Wall clock time and date at job start Mon Mar 30 2020 01:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47008 * 2 1 4 4 C 1.39706 * 120.00483 * 84.99827 * 3 2 1 5 5 C 1.39310 * 120.48916 * 60.99851 * 4 3 2 6 6 C 1.38502 * 118.35594 * 179.97438 * 5 4 3 7 7 C 1.38270 * 119.24205 * 0.25766 * 6 5 4 8 8 N 1.31853 * 120.92543 * 359.49269 * 7 6 5 9 9 C 1.31817 * 121.80404 * 0.49587 * 8 7 6 10 10 S 1.65603 * 119.99865 * 264.99877 * 3 2 1 11 11 O 1.42101 * 104.27710 * 31.64075 * 10 3 2 12 12 O 1.42102 * 104.27707 * 159.50004 * 10 3 2 13 13 C 1.81405 * 104.45090 * 275.57083 * 10 3 2 14 14 C 1.50697 * 109.47060 * 179.97438 * 13 10 3 15 15 H 1.07998 * 120.00205 * 359.97438 * 14 13 10 16 16 C 1.37879 * 119.99728 * 179.97438 * 14 13 10 17 17 N 1.31518 * 120.00003 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00016 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47401 * 89.99752 * 18 16 14 20 20 H 1.48505 * 109.47050 * 210.00091 * 18 16 14 21 21 H 1.48505 * 109.47296 * 329.99755 * 18 16 14 22 22 H 1.08999 * 109.47053 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47425 * 300.00061 * 1 2 3 24 24 H 1.08997 * 109.46877 * 60.00533 * 1 2 3 25 25 H 1.08998 * 109.47425 * 239.99939 * 2 1 3 26 26 H 1.08999 * 109.47381 * 119.99510 * 2 1 3 27 27 H 1.08006 * 120.82478 * 359.96286 * 5 4 3 28 28 H 1.08005 * 120.37587 * 179.97438 * 6 5 4 29 29 H 1.07997 * 119.53142 * 179.72599 * 7 6 5 30 30 H 1.08000 * 119.67781 * 179.74732 * 9 8 7 31 31 H 1.08999 * 109.46862 * 300.00410 * 13 10 3 32 32 H 1.09003 * 109.47019 * 59.99840 * 13 10 3 33 33 H 0.96991 * 119.99794 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1517 2.0751 1.2052 5 6 3.0134 1.6107 2.1965 6 6 3.1119 2.3334 3.3739 7 6 2.3541 3.4797 3.5283 8 7 1.5510 3.8954 2.5687 9 6 1.4276 3.2382 1.4327 10 16 2.4121 2.1202 -1.4287 11 8 1.5267 1.5421 -2.3780 12 8 2.3619 3.5087 -1.1306 13 6 4.1197 1.6000 -1.7518 14 6 4.5966 2.2151 -3.0422 15 1 3.9382 2.8547 -3.6113 16 6 5.8735 1.9614 -3.4963 17 7 6.2896 2.4978 -4.6227 18 14 7.0120 0.8545 -2.5123 19 1 6.8415 -0.5520 -2.9573 20 1 8.4198 1.2750 -2.7285 21 1 6.6799 0.9607 -1.0688 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 3.5903 0.7094 2.0506 28 1 3.7696 2.0029 4.1642 29 1 2.4239 4.0443 4.4462 30 1 0.7564 3.6076 0.6715 31 1 4.7605 1.9284 -0.9335 32 1 4.1597 0.5135 -1.8310 33 1 7.1880 2.3196 -4.9419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253431906.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:41 Heat of formation + Delta-G solvation = -59.017839 kcal Electronic energy + Delta-G solvation = -19065.529871 eV Core-core repulsion = 16024.616279 eV Total energy + Delta-G solvation = -3040.913593 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.22798 -38.21200 -37.77791 -36.92734 -35.36843 -33.19660 -32.38071 -31.83445 -29.78906 -25.24478 -24.91100 -24.37208 -23.12558 -20.29134 -19.60198 -18.61364 -18.09686 -17.72619 -17.51974 -16.99385 -16.28478 -16.11482 -15.13122 -14.85865 -14.73859 -14.62596 -14.33166 -14.20572 -14.07476 -13.71592 -13.59218 -13.14227 -13.07175 -12.77729 -12.75692 -12.63947 -12.28329 -11.94371 -11.88299 -11.44115 -11.22328 -10.95683 -10.66253 -10.28122 -9.55864 -8.47303 -6.65541 -0.76444 0.16520 0.32697 1.31819 1.35844 1.47001 1.72494 2.26063 2.81251 2.83605 2.87704 3.25581 3.51688 3.76489 3.94820 4.04893 4.17258 4.24450 4.34392 4.37459 4.46138 4.50378 4.63538 4.78553 4.91563 5.09383 5.15549 5.16098 5.28189 5.34547 5.47102 5.77948 5.93700 6.38960 7.01528 7.03439 8.68098 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020297 B = 0.007208 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.168307 B = 3883.800508 C = 4321.658921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 N -0.946 5.946 4 C 0.084 3.916 5 C -0.080 4.080 6 C -0.149 4.149 7 C 0.084 3.916 8 N -0.503 5.503 9 C 0.090 3.910 10 S 2.608 3.392 11 O -0.986 6.986 12 O -0.993 6.993 13 C -0.473 4.473 14 C -0.560 4.560 15 H 0.036 0.964 16 C 0.023 3.977 17 N -0.933 5.933 18 Si 0.954 3.046 19 H -0.252 1.252 20 H -0.278 1.278 21 H -0.229 1.229 22 H 0.095 0.905 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.091 0.909 26 H 0.117 0.883 27 H 0.170 0.830 28 H 0.182 0.818 29 H 0.189 0.811 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.587 -8.862 19.534 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.015 4.015 3 N -0.777 5.777 4 C -0.012 4.012 5 C -0.109 4.109 6 C -0.169 4.169 7 C -0.073 4.073 8 N -0.213 5.213 9 C -0.069 4.069 10 S 2.709 3.291 11 O -0.976 6.976 12 O -0.983 6.983 13 C -0.607 4.607 14 C -0.598 4.598 15 H 0.054 0.946 16 C -0.178 4.178 17 N -0.570 5.570 18 Si 0.773 3.227 19 H -0.176 1.176 20 H -0.203 1.203 21 H -0.152 1.152 22 H 0.113 0.887 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.109 0.891 26 H 0.135 0.865 27 H 0.187 0.813 28 H 0.199 0.801 29 H 0.206 0.794 30 H 0.151 0.849 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.577 -7.558 18.956 21.156 hybrid contribution 1.283 -0.811 -0.718 1.679 sum -4.294 -8.369 18.238 20.521 Atomic orbital electron populations 1.22205 0.95496 1.03706 1.01637 1.21753 0.95373 0.78952 1.05394 1.55403 1.78687 1.24698 1.18893 1.18530 0.98981 0.95389 0.88332 1.22158 0.94663 1.01369 0.92726 1.22525 1.00516 0.95371 0.98491 1.23483 0.91384 0.94763 0.97709 1.67670 1.20322 1.31884 1.01415 1.22916 0.96825 0.92761 0.94439 1.05032 0.78103 0.73575 0.72376 1.93468 1.63551 1.79163 1.61407 1.93477 1.88083 1.33261 1.83459 1.28211 1.19306 1.08435 1.04768 1.20322 1.01341 1.32678 1.05477 0.94611 1.26093 0.99305 0.96692 0.95728 1.70024 1.19782 1.44665 1.22496 0.85617 0.77110 0.79059 0.80905 1.17620 1.20327 1.15158 0.88666 0.92441 0.94080 0.89098 0.86478 0.81280 0.80083 0.79366 0.84890 0.87743 0.87014 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 10.22 71.98 0.74 -3.09 16 2 C 0.11 2.40 5.90 86.38 0.51 2.91 16 3 N -0.95 -28.38 2.79 -339.07 -0.95 -29.33 16 4 C 0.08 2.39 5.23 38.30 0.20 2.59 16 5 C -0.08 -1.62 9.59 22.59 0.22 -1.40 16 6 C -0.15 -2.42 10.10 22.34 0.23 -2.20 16 7 C 0.08 1.73 11.18 84.70 0.95 2.68 16 8 N -0.50 -15.02 10.35 -195.30 -2.02 -17.04 16 9 C 0.09 2.94 9.74 84.85 0.83 3.77 16 10 S 2.61 108.76 5.22 -56.49 -0.29 108.47 16 11 O -0.99 -45.47 16.77 -127.65 -2.14 -47.61 16 12 O -0.99 -47.71 15.49 -127.65 -1.98 -49.69 16 13 C -0.47 -20.51 5.00 71.23 0.36 -20.15 16 14 C -0.56 -31.98 9.68 25.60 0.25 -31.73 16 15 H 0.04 2.31 7.96 -2.91 -0.02 2.29 16 16 C 0.02 1.32 5.47 84.65 0.46 1.78 16 17 N -0.93 -56.92 13.96 21.45 0.30 -56.62 16 18 Si 0.95 39.84 27.47 68.60 1.88 41.73 16 19 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 20 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 21 H -0.23 -8.24 6.54 99.48 0.65 -7.59 16 22 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.04 1.15 7.70 -2.39 -0.02 1.13 16 25 H 0.09 1.98 7.77 -2.39 -0.02 1.96 16 26 H 0.12 1.67 7.69 -2.39 -0.02 1.65 16 27 H 0.17 2.31 8.04 -2.91 -0.02 2.29 16 28 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 29 H 0.19 2.42 8.06 -2.91 -0.02 2.39 16 30 H 0.13 4.84 7.43 -2.91 -0.02 4.82 16 31 H 0.10 4.10 7.20 -2.39 -0.02 4.09 16 32 H 0.11 4.11 7.57 -2.39 -0.02 4.09 16 33 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -79.49 296.97 0.58 -78.91 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.05 Total: 16.03 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 4.73 Total: -44.84 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -2.67 Total: -102.99 kcal Atomic # 8 Polarization: -93.18 SS G_CDS: -4.12 Total: -97.30 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 1.88 Total: 41.73 kcal Atomic # 16 Polarization: 108.76 SS G_CDS: -0.29 Total: 108.47 kcal Total: -79.49 0.58 -78.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253431906.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.888 kcal (2) G-P(sol) polarization free energy of solvation -79.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds