 4.48 4.48 Total: -1.00 -33.78 296.97 -7.66 -41.45 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.06 Total: 1.86 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -1.47 Total: -22.94 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.48 Total: -47.71 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -1.86 Total: -45.10 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Atomic # 16 Polarization: 53.03 SS G_CDS: -0.56 Total: 52.47 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.78 -7.66 -41.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253431906.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.093 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds