Wall clock time and date at job start Mon Mar 30 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.46856 * 2 1 4 4 C 1.36895 * 120.00035 * 263.90538 * 3 2 1 5 5 H 1.08003 * 120.00141 * 140.37382 * 4 3 2 6 6 C 1.39005 * 119.99843 * 320.38298 * 4 3 2 7 7 N 1.31397 * 119.99824 * 163.22162 * 6 4 3 8 8 Si 1.86801 * 120.00048 * 343.22130 * 6 4 3 9 9 H 1.48500 * 109.46996 * 89.48668 * 8 6 4 10 10 H 1.48497 * 109.47111 * 209.48646 * 8 6 4 11 11 H 1.48494 * 109.47278 * 329.48573 * 8 6 4 12 12 C 1.34781 * 120.00554 * 83.90885 * 3 2 1 13 13 O 1.21721 * 120.00295 * 181.98360 * 12 3 2 14 14 C 1.46555 * 119.99513 * 1.98821 * 12 3 2 15 15 C 1.36785 * 126.17835 * 172.11356 * 14 12 3 16 16 N 1.30942 * 113.92139 * 179.97438 * 15 14 12 17 17 C 1.29380 * 117.46782 * 0.02562 * 16 15 14 18 18 C 1.50704 * 124.70261 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.46788 * 90.02413 * 18 17 16 20 20 C 1.42902 * 114.00096 * 180.02562 * 19 18 17 21 21 S 1.70921 * 110.59460 * 359.97438 * 17 16 15 22 22 H 1.08998 * 109.47048 * 60.00515 * 1 2 3 23 23 H 1.09001 * 109.47198 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47568 * 300.00358 * 1 2 3 25 25 H 1.08996 * 109.47131 * 239.99422 * 2 1 3 26 26 H 1.09007 * 109.46559 * 119.99196 * 2 1 3 27 27 H 0.97002 * 119.99724 * 180.02562 * 7 6 4 28 28 H 1.07999 * 123.04009 * 0.26805 * 15 14 12 29 29 H 1.08995 * 109.47094 * 210.02088 * 18 17 16 30 30 H 1.08999 * 109.46726 * 330.02871 * 18 17 16 31 31 H 1.09007 * 109.46554 * 59.99586 * 20 19 18 32 32 H 1.08991 * 109.47663 * 180.02562 * 20 19 18 33 33 H 1.09004 * 109.46888 * 300.00519 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3651 1.9846 -1.1788 5 1 2.1145 3.0213 -1.3490 6 6 3.0396 1.2629 -2.1569 7 7 3.0846 1.7120 -3.3909 8 14 3.8818 -0.3453 -1.7169 9 1 2.9243 -1.4678 -1.8853 10 1 5.0499 -0.5529 -2.6100 11 1 4.3409 -0.2937 -0.3056 12 6 2.1262 2.0579 1.1606 13 8 2.4974 3.2171 1.1570 14 6 1.7965 1.3980 2.4269 15 6 2.0017 1.9068 3.6800 16 7 1.6160 1.1111 4.6458 17 6 1.1023 -0.0282 4.3111 18 6 0.6066 -1.0653 5.2858 19 8 -0.7752 -0.8331 5.5664 20 6 -1.3464 -1.7662 6.4858 21 16 1.0639 -0.1941 2.6104 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.5550 1.2082 -4.0735 28 1 2.4377 2.8789 3.8566 29 1 0.7275 -2.0581 4.8526 30 1 1.1810 -0.9994 6.2098 31 1 -0.8123 -1.7144 7.4346 32 1 -2.3965 -1.5222 6.6458 33 1 -1.2658 -2.7738 6.0780 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284997209.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:35 Heat of formation + Delta-G solvation = -9.145513 kcal Electronic energy + Delta-G solvation = -18655.353973 eV Core-core repulsion = 15616.603007 eV Total energy + Delta-G solvation = -3038.750966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.58793 -38.77377 -37.76360 -35.39297 -32.61972 -31.16805 -30.04182 -28.42579 -26.40111 -25.19036 -23.58563 -23.21715 -21.04225 -18.65004 -18.10162 -17.16095 -16.71296 -16.26174 -16.09761 -15.45215 -15.36189 -14.70445 -14.43337 -13.85657 -13.59609 -13.36182 -12.83867 -12.69123 -12.57888 -12.41680 -12.23334 -11.71536 -11.63120 -11.33317 -11.16553 -10.93849 -10.43825 -10.06857 -9.99131 -9.31351 -9.26642 -8.89532 -8.80148 -8.55798 -7.94075 -6.57670 -4.15339 0.54759 1.53244 1.96262 2.77240 2.89789 3.10212 3.12568 3.67873 3.94865 3.97449 4.16451 4.40694 4.78877 4.82995 5.07623 5.11796 5.17941 5.25014 5.37746 5.42312 5.44701 5.61798 5.69365 5.73631 6.06567 6.19081 6.46107 6.58652 6.85083 7.34102 7.93759 8.08489 8.29769 8.73097 9.07004 9.52170 10.52864 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030680 B = 0.005886 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.423308 B = 4755.527280 C = 5142.627181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.068 3.932 3 N -0.448 5.448 4 C -0.307 4.307 5 H 0.113 0.887 6 C 0.062 3.938 7 N -0.853 5.853 8 Si 0.875 3.125 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.262 1.262 12 C 0.528 3.472 13 O -0.548 6.548 14 C -0.248 4.248 15 C 0.080 3.920 16 N -0.459 5.459 17 C -0.026 4.026 18 C 0.145 3.855 19 O -0.382 6.382 20 C 0.032 3.968 21 S 0.212 5.788 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.278 0.722 28 H 0.185 0.815 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 -11.891 12.917 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.057 4.057 3 N -0.168 5.168 4 C -0.434 4.434 5 H 0.130 0.870 6 C -0.146 4.146 7 N -0.488 5.488 8 Si 0.703 3.297 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.186 1.186 12 C 0.316 3.684 13 O -0.431 6.431 14 C -0.373 4.373 15 C -0.077 4.077 16 N -0.175 5.175 17 C -0.299 4.299 18 C 0.066 3.934 19 O -0.301 6.301 20 C -0.065 4.065 21 S 0.470 5.530 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.202 0.798 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.252 -11.889 12.544 18.379 hybrid contribution 1.010 -0.319 0.416 1.139 sum -5.241 -12.208 12.961 18.560 Atomic orbital electron populations 1.22272 0.95103 1.02154 1.03247 1.22223 0.95803 0.86288 1.01433 1.43681 1.55899 1.11090 1.06130 1.19134 1.35755 0.99588 0.88961 0.86964 1.25424 0.95748 0.98576 0.94830 1.69676 1.39006 1.39542 1.00570 0.87022 0.79872 0.82912 0.79941 1.19524 1.20788 1.18581 1.16785 0.83100 0.87435 0.81113 1.90718 1.50689 1.16119 1.85556 1.26715 1.10987 0.98850 1.00773 1.22254 0.99995 1.00349 0.85122 1.66049 1.11922 1.02539 1.36966 1.27221 1.04642 0.97687 1.00386 1.20703 0.83083 0.93470 0.96167 1.87986 1.23338 1.54113 1.64639 1.22777 0.99164 0.92421 0.92133 1.84502 1.53841 1.15302 0.99402 0.90599 0.91570 0.92185 0.89022 0.91917 0.91100 0.79821 0.91288 0.90742 0.93821 0.89332 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.02 37.16 0.34 -2.46 16 2 C 0.07 1.33 4.18 -4.04 -0.02 1.32 16 3 N -0.45 -10.81 2.18 -116.34 -0.25 -11.07 16 4 C -0.31 -8.44 9.37 -15.01 -0.14 -8.58 16 5 H 0.11 3.46 7.93 -52.48 -0.42 3.04 16 6 C 0.06 1.65 5.35 -17.45 -0.09 1.55 16 7 N -0.85 -23.65 13.96 55.50 0.77 -22.87 16 8 Si 0.88 19.63 24.98 -169.99 -4.25 15.38 16 9 H -0.27 -5.43 6.48 56.52 0.37 -5.07 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 12 C 0.53 12.81 7.55 -12.91 -0.10 12.72 16 13 O -0.55 -15.15 16.77 5.17 0.09 -15.06 16 14 C -0.25 -4.98 6.19 -36.76 -0.23 -5.21 16 15 C 0.08 1.51 11.18 -18.46 -0.21 1.30 16 16 N -0.46 -8.14 10.50 -11.25 -0.12 -8.26 16 17 C -0.03 -0.41 7.00 -13.31 -0.09 -0.50 16 18 C 0.15 1.72 6.51 36.01 0.23 1.96 16 19 O -0.38 -4.83 10.69 -35.23 -0.38 -5.20 16 20 C 0.03 0.25 11.01 101.05 1.11 1.37 16 21 S 0.21 3.35 15.69 -107.50 -1.69 1.67 16 22 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.98 6.19 -49.63 -0.31 0.68 16 25 H 0.09 1.86 3.29 -51.93 -0.17 1.69 16 26 H 0.06 1.13 4.37 -22.14 -0.10 1.04 16 27 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.18 3.29 8.06 -52.49 -0.42 2.86 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 287.94 15.07 4.34 4.34 Total: -1.00 -31.95 287.94 -4.22 -36.17 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.54 Total: 1.44 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 0.81 Total: 3.47 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.40 Total: -42.20 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.29 Total: -20.26 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.25 Total: 15.38 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.69 Total: 1.67 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.95 -4.22 -36.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284997209.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.023 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds